Oskar Maier

16 papers Journal 4Unranked 10
YearRankTypeTitle / Venue / Authors
2019 J jnl
CoRR
Tobias Kuhn, Steven Bourke, Levin Brinkmann, Tobias Buchwald, Conor Digan, Hendrik Hache, Sebastian Jaeger, Patrick Lehmann, Oskar Maier, Stefan Matting, Yura Okulovsky
2018 conf
MICCAI (4)
Annika Reinke, Matthias Eisenmann, Sinan Onogur, Marko Stankovic, Patrick Scholz, Peter M. Full, Hrvoje Bogunovic, Bennett A. Landman, Oskar Maier, Bjoern H. Menze, Gregory C. Sharp, Korsuk Sirinukunwattana, Stefanie Speidel, Fons van der Sommen, Guoyan Zheng, Henning Müller, Michal Kozubek, Tal Arbel, Andrew P. Bradley, Pierre Jannin, Annette Kopp-Schneider, Lena Maier-Hein
2018 J jnl
CoRR
Lena Maier-Hein, Matthias Eisenmann, Annika Reinke, Sinan Onogur, Marko Stankovic, Patrick Scholz, Tal Arbel, Hrvoje Bogunovic, Andrew P. Bradley, Aaron Carass, Carolin Feldmann, Alejandro F. Frangi, Peter M. Full, Bram van Ginneken, Allan Hanbury, Katrin Honauer, Michal Kozubek, Bennett A. Landman, Keno März, Oskar Maier, Klaus H. Maier-Hein, Bjoern H. Menze, Henning Müller, Peter F. Neher, Wiro J. Niessen, Nasir M. Rajpoot, Gregory C. Sharp, Korsuk Sirinukunwattana, Stefanie Speidel, Christian Stock, Danail Stoyanov, Abdel Aziz Taha, Fons van der Sommen, Ching-Wei Wang, Marc-André Weber, Guoyan Zheng, Pierre Jannin, Annette Kopp-Schneider
2017 J jnl
Medical Image Anal.
Oskar Maier, Bjoern H. Menze, Janina von der Gablentz, Levin Häni, Mattias P. Heinrich, Matthias Liebrand, Stefan Winzeck, Abdul Basit, Paul Bentley, Liang Chen, Daan Christiaens, Francis Dutil, Karl Egger, Chaolu Feng, Ben Glocker, Michael Götz, Tom Haeck, Hanna-Leena Halme, Mohammad Havaei, Khan M. Iftekharuddin, Pierre-Marc Jodoin, et al.
2017 conf
Bildverarbeitung für die Medizin
Christian Lucas, Oskar Maier, Mattias P. Heinrich
2016 ed.
Brainles@MICCAI
Alessandro Crimi, Bjoern H. Menze, Oskar Maier, Mauricio Reyes, Heinz Handels
2016 ed.
BrainLes@MICCAI
Alessandro Crimi, Bjoern H. Menze, Oskar Maier, Mauricio Reyes, Stefan Winzeck, Heinz Handels
2016 conf
BrainLes@MICCAI
Oskar Maier, Heinz Handels
2015 conf
Bildverarbeitung für die Medizin
Albrecht Kleinfeld, Oskar Maier, Nils Daniel Forkert, Heinz Handels
2015 conf
Brainles@MICCAI
Oskar Maier, Matthias Wilms, Heinz Handels
2015 conf
ISBI
Oskar Maier, Heinz Handels
2015 conf
VISCERAL Challenge@ISBI
Mattias P. Heinrich, Oskar Maier, Heinz Handels
2014 conf
Computer-Aided Diagnosis
Oskar Maier, Matthias Wilms, Janina von der Gablentz, Ulrike Krämer, Heinz Handels
2014 conf
Bildverarbeitung für die Medizin
Oskar Maier, Matthias Wilms, Janina von der Gablentz, Ulrike Krämer, Heinz Handels
2012 J jnl
J. Intell. Inf. Syst.
Oskar Maier, Halina Kwasnicka, Michal Stanek
2010 conf
CLEF (Notebook Papers/LABs/Workshops)
Michal Stanek, Oskar Maier, Halina Kwasnicka
redb/extractors/elf_extractors/elf_segments.py
← Index redb/extractors/elf_extractors/elf_segments.py python
import inspect
import hashlib
import math
from collections import Counter
from datetime import datetime, timezone
from typing import Any, List, Dict

from elftools.elf.elffile import ELFFile
from elftools.common.exceptions import ELFError

from redb.extractors.enum import Tag
from redb.extractors.elf_extractor import ELFExtractor
from redb.models.dataclasses import ELFSegment


class ELFSegmentExtractor(ELFExtractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        elf=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            elf,
        )
        self.elf_segments = []
        self.elastic_index = self.index_prefix + "-elf_segments"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def _is_empty_result(self, extracted_data) -> bool:
        """
        Override: Empty segments is an ERROR, not a valid empty case.
        A valid ELF file must have segments (program headers).
        """
        # Always return False - empty segments should be treated as an error
        return False

    def _calculate_entropy(self, data: bytes) -> float:
        """Calculate Shannon entropy of data."""
        if not data:
            return 0.0

        try:
            # Count frequency of each byte
            byte_counts = Counter(data)
            data_len = len(data)

            # Calculate entropy
            entropy = 0.0
            for count in byte_counts.values():
                if count > 0:
                    frequency = count / data_len
                    entropy -= frequency * math.log2(frequency)

            return entropy
        except Exception as e:
            self.log.error(f"Error calculating entropy: {e}")
            return 0.0

    def _map_segment_type(self, p_type_str: str) -> int:
        """Map segment type string to enum value."""
        type_map = {
            'PT_NULL': 0,
            'PT_LOAD': 1,
            'PT_DYNAMIC': 2,
            'PT_INTERP': 3,
            'PT_NOTE': 4,
            'PT_SHLIB': 5,
            'PT_PHDR': 6,
            'PT_TLS': 7
        }
        return type_map.get(p_type_str, 0)

    def _decode_segment_flags(self, flags: int) -> List[str]:
        """Decode segment flags to human-readable strings."""
        flag_strings = []

        if flags & 0x1:  # PF_X
            flag_strings.append('EXECUTE')
        if flags & 0x2:  # PF_W
            flag_strings.append('WRITE')
        if flags & 0x4:  # PF_R
            flag_strings.append('READ')

        return flag_strings if flag_strings else ['NONE']

    def _extract_segment_data(self, segment) -> ELFSegment:
        """Extract data from a single segment with granular error handling."""
        # Initialize with safe defaults
        segment_type = 0
        segment_type_str = 'unknown'
        segment_flags = 0
        segment_flags_str = ['NONE']
        segment_offset = 0
        segment_vaddr = 0
        segment_paddr = 0
        segment_filesz = 0
        segment_memsz = 0
        segment_align = 0
        segment_entropy = 0.0
        segment_sha256 = ""
        segment_md5 = ""

        # Try to get segment header
        header = None
        try:
            header = segment.header
        except Exception as e:
            self.log.warning(f"Could not access segment header: {e}")
            return ELFSegment(
                segment_type=segment_type, segment_type_str=segment_type_str,
                segment_flags=segment_flags, segment_flags_str=segment_flags_str,
                segment_offset=segment_offset, segment_vaddr=segment_vaddr,
                segment_paddr=segment_paddr, segment_filesz=segment_filesz,
                segment_memsz=segment_memsz, segment_align=segment_align,
                segment_entropy=segment_entropy, segment_sha256=segment_sha256,
                segment_md5=segment_md5
            )

        # Extract segment type
        try:
            p_type_str = header.get('p_type', 'PT_NULL')
            segment_type = self._map_segment_type(p_type_str)
            segment_type_str = p_type_str.replace('PT_', '') if p_type_str.startswith('PT_') else p_type_str
        except Exception as e:
            self.log.warning(f"Could not extract segment type: {e}")

        # Extract segment flags
        try:
            segment_flags = header.get('p_flags', 0)
            segment_flags_str = self._decode_segment_flags(segment_flags)
        except Exception as e:
            self.log.warning(f"Could not extract segment flags: {e}")

        # Extract segment addresses and sizes
        try:
            segment_offset = header.get('p_offset', 0)
        except Exception as e:
            self.log.warning(f"Could not extract segment offset: {e}")

        try:
            segment_vaddr = header.get('p_vaddr', 0)
        except Exception as e:
            self.log.warning(f"Could not extract segment vaddr: {e}")

        try:
            segment_paddr = header.get('p_paddr', 0)
        except Exception as e:
            self.log.warning(f"Could not extract segment paddr: {e}")

        try:
            segment_filesz = header.get('p_filesz', 0)
        except Exception as e:
            self.log.warning(f"Could not extract segment filesz: {e}")

        try:
            segment_memsz = header.get('p_memsz', 0)
        except Exception as e:
            self.log.warning(f"Could not extract segment memsz: {e}")

        try:
            segment_align = header.get('p_align', 0)
        except Exception as e:
            self.log.warning(f"Could not extract segment align: {e}")

        # Calculate entropy and hashes for segment data (most likely to fail)
        try:
            if segment_filesz > 0:
                segment_data = segment.data()
                if segment_data:
                    # Calculate entropy
                    segment_entropy = self._calculate_entropy(segment_data)

                    # Calculate hashes
                    segment_sha256 = hashlib.sha256(segment_data).hexdigest()
                    segment_md5 = hashlib.md5(segment_data).hexdigest()
        except Exception as e:
            self.log.warning(f"Could not read segment data for hashing: {e}")
            # Keep defaults (0.0, "", "")

        return ELFSegment(
            segment_type=segment_type,
            segment_type_str=segment_type_str,
            segment_flags=segment_flags,
            segment_flags_str=segment_flags_str,
            segment_offset=segment_offset,
            segment_vaddr=segment_vaddr,
            segment_paddr=segment_paddr,
            segment_filesz=segment_filesz,
            segment_memsz=segment_memsz,
            segment_align=segment_align,
            segment_entropy=segment_entropy,
            segment_sha256=segment_sha256,
            segment_md5=segment_md5
        )

    def tag(self):
        return Tag.ELF_SEGMENTS.value if hasattr(Tag, 'ELF_SEGMENTS') else "elf_segments"

    def extract(self):
        try:
            self.log.debug(inspect.currentframe().f_code.co_name)

            def extract_segments(elf):
                segments_data = []

                # Iterate through all segments with per-segment error handling
                for segment_index, segment in enumerate(elf.iter_segments()):
                    try:
                        segment_data = self._extract_segment_data(segment)
                        if segment_data:
                            segments_data.append(segment_data)
                        else:
                            self.log.warning(f"Failed to extract data for segment {segment_index}")
                    except Exception as e:
                        self.log.warning(f"Error processing segment {segment_index}: {e}")
                        # Continue processing other segments

                return segments_data

            # Check if file is valid ELF
            if not self._is_elf_file():
                self.log.error(f"No valid ELF file for {self.hash.sha256}")
                return None

            segments_data = self._with_elf_file(extract_segments)
            if segments_data is None:
                return None

            self.elf_segments = segments_data
            return self.elf_segments

        except Exception as e:
            self.log.error(f"Error extracting ELF segments {self.hash.sha256}: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        self.log.debug(inspect.currentframe().f_code.co_name)

        if exporter_type == "ElasticsearchExporter":
            return self.elf_segments
        elif exporter_type == "ClickHouseExporter":
            try:
                if not self.elf_segments:
                    return None

                # Prepare data arrays for all segments
                data = []
                current_time = datetime.now(timezone.utc)
                for segment in self.elf_segments:
                    row = [
                        self.sha256,
                        self.md5,
                        self.sha1,
                        segment.segment_type,
                        segment.segment_type_str,
                        segment.segment_flags,
                        segment.segment_flags_str,
                        segment.segment_offset,
                        segment.segment_vaddr,
                        segment.segment_paddr,
                        segment.segment_filesz,
                        segment.segment_memsz,
                        segment.segment_align,
                        segment.segment_entropy,
                        segment.segment_sha256,
                        segment.segment_md5,
                        current_time
                    ]
                    data.append(row)

                column_names = [
                    'sha256', 'md5', 'sha1',
                    'segment_type', 'segment_type_str', 'segment_flags', 'segment_flags_str',
                    'segment_offset', 'segment_vaddr', 'segment_paddr',
                    'segment_filesz', 'segment_memsz', 'segment_align',
                    'segment_entropy', 'segment_sha256', 'segment_md5',
                    'analysis_date'
                ]

                column_type_names = [
                    'FixedString(64)', 'FixedString(32)', 'FixedString(40)',
                    "Enum8('NULL'=0, 'LOAD'=1, 'DYNAMIC'=2, 'INTERP'=3, 'NOTE'=4, 'SHLIB'=5, 'PHDR'=6, 'TLS'=7)",
                    'LowCardinality(String)',
                    'UInt32',
                    'Array(LowCardinality(String))',
                    'UInt64', 'UInt64', 'UInt64', 'UInt64', 'UInt64', 'UInt64',
                    'Float64',
                    'FixedString(64)', 'FixedString(32)',
                    'DateTime64(3, \'UTC\')'
                ]

                if not data:
                    return None

                return (data, column_names, column_type_names)

            except Exception as e:
                self.log.error(f"Error preparing export data: {e}")
                raise

    def get_clickhouse_table(self) -> str:
        return "redb_elf_segments"