Osamu Watanabe

27 papers A 1B 1C 3Journal 12Unranked 10
YearRankTypeTitle / Venue / Authors
2025 C conf
PCS
Norishige Fukushima, Yoshihiro Maeda, Yusuke Kameda, Osamu Watanabe
2025 J jnl
CoRR
Jon Sneyers, Jyrki Alakuijala, Luca Versari, Zoltan Szabadka, Sami Boukortt, Amnon Cohen-Tidhar, Moritz Firsching, Evgenii Kliuchnikov, Tal Lev-Ami, Eric Portis, Thomas Richter, Osamu Watanabe
2023 J jnl
IEEE Access
Tejasvee Bisen, Mohammed Javed, P. Nagabhushan, Osamu Watanabe
2022 J jnl
IEICE Trans. Inf. Syst.
Tong Qin, Osamu Watanabe
2021 conf
GCCE
Xuanyu Fang, Osamu Watanabe
2021 J jnl
Supercomput. Front. Innov.
Osamu Watanabe, Kazuhiko Komatsu, Masayuki Sato, Hiroaki Kobayashi
2020 J jnl
Supercomput. Front. Innov.
Takashi Soga, Kenta Yamaguchi, Raghunandan Mathur, Osamu Watanabe, Akihiro Musa, Ryusuke Egawa, Hiroaki Kobayashi
2020 B conf
DCC
Bulla Rajesh, Mohammed Javed, P. Nagabhushan, Osamu Watanabe
2019 conf
GCCE
Osamu Watanabe, David Taubman
2019 conf
MCHPC@SC
Osamu Watanabe, Yuta Hougi, Kazuhiko Komatsu, Masayuki Sato, Akihiro Musa, Hiroaki Kobayashi
2018 J jnl
Supercomput. Front. Innov.
Ilya V. Afanasyev, Alexander S. Antonov, Dmitry A. Nikitenko, Vadim V. Voevodin, Vladimir V. Voevodin, Kazuhiko Komatsu, Osamu Watanabe, Akihiro Musa, Hiroaki Kobayashi
2018 C conf
CLUSTER
Shivanshu Kumar Singh, Kota Sakakura, Sourav Saha, Raghunandan Mathur, Chirag Sharma, Koji Goto, Osamu Watanabe, Akihiro Musa
2018 A conf
SC
Kazuhiko Komatsu, Shintaro Momose, Yoko Isobe, Osamu Watanabe, Akihiro Musa, Mitsuo Yokokawa, Toshikazu Aoyama, Masayuki Sato, Hiroaki Kobayashi
2018 J jnl
J. Supercomput.
Akihiro Musa, Osamu Watanabe, Hiroshi Matsuoka, Hiroaki Hokari, Takuya Inoue, Yoichi Murashima, Yusaku Ohta, Ryota Hino, Shunichi Koshimura, Hiroaki Kobayashi
2017 C conf
CLUSTER
Osamu Watanabe, Akihiro Musa, Hiroaki Hokari, Shivanshu Kumar Singh, Raghunandan Mathur, Hiroaki Kobayashi
2016 J jnl
Int. J. Netw. Comput.
Raghunandan Mathur, Hiroshi Matsuoka, Osamu Watanabe, Akihiro Musa, Ryusuke Egawa, Hiroaki Kobayashi
2016 conf
GCCE
Masaki Kouchi, Osamu Watanabe
2015 conf
CANDAR
Raghunandan Mathur, Hiroshi Matsuoka, Osamu Watanabe, Akihiro Musa, Ryusuke Egawa, Hiroaki Kobayashi
2015 conf
Computer-Aided Diagnosis
Masahiro Oda, Takayuki Kitasaka, Kazuhiro Furukawa, Osamu Watanabe, Takafumi Ando, Yoshiki Hirooka, Hidemi Goto, Kensaku Mori
2014 J jnl
NII Shonan Meet. Rep.
Rodney G. Downey, Kenshi Miyabe, André Nies, Osamu Watanabe
2014 conf
Computing with New Resources
Osamu Watanabe
2013 J jnl
IEICE Trans. Inf. Syst.
Masahiro Oda, Takayuki Kitasaka, Kazuhiro Furukawa, Osamu Watanabe, Takafumi Ando, Hidemi Goto, Kensaku Mori
2012 conf
ANALCO
Osamu Watanabe
2011 conf
Computer-Aided Diagnosis
Masahiro Oda, Takayuki Kitasaka, Kazuhiro Furukawa, Osamu Watanabe, Takafumi Ando, Hidemi Goto, Kensaku Mori
2010 conf
Computer-Aided Diagnosis
Masahiro Oda, Takayuki Kitasaka, Kazuhiro Furukawa, Osamu Watanabe, Takafumi Ando, Hidemi Goto, Kensaku Mori
2008 J jnl
Neurocomputing
Osamu Watanabe
1999 J jnl
Neural Networks
Osamu Watanabe, Kunihiko Fukushima
redb/extractors/extractor.py
← Index redb/extractors/extractor.py python
import hashlib
import inspect
from abc import ABCMeta, abstractmethod
from dataclasses import asdict
from functools import cached_property
from datetime import datetime, timezone
import math
from typing import Counter, List, Optional, Dict, Any, Tuple
from redb import settings
from redb.models.dataclasses import Hash
from .database_exporters import DatabaseExporter, ElasticsearchExporter, ClickHouseExporter, PrintExporter

class Extractor(metaclass=ABCMeta):
    def __init__(
        self,
        filepath: str,
        log: Any,
        exporters: Optional[List[DatabaseExporter]] = None,
        index_prefix: Optional[str] = None,
        source: Optional[str] = None,
        elastic_index: Optional[str] = None,
        known_benign: bool = False,
        known_malicious: bool = False,
        precomputed_hashes: Optional[Dict[str, str]] = None,
    ):
        self.log = log
        self.log.debug(f"Creating {self.__class__.__name__}")
        self.filepath = filepath
        self.source = source
        self.exporters = exporters or []
        self.index_prefix = index_prefix if index_prefix else settings.ELASTIC_BINARIES_COLLECTION
        self.elastic_index = self.index_prefix + (elastic_index if elastic_index else "")
        self.known_benign = known_benign
        self.known_malicious = known_malicious

        # Use precomputed hashes if provided (e.g., from machofile, pefile)
        # Otherwise compute them from binary
        if precomputed_hashes:
            self.md5 = precomputed_hashes.get('md5') or precomputed_hashes.get('MD5')
            self.sha1 = precomputed_hashes.get('sha1') or precomputed_hashes.get('SHA1')
            self.sha256 = precomputed_hashes.get('sha256') or precomputed_hashes.get('SHA256')
        else:
            self.md5 = hashlib.md5(self.binary).hexdigest()
            self.sha1 = hashlib.sha1(self.binary).hexdigest()
            self.sha256 = hashlib.sha256(self.binary).hexdigest()
        self.hash = Hash(self.md5, self.sha1, self.sha256)

    @cached_property
    def binary(self):
        with open(self.filepath, "rb") as f:
            data = f.read()
        return data

    @property
    @abstractmethod
    def tag(self):
        pass

    @abstractmethod
    def extract(self):
        """
        this method defines the extracted data
        """

    @staticmethod
    def process_binary_string(s):
        # Remove \x00 padding
        s = s.rstrip(b"\x00")

        # Check if there are any non-printable characters
        has_non_printable = any(byte < 32 or byte > 126 for byte in s)

        if not has_non_printable:
            # If all characters are printable, decode the string
            return s.decode()
        else:
            # If there are non-printable characters, represent them as \xDD
            return "".join(
                [
                    f"\\x{byte:02x}" if byte < 32 or byte > 126 else chr(byte)
                    for byte in s
                ]
            )

    @staticmethod
    def remove_non_utf8(binary_string):
        decoded = b""
        for i in range(len(binary_string)):
            try:
                # Try to decode each byte
                char = binary_string[i : i + 1].decode("utf-8")
                decoded += char.encode("utf-8")
            except UnicodeDecodeError:
                # Skip this byte if it can't be decoded
                continue
        return decoded

    def calculate_entropy(self, data):
        """Calculate the entropy of a chunk of data.
        Based on pefile.SectionStructure.entropy_H.
        """
        # self.log.debug(inspect.currentframe().f_code.co_name)
        if not data:
            return 0.0

        if type(data) == str:
            counts = Counter(data)
            frequencies = ((i / len(data)) for i in counts.values())
            return - sum(f * math.log(f, 2) for f in frequencies)
        else:
            occurences = Counter(bytearray(data))
            entropy = 0
            for x in occurences.values():
                p_x = float(x) / len(data)
                entropy -= p_x * math.log(p_x, 2)
            return entropy

    @abstractmethod
    def prepare_export_data(self, exporter_type: str) -> Tuple[List[Any], List[str], List[str]]:
        """
        Prepare data for specific export type
        Returns:
            Tuple containing:
            - data: List of values to insert
            - column_names: List of column names
            - column_type_names: List of column types
        """
        pass

    def export_data(self):
        """Export data to all configured exporters

        Returns:
            True: Export succeeded
            False: Export failed (actual error)
            None: No data to export (not an error, e.g., no overlay, no signature)
        """
        self.log.debug(inspect.currentframe().f_code.co_name)
        success = True
        extracted_data = self.extract()

        if extracted_data is None:
            self.log.debug("extract() returned None, skipping export")
            return None  # No data to export, not a failure
            
        for exporter in self.exporters:
            if isinstance(exporter, PrintExporter):
                # For PrintExporter, we pass the extracted data directly
                success &= exporter.export(extracted_data)
            else:
                # Get the data prepared for this specific exporter type
                export_data = self.prepare_export_data(exporter.__class__.__name__)
                
                if export_data is None:
                    self.log.debug(f"prepare_export_data returned None for {exporter.__class__.__name__}")
                    return False
                
                if isinstance(exporter, ElasticsearchExporter):
                    success &= exporter.export(
                        export_data,
                        index=self.elastic_index,
                        tag=self.tag(),
                        hashes=asdict(self.hash),
                        known_benign=self.known_benign,
                        known_malicious=self.known_malicious
                    )
                elif isinstance(exporter, ClickHouseExporter):
                    # For ClickHouse, we need to pass the table name and the prepared data
                    success &= exporter.export(
                        export_data,
                        table=self.get_clickhouse_table(),
                        # Add these parameters explicitly
                        column_names=export_data[1] if isinstance(export_data, tuple) else None,
                        column_type_names=export_data[2] if isinstance(export_data, tuple) else None
                    )
                
        return success

    @abstractmethod
    def get_clickhouse_table(self) -> str:
        """Return the appropriate ClickHouse table name"""
        pass
    # def export_to_elastic(self, list_of_dataclasses, tag=None):
    #     self.log.debug(inspect.currentframe().f_code.co_name)

    #     if not isinstance(list_of_dataclasses, list):
    #         self.log.error("Called export_to_elastic wrongly")

    #     now_t = datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S")
    #     for dataclass_ in list_of_dataclasses:
    #         if not settings.ELASTIC_CLIENT.ping():
    #             self.log.error("[CONNECTION ERROR] ping to elastic failed")
            
    #         # Convert dataclass to dict and filter out None values
    #         document = {k: v for k, v in asdict(dataclass_).items() if v is not None}
            
    #         if tag:
    #             document["tag"] = [tag, self.tag()]
    #         else:
    #             document["tag"] = self.tag()
    #         hashes = asdict(self.hash)
    #         document |= hashes
    #         document["timestamp_utc"] = now_t
    #         # document["source"] = self.source
    #         document["known_benign"] = self.known_benign
    #         document["known_malicious"] = self.known_malicious

    #         if "_id" in document:
    #             tmp_id = document.pop("_id") + document["sha256"]
    #             _id = hashlib.sha256(tmp_id.encode()).hexdigest()
    #         else:
    #             _id = document["sha256"]

    #         # self.log.debug(f"[DEBUG] about to export {type(document)} {document}")
    #         try:
    #             doc_dump = json.dumps(document)
    #         except TypeError as e:
    #             self.log.error(
    #                 f"Failed export of document. " f"full document: {document}"
    #             )
    #             raise e

    #         # body={"doc": doc_dump,
    #         #       "doc_as_upsert": True  # Create the document if it doesn't exist
    #         # }

    #         # Check if the index exists, and create it if it doesn't
    #         # if not settings.ELASTIC_CLIENT.indices.exists(index=self.elastic_index):
    #         #     settings.ELASTIC_CLIENT.indices.create(index=self.elastic_index)
    #         # pprint(doc_dump) #DEBUG
    #         # print("[DEBUG] _id: " + _id)
    #         # print("[DEBUG] index: " + self.elastic_index)
    #         settings.ELASTIC_CLIENT.index(
    #             index=self.elastic_index, id=_id, document=doc_dump
    #         )