Orcun Goksel - RankMe

138 papers A* 2A 1B 2Journal 78Unranked 50

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	FGGP: Fixed-Rate Gradient-First Gradual Pruning. SCIA (1) Lingkai Zhu, Can Deniz Bezek, Orcun Goksel
2025	J	`jnl`	Image-Based Metrics in Ultrasound for Estimation of Global Speed-of-Sound. CoRR Roman Denkin, Orcun Goksel
2025	J	`jnl`	Joint semi-supervised and contrastive learning enables domain generalization and multi-domain segmentation. Medical Image Anal. Alvaro Gomariz, Yusuke Kikuchi, Yun Yvonna Li, Thomas Albrecht, Andreas Maunz, Daniela Ferrara, Huanxiang Lu, Orcun Goksel
2025	J	`jnl`	Lean Unet: A Compact Model for Image Segmentation. CoRR Ture Hassler, Ida Åkerholm, Marcus Nordström, Gabriele Balletti, Orcun Goksel
2025	J	`jnl`	Learning the Imaging Model of Speed-of-Sound Reconstruction via a Convolutional Formulation. IEEE Trans. Medical Imaging Can Deniz Bezek, Maxim Haas, Richard Rau, Orcun Goksel
2025	J	`jnl`	Uncertainty Estimation for Trust Attribution to Speed-of-Sound Reconstruction with Variational Networks. CoRR Sonia Laguna, Lin Zhang, Can Deniz Bezek, Monika Farkas, Dieter Schweizer, Rahel A. Kubik-Huch, Orcun Goksel
2025	J	`jnl`	Uncertainty estimation for trust attribution to speed-of-sound reconstruction with variational networks. Int. J. Comput. Assist. Radiol. Surg. Sonia Laguna, Lin Zhang, Can Deniz Bezek, Monika Farkas, Dieter Schweizer, Rahel A. Kubik-Huch, Orcun Goksel
2024	J	`jnl`	FGGP: Fixed-Rate Gradient-First Gradual Pruning. CoRR Lingkai Zhu, Can Deniz Bezek, Orcun Goksel
2024	J	`jnl`	Generative feature-driven image replay for continual learning. Image Vis. Comput. Kevin Thandiackal, Tiziano Portenier, Andrea Giovannini, Maria Gabrani, Orcun Goksel
2024	J	`jnl`	HDRfeat: A feature-rich network for high dynamic range image reconstruction. Pattern Recognit. Lett. Lingkai Zhu, Fei Zhou, Bozhi Liu, Orcun Goksel
2024	J	`jnl`	Joint semi-supervised and contrastive learning enables zero-shot domain-adaptation and multi-domain segmentation. CoRR Alvaro Gomariz, Yusuke Kikuchi, Yun Yvonna Li, Thomas Albrecht, Andreas Maunz, Daniela Ferrara, Huanxiang Lu, Orcun Goksel
2024	J	`jnl`	Multi-Scale Feature Alignment for Continual Learning of Unlabeled Domains. IEEE Trans. Medical Imaging Kevin Thandiackal, Luigi Piccinelli, Rajarsi Gupta, Pushpak Pati, Orcun Goksel
2023	J	`jnl`	Generative appearance replay for continual unsupervised domain adaptation. CoRR Boqi Chen, Kevin Thandiackal, Pushpak Pati, Orcun Goksel
2023	J	`jnl`	Generative appearance replay for continual unsupervised domain adaptation. Medical Image Anal. Boqi Chen, Kevin Thandiackal, Pushpak Pati, Orcun Goksel
2023	J	`jnl`	Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains. CoRR Kevin Thandiackal, Luigi Piccinelli, Pushpak Pati, Orcun Goksel
2023	J	`jnl`	Unpaired Translation from Semantic Label Maps to Images by Leveraging Domain-Specific Simulations. CoRR Lin Zhang, Tiziano Portenier, Orcun Goksel
2023	J	`jnl`	Weakly Supervised Joint Whole-Slide Segmentation and Classification in Prostate Cancer. CoRR Pushpak Pati, Guillaume Jaume, Zeineb Ayadi, Kevin Thandiackal, Behzad Bozorgtabar, Maria Gabrani, Orcun Goksel
2023	J	`jnl`	Weakly supervised joint whole-slide segmentation and classification in prostate cancer. Medical Image Anal. Pushpak Pati, Guillaume Jaume, Zeineb Ayadi, Kevin Thandiackal, Behzad Bozorgtabar, Maria Gabrani, Orcun Goksel
2022	—	`conf`	Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images. ECCV (21) Kevin Thandiackal, Boqi Chen, Pushpak Pati, Guillaume Jaume, Drew F. K. Williamson, Maria Gabrani, Orcun Goksel
2022	J	`jnl`	Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images. CoRR Kevin Thandiackal, Boqi Chen, Pushