Osamu Maruyama

58 papers A* 1A 1B 8C 4Misc 3Journal 18Unranked 23

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	CDACHIE: chromatin domain annotation by integrating chromatin interaction and epigenomic data with contrastive learning. Bioinform. Asato Yoshinaga, Osamu Maruyama
2025	J	`jnl`	Class-balanced negative training sets for improving classifier model predictions of enhancer-promoter interactions. BMC Bioinform. Osamu Maruyama, Tsukasa Koga
2024	J	`jnl`	Preservation of emotional context in tweet embeddings on social networking sites. Artif. Life Robotics Osamu Maruyama, Asato Yoshinaga, Ken-Ichi Sawai
2023	—	`conf`	CBOEP: Generating negative enhancer-promoter interactions to train classifiers. BCB Tsukasa Koga, Osamu Maruyama
2022	J	`jnl`	CMIC: predicting DNA methylation inheritance of CpG islands with embedding vectors of variable-length k-mers. BMC Bioinform. Osamu Maruyama, Yinuo Li, Hiroki Narita, Hidehiro Toh, Wan Kin Au Yeung, Hiroyuki Sasaki
2021	J	`jnl`	A convolutional neural network-based regression model to infer the epigenetic crosstalk responsible for CG methylation patterns. BMC Bioinform. Wan Kin Au Yeung, Osamu Maruyama, Hiroyuki Sasaki
2019	C	`conf`	DegSampler3: Pairwise Dependency Model in Degradation Motif Site Prediction of Substrate Protein Sequences. BIBE Osamu Maruyama, Fumiko Matsuzaki
2018	C	`conf`	DegSampler: Collapsed Gibbs Sampler for Detecting E3 Binding Sites. BIBE Osamu Maruyama, Fumiko Matsuzaki
2018	—	`conf`	Development of an Intelligent Ventricular Assist Device with a Function of Sensorless Thrombus Detection. EMBC Takuro Maruyama, Tomotaka Murashige, Daisuke Sakota, Osamu Maruyama, Wataru Hijikata
2017	J	`jnl`	RocSampler: regularizing overlapping protein complexes in protein-protein interaction networks. BMC Bioinform. Osamu Maruyama, Yuki Kuwahara
2016	—	`conf`	Reaction mechanism of blood coagulation factors in shear flow field. EMBC Koki Kawakami, Daisuke Sakota, Ryo Kosaka, Masahiro Nishida, Yasuo Kawaguchi, Osamu Maruyama
2016	—	`conf`	RocSampler: Regularizing overlapping protein complexes in protein-protein interaction networks. ICCABS Osamu Maruyama, Yuki Kuwahara
2015	—	`conf`	Bearing gap adjustment for improvement of levitation performance in a hydrodynamically levitated centrifugal blood pump. EMBC Ryo Kosaka, Fumihiko Yoshida, Masahiro Nishida, Osamu Maruyama, Yasuo Kawaguchi, Takashi Yamane
2015	—	`conf`	Development of a photon-cell interactive monte carlo simulation for non-invasive measurement of blood glucose level by Raman spectroscopy. EMBC Daisuke Sakota, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama
2015	—	`conf`	Evaluation of erythrocyte flow at a bearing gap in a hydrodynamically levitated centrifugal blood pump. EMBC Tomotaka Murashige, Ryo Kosaka, Daisuke Sakota, Masahiro Nishida, Yasuo Kawaguchi, Takashi Yamane, Osamu Maruyama
2015	—	`conf`	Hyperspectral imaging of vascular anastomosis associated with blood flow and hemoglobin concentration. EMBC Daisuke Sakota, Eiki Nagaoka, Osamu Maruyama
2015	B	`conf`	Regularizing predicted complexes by mutually exclusive protein-protein interactions. ASONAM Osamu Maruyama, Limsoon Wong
2014	—	`conf`	A scale-free structure prior for Bayesian inference of Gaussian graphical models. BIBM Osamu Maruyama, Shota Shikita
2014	J	`jnl`	Discovery of small protein complexes from PPI networks with size-specific supervised weighting. BMC Syst. Biol. Chern Han Yong, Osamu Maruyama, Limsoon Wong
2014	J	`jnl`	Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels. BMC Bioinform. Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu
2014	J	`jnl`	ReSAPP: Predicting overlapping protein complexes by merging multiple-sampled partitions of proteins. J. Bioinform. Comput. Biol. So Kobiki, Osamu Maruyama
2013	—	`conf`	Effect of impeller flow path on pump performance and impeller stability of the monopivot circulatory pump. EMBC Masahiro Nishida, Kento Nakayama, Ryo Kosaka, Osamu Maruyama, Yasuo Kawaguchi, Katsuyuki Kuwana, Takashi Yamane
2013	—	`conf`	Fluid dynamic design for low hemolysis in a hydrodynamically levitated centrifugal blood pump. EMBC Tomotaka Murashige, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama, Takashi Yamane, Katsuyuki Kuwana, Yasuo Kawaguchi
2013	J	`jnl`	Heterodimeric protein complex identification by naïve Bayes classifiers. BMC Bioinform. Osamu Maruyama
2013	—	`conf`	Infrequent, Unexpected, and Contrast Pattern Discovery from Bacterial Genomes by Genome-wide Comparative Analysis. BIOINFORMATICS Daisuke Ikeda, Osamu Maruyama, Satoru Kuhara
2013	—	`conf`	Noninvasive blood-flow meter using a curved cannula with zero compensation for an axial flow blood pump. EMBC Ryo Kosaka, Kyohei Fukuda, Masahiro Nishida, Osamu Maruyama, Takashi Yamane
2013	J	`jnl`	PPSampler2: Predicting protein complexes more accurately and efficiently by sampling. BMC Syst. Biol. Chasanah Kusumastuti Widita, Osamu Maruyama
2013	—	`conf`	Risk analysis and detection of thrombosis by measurement of electrical resistivity of blood. EMBC Achyut Sapkota, Yuta Asakura, Osamu Maruyama, Ryo Kosaka, Takashi Yamane, Masahiro Takei
2013	—	`conf`	Simultaneous determination of hemolysis and hematocrit in extracorporeal circulation by plasma surface reflectance spectroscopy. EMBC Daisuke Sakota, Yuki Kani, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama
2013	J	`jnl`	The Purity Measure for genomic Regions leads to Horizontally Transferred genes. J. Bioinform. Comput. Biol. Yuta Taniguchi, Yasuhiro Yamada, Osamu Maruyama, Satoru Kuhara, Daisuke Ikeda
2011	—	`conf`	Heterodimeric protein complex identification. BCB Osamu Maruyama
2011	—	`conf`	Improvement of hemocompatibility for hydrodynamic levitation centrifugal pump by optimizing step bearings. EMBC Ryo Kosaka, Toru Yada, Masahiro Nishida, Osamu Maruyama, Takashi Yamane
2011	—	`conf`	Noninvasive miniaturized mass-flow meter using a curved cannula for implantable axial flow blood pump. EMBC Ryo Kosaka, Masahiro Nishida, Osamu Maruyama, Takashi Yamane
2010	—	`conf`	NWE: Node-weighted expansion for protein complex prediction using random walk distances. BIBM Osamu Maruyama, Ayaka Chihara
2010	—	`conf`	NWE: Node-weighted expansion for protein complex prediction using random walk distances. BIBM Workshops Osamu Maruyama, Ayaka Chihara
2008	—	`conf`	Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology Annotations. BIBM Osamu Maruyama, Hideki Hirakawa, Takao Iwayanagi, Yoshiko Ishida, Shizu Takeda, Jun Otomo, Satoru Kuhara
2005	Misc	`conf`	Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides. International Conference on Computational Science (2) Osamu Maruyama, Akiko Matsuda, Satoru Kuhara
2005	J	`jnl`	Reconstructing phylogenetic trees of prokaryote genomes by randomly sampling oligopeptides. Int. J. Bioinform. Res. Appl. Osamu Maruyama, Akiko Matsuda, Satoru Kuhara
2004	Misc	`conf`	Extensive Search for Discriminative Features of Alternative Splicing. Pacific Symposium on Biocomputing Hiroki Sakai, Osamu Maruyama
2004	C	`conf`	Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting. WABI Daichi Shigemizu, Osamu Maruyama
2003	C	`conf`	Finding optimal degenerate patterns in DNA sequences. ECCB Daisuke Shinozaki, Tatsuya Akutsu, Osamu Maruyama
2003	J	`jnl`	Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model. Theor. Comput. Sci. Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
2002	J	`jnl`	Extensive feature detection of N-terminal protein sorting signals. Bioinform. Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano
2002	—	`conf`	Fast Algorithm for Extracting Multiple Unordered Short Motifs Using Bit Operations. JCIS Osamu Maruyama, Satoru Kuhara, Hideo Bannai, Satoru Miyano, Yoshinori Tamada
2002	J	`jnl`	Fast algorithm for extracting multiple unordered short motifs using bit operations. Inf. Sci. Osamu Maruyama, Hideo Bannai, Yoshinori Tamada, Satoru Kuhara, Satoru Miyano
2002	—	`conf`	Foundations of Designing Computational Knowledge Discovery Processes. Progress in Discovery Science Yoshinori Tamada, Hideo Bannai, Osamu Maruyama, Satoru Miyano
2002	B	`conf`	Toward Drawing an Atlas of Hypothesis Classes: Approximating a Hypothesis via Another Hypothesis Model. Discovery Science Osamu Maruyama, Takayoshi Shoudai, Satoru Miyano
2001	J	`jnl`	HypothesisCreator: Concepts for Accelerating the Computational Knowledge Discovery Process. Electron. Trans. Artif. Intell. Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Satoru Miyano
2001	B	`conf`	Learning Conformation Rules. Discovery Science Osamu Maruyama, Takayoshi Shoudai, Emiko Furuichi, Satoru Kuhara, Satoru Miyano
2001	B	`conf`	VML: A View Modeling Language for Computational Knowledge Discovery. Discovery Science Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Satoru Miyano
2001	Misc	`conf`	Views: Fundamental Building Blocks in the Process of Knowledge Discovery. FLAIRS Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano
1999	B	`conf`	Designing Views in HypothesisCreator: System for Assisting in Discovery. Discovery Science Osamu Maruyama, Tomoyuki Uchida, Kim Lan Sim, Satoru Miyano
1998	A*	`conf`	Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions. SODA Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
1998	B	`conf`	Toward Genomic Hypothesis Creator: View Designer for Discovery. Discovery Science Osamu Maruyama, Tomoyuki Uchida, Takayoshi Shoudai, Satoru Miyano
1996	A	`conf`	Extracting Best Consensus Motifs from Positive and Negative Examples. STACS Erika Tateishi, Osamu Maruyama, Satoru Miyano
1996	J	`jnl`	Inferring a Tree from Walks. Theor. Comput. Sci. Osamu Maruyama, Satoru Miyano
1995	B	`conf`	Graph Inference from a Walk for TRees of Bounded Degree 3 is NP-Complete. MFCS Osamu Maruyama, Satoru Miyano
1992	B	`conf`	Inferring a Tree from Walks. MFCS Osamu Maruyama, Satoru Miyano