Osamu Maruyama

58 papers A* 1A 1B 8C 4Misc 3Journal 18Unranked 23
YearRankTypeTitle / Venue / Authors
2025 J jnl
Bioinform.
Asato Yoshinaga, Osamu Maruyama
2025 J jnl
BMC Bioinform.
Osamu Maruyama, Tsukasa Koga
2024 J jnl
Artif. Life Robotics
Osamu Maruyama, Asato Yoshinaga, Ken-Ichi Sawai
2023 conf
BCB
Tsukasa Koga, Osamu Maruyama
2022 J jnl
BMC Bioinform.
Osamu Maruyama, Yinuo Li, Hiroki Narita, Hidehiro Toh, Wan Kin Au Yeung, Hiroyuki Sasaki
2021 J jnl
BMC Bioinform.
Wan Kin Au Yeung, Osamu Maruyama, Hiroyuki Sasaki
2019 C conf
BIBE
Osamu Maruyama, Fumiko Matsuzaki
2018 C conf
BIBE
Osamu Maruyama, Fumiko Matsuzaki
2018 conf
EMBC
Takuro Maruyama, Tomotaka Murashige, Daisuke Sakota, Osamu Maruyama, Wataru Hijikata
2017 J jnl
BMC Bioinform.
Osamu Maruyama, Yuki Kuwahara
2016 conf
EMBC
Koki Kawakami, Daisuke Sakota, Ryo Kosaka, Masahiro Nishida, Yasuo Kawaguchi, Osamu Maruyama
2016 conf
ICCABS
Osamu Maruyama, Yuki Kuwahara
2015 conf
EMBC
Ryo Kosaka, Fumihiko Yoshida, Masahiro Nishida, Osamu Maruyama, Yasuo Kawaguchi, Takashi Yamane
2015 conf
EMBC
Daisuke Sakota, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama
2015 conf
EMBC
Tomotaka Murashige, Ryo Kosaka, Daisuke Sakota, Masahiro Nishida, Yasuo Kawaguchi, Takashi Yamane, Osamu Maruyama
2015 conf
EMBC
Daisuke Sakota, Eiki Nagaoka, Osamu Maruyama
2015 B conf
ASONAM
Osamu Maruyama, Limsoon Wong
2014 conf
BIBM
Osamu Maruyama, Shota Shikita
2014 J jnl
BMC Syst. Biol.
Chern Han Yong, Osamu Maruyama, Limsoon Wong
2014 J jnl
BMC Bioinform.
Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu
2014 J jnl
J. Bioinform. Comput. Biol.
So Kobiki, Osamu Maruyama
2013 conf
EMBC
Masahiro Nishida, Kento Nakayama, Ryo Kosaka, Osamu Maruyama, Yasuo Kawaguchi, Katsuyuki Kuwana, Takashi Yamane
2013 conf
EMBC
Tomotaka Murashige, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama, Takashi Yamane, Katsuyuki Kuwana, Yasuo Kawaguchi
2013 J jnl
BMC Bioinform.
Osamu Maruyama
2013 conf
BIOINFORMATICS
Daisuke Ikeda, Osamu Maruyama, Satoru Kuhara
2013 conf
EMBC
Ryo Kosaka, Kyohei Fukuda, Masahiro Nishida, Osamu Maruyama, Takashi Yamane
2013 J jnl
BMC Syst. Biol.
Chasanah Kusumastuti Widita, Osamu Maruyama
2013 conf
EMBC
Achyut Sapkota, Yuta Asakura, Osamu Maruyama, Ryo Kosaka, Takashi Yamane, Masahiro Takei
2013 conf
EMBC
Daisuke Sakota, Yuki Kani, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama
2013 J jnl
J. Bioinform. Comput. Biol.
Yuta Taniguchi, Yasuhiro Yamada, Osamu Maruyama, Satoru Kuhara, Daisuke Ikeda
