Oscar Dias

20 papers Misc 7Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
Correction: A diel multi-tissue genome-scale metabolic model of Vitis vinifera.
PLoS Comput. Biol.
Marta Sampaio, Miguel Rocha, Oscar Dias
2025 J jnl
Comparative Assessment of Protein Large Language Models for Enzyme Commission Number Prediction.
BMC Bioinform.
João Capela, Maria Zimmermann-Kogadeeva, Aalt D. J. van Dijk, Dick de Ridder, Oscar Dias, Miguel Rocha
2025 J jnl
PhageDPO: A machine-learning based computational framework for identifying phage depolymerases.
Comput. Biol. Medicine
M. Fernanda Vieira, José Duarte, Rita Domingues, Hugo Oliveira, Oscar Dias
2025 J jnl
Predicting precursors of plant specialized metabolites using DeepMol automated machine learning.
J. Integr. Bioinform.
João Capela, João Cheixo, Dick de Ridder, Oscar Dias, Miguel Rocha
2024 J jnl
A diel multi-tissue genome-scale metabolic model of Vitis vinifera.
PLoS Comput. Biol.
Marta Sampaio, Miguel Rocha, Oscar Dias
2024 J jnl
BioISO: An Objective-Oriented Application for Assisting the Curation of Genome-Scale Metabolic Models.
IEEE ACM Trans. Comput. Biol. Bioinform.
Fernando Cruz, João Capela, Eugénio C. Ferreira, Miguel Rocha, Oscar Dias
2023 J jnl
The first multi-tissue genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber.
PLoS Comput. Biol.
Emanuel Cunha, Miguel Silva, Inês Chaves, Hüseyin Demirci, Davide Lagoa, Diogo Lima, Miguel Rocha, Isabel Rocha, Oscar Dias
2022 Misc conf
Exploring Xylella fastidiosa's Metabolic Traits Using a GSM Model of the Phytopathogenic Bacterium.
PACBB
Alexandre Oliveira, Emanuel Cunha, Miguel Silva, Cristiana Faria, Oscar Dias
2022 J jnl
Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool.
J. Integr. Bioinform.
Alexandre Oliveira, Emanuel Cunha, Fernando Cruz, João Capela, João Carlos Sequeira, Marta Sampaio, Cláudia Sampaio, Oscar Dias
2021 J jnl
A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli.
PLoS Comput. Biol.
Alexandre Oliveira, Joana Rodrigues, Eugénio Campos Ferreira, Lígia R. Rodrigues, Oscar Dias
2021 Misc conf
Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database.
PACBB
Alexandre Oliveira, Emanuel Cunha, Fernando Cruz, João Capela, João Carlos Sequeira, Marta Sampaio, Oscar Dias
2020 Misc conf
Reconciliation of Regulatory Data: The Regulatory Networks of Escherichia coli and Bacillus subtilis.
PACBB
Diogo Lima, Fernando Cruz, Miguel Rocha, Oscar Dias
2020 Misc conf
Towards the Reconstruction of the Genome-Scale Metabolic Model of Lactobacillus acidophilus La-14.
PACBB
Emanuel Cunha, Ahmad A. Zeidan, Oscar Dias
2019 Misc conf
Predicting Promoters in Phage Genomes Using Machine Learning Models.
PACBB
Marta Sampaio, Miguel Rocha, Hugo Oliveira, Oscar Dias
2019 J jnl
Predicting promoters in phage genomes using PhagePromoter.
Bioinform.
Marta Sampaio, Miguel Rocha, Hugo Oliveira, Oscar Dias
2019 J jnl
SamPler - a novel method for selecting parameters for gene functional annotation routines.
BMC Bioinform.
Fernando Cruz, Davide Lagoa, João Mendes, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha, Oscar Dias
2019 Misc conf
Towards the Reconstruction of Integrated Genome-Scale Models of Metabolism and Gene Expression.
PACBB
Fernando Cruz, Diogo Lima, José P. Faria, Miguel Rocha, Oscar Dias
2017 J jnl
Genome-Wide Semi-Automated Annotation of Transporter Systems.
IEEE ACM Trans. Comput. Biol. Bioinform.
Oscar Dias, Daniel Gomes, Paulo Vilaça, João G. R. Cardoso, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha
2014 Misc conf
Metagenomic Analysis of the Saliva Microbiome with Merlin.
PACBB
Pedro Barbosa, Oscar Dias, Joel P. Arrais, Miguel Rocha
2008 — conf
Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis.
IWPACBB
José P. Pinto, Oscar Dias, Anália Lourenço, Sónia Carneiro, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha