Orkun S. Soyer

12 papers C 1Misc 1Journal 8Unranked 2
YearRankTypeTitle / Venue / Authors
2018 J jnl
MetQy - an R package to query metabolic functions of genes and genomes.
Bioinform.
Andrea S. Martinez-Vernon, Frederick Farrell, Orkun S. Soyer
2016 J jnl
Enzyme Sequestration as a Tuning Point in Controlling Response Dynamics of Signalling Networks.
PLoS Comput. Biol.
Song Feng, Julien F. Ollivier, Orkun S. Soyer
2014 J jnl
Phosphate Sink Containing Two-Component Signaling Systems as Tunable Threshold Devices.
PLoS Comput. Biol.
Munia Amin, Varun B. Kothamachu, Elisenda Feliu, Birgit E. Scharf, Steven L. Porter, Orkun S. Soyer
2013 J jnl
Phosphorelays Provide Tunable Signal Processing Capabilities for the Cell.
PLoS Comput. Biol.
Varun B. Kothamachu, Elisenda Feliu, Carsten Wiuf, Luca Cardelli, Orkun S. Soyer
2013 J jnl
Split Histidine Kinases Enable Ultrasensitivity and Bistability in Two-Component Signaling Networks.
PLoS Comput. Biol.
Munia Amin, Steven L. Porter, Orkun S. Soyer
2012 — conf
On the role of ultrasensitivity in biomolecular control systems.
CDC
Francesco Montefusco, Arno Steinacher, Ozgur E. Akman, Declan G. Bates, Orkun S. Soyer
2010 J jnl
Evolution under Fluctuating Environments Explains Observed Robustness in Metabolic Networks.
PLoS Comput. Biol.
Orkun S. Soyer, Thomas Pfeiffer
2008 J jnl
Evolution of Taxis Responses in Virtual Bacteria: Non-Adaptive Dynamics.
PLoS Comput. Biol.
Richard A. Goldstein, Orkun S. Soyer
2008 J jnl
Evolving BlenX programs to simulate the evolution of biological networks.
Theor. Comput. Sci.
Lorenzo Dematté, Corrado Priami, Alessandro Romanel, Orkun S. Soyer
2008 C conf
In silico evolution of chemotaxis.
ALIFE
Richard A. Goldstein, Orkun S. Soyer
2007 — conf
A Formal and Integrated Framework to Simulate Evolution of Biological Pathways.
CMSB
Lorenzo Dematté, Corrado Priami, Alessandro Romanel, Orkun S. Soyer
2002 Misc conf
Using Evolutionary Methods to Study G-Protein Coupled Receptors.
Pacific Symposium on Biocomputing
Orkun S. Soyer, Matthew W. Dimmic, Richard R. Neubig, Richard A. Goldstein