2011 conf
BCB
Osamu Maruyama
2011 conf
EMBC
Ryo Kosaka, Toru Yada, Masahiro Nishida, Osamu Maruyama, Takashi Yamane
2011 conf
EMBC
Ryo Kosaka, Masahiro Nishida, Osamu Maruyama, Takashi Yamane
2010 conf
BIBM
Osamu Maruyama, Ayaka Chihara
2010 conf
BIBM Workshops
Osamu Maruyama, Ayaka Chihara
2008 conf
BIBM
Osamu Maruyama, Hideki Hirakawa, Takao Iwayanagi, Yoshiko Ishida, Shizu Takeda, Jun Otomo, Satoru Kuhara
2005 Misc conf
International Conference on Computational Science (2)
Osamu Maruyama, Akiko Matsuda, Satoru Kuhara
2005 J jnl
Int. J. Bioinform. Res. Appl.
Osamu Maruyama, Akiko Matsuda, Satoru Kuhara
2004 Misc conf
Pacific Symposium on Biocomputing
Hiroki Sakai, Osamu Maruyama
2004 C conf
WABI
Daichi Shigemizu, Osamu Maruyama
2003 C conf
ECCB
Daisuke Shinozaki, Tatsuya Akutsu, Osamu Maruyama
2003 J jnl
Theor. Comput. Sci.
Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
2002 J jnl
Bioinform.
Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano
2002 conf
JCIS
Osamu Maruyama, Satoru Kuhara, Hideo Bannai, Satoru Miyano, Yoshinori Tamada
2002 J jnl
Inf. Sci.
Osamu Maruyama, Hideo Bannai, Yoshinori Tamada, Satoru Kuhara, Satoru Miyano
2002 conf
Progress in Discovery Science
Yoshinori Tamada, Hideo Bannai, Osamu Maruyama, Satoru Miyano
2002 B conf
Discovery Science
Osamu Maruyama, Takayoshi Shoudai, Satoru Miyano
2001 J jnl
Electron. Trans. Artif. Intell.
Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Satoru Miyano
2001 B conf
Discovery Science
Osamu Maruyama, Takayoshi Shoudai, Emiko Furuichi, Satoru Kuhara, Satoru Miyano
2001 B conf
Discovery Science
Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Satoru Miyano
2001 Misc conf
FLAIRS
Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano
1999 B conf
Discovery Science
Osamu Maruyama, Tomoyuki Uchida, Kim Lan Sim, Satoru Miyano
1998 A* conf
SODA
Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
1998 B conf
Discovery Science
Osamu Maruyama, Tomoyuki Uchida, Takayoshi Shoudai, Satoru Miyano
1996 A conf
STACS
Erika Tateishi, Osamu Maruyama, Satoru Miyano
1996 J jnl
Theor. Comput. Sci.
Osamu Maruyama, Satoru Miyano
1995 B conf
MFCS
Osamu Maruyama, Satoru Miyano
1992 B conf
MFCS
Osamu Maruyama, Satoru Miyano
redb/utils/sort_files_by_type.py
← Index redb/utils/sort_files_by_type.py python
import os
import sys
from collections import defaultdict
import tempfile
from magika import Magika
import py7zr
import pyzipper
import shutil

"""
This script is used to sort files by their type. 
It reads all the files in the provided directory and splits them into different 
directories based on their type. Mainly, it classifies the files into the following types:
- PE Binaries
- Mach-O Binaries
- ELF Binaries
- APK 
- Other Files

It outputs the count of files for each file extension and file type.

Command line example:
nohup python3 sort_files_by_type.py /mnt/samples/consilience/malware/vx-bazaar-expanded/Bazaar.2020.12 \
    /mnt/samples/consilience/malware/_sorted_samples/vx-bazaar/2020/ > \
    /mnt/samples/consilience/malware/ops-logs/20241014-SORT_FILES-bazaar_2020.12.output.log 2>&1 &
"""


def process_zip_file(filepath):
    print(f"[INFO] - Processing zip file: {filepath}")
    with tempfile.TemporaryDirectory() as temp_dir:
        try:
            with pyzipper.AESZipFile(filepath) as zf:
                zf.pwd = b"infected"
                filename = zf.namelist()[0]
                zf.extractall(temp_dir)
                extracted_zip_path = os.path.join(temp_dir, filename)
                return process_binary_file(extracted_zip_path)
        except Exception as e:
            print(f"[ERR] - Error processing zip file {filepath}: {str(e)}")
            return None


def process_7z_file(filepath):
    print(f"[INFO] - Processing 7z file: {filepath}")
    with tempfile.TemporaryDirectory() as temp_dir:
        try:
            with py7zr.SevenZipFile(filepath, mode="r", password="infected") as z:
                z.extractall(path=temp_dir)
                for root, _, files in os.walk(temp_dir):
                    for file in files:
                        extracted_file_path = os.path.join(root, file)
                        return process_binary_file(extracted_file_path)
        except Exception as e:
            print(f"[ERR] - Error processing 7z file {filepath}: {str(e)}")
            return None


def process_binary_file(filepath):
    print(f"[INFO] - Processing binary file: {filepath}")
    try:
        with open(filepath, "rb") as f:
            data = f.read(512 * 1024)  # 512KB
        return Magika().identify_bytes(data).output.ct_label
    except Exception as e:
        print(f"[ERR] - Error processing binary file {filepath}: {str(e)}")
        return "ERROR"


def count_file_extensions(path, dest_dir):
    # A defaultdict to store file extension counts
    extension_count = defaultdict(int)
    filetype_count = defaultdict(int)
    tot_files = 0

    # Walk through the directory
    for root, dirs, files in os.walk(path):
        for file in files:
            if file.startswith("."):
                continue

            tot_files += 1
            # Split the file extension from the file name
            _, ext = os.path.splitext(file)
            ext = ext.lower()

            # Count the extensions
            extension_count[ext] += 1
            filepath = os.path.join(root, file)
            filetype = ""

            if ext == ".7z":
                filetype = process_7z_file(filepath)
            elif ext == ".zip":
                filetype = process_zip_file(filepath)
            else:
                filetype = process_binary_file(filepath)

            filetype_count[filetype] += 1

            if filetype == "pebin":
                dest = os.path.join(dest_dir, "pebin")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            elif filetype == "macho":
                dest = os.path.join(dest_dir, "macho")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            elif filetype == "elf":
                dest = os.path.join(dest_dir, "elf")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            elif filetype == "apk":
                dest = os.path.join(dest_dir, "apk")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            else:
                dest = os.path.join(dest_dir, "other")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            print(f"[STATUS] - Progres: {tot_files}/{len(files)} files processed")

    # Print the results
    # print("- File Extension Statistics:")
    # for ext, count in extension_count.items():
    #     if ext:  # To exclude files with no extension
    #         print(f"\t{ext}: {count} files")

    # if "" in extension_count:
    #     print(f'\t{extension_count[""]} files with no extension')

    print(f"- Total Number of Files: {tot_files}")
    print("\n- File Type Statistics:")
    for filetype, count in sorted(filetype_count.items()):
        print(f"\t{filetype:<15}{count:>8}")


if __name__ == "__main__":
    # Check if the path was passed as a command-line argument
    if len(sys.argv) != 3:
        print("Usage: python3 script.py <input_path> <dest_dir>")
        sys.exit(1)

    # Get the path from the command-line arguments
    input_path = sys.argv[1]
    dest_dir = sys.argv[2]

    # Check if the provided path is valid
    if not os.path.isdir(input_path):
        print(f"The path '{input_path}' is not a valid directory.")
        sys.exit(1)

    # Call the function to count file extensions
    count_file_extensions(input_path, dest_dir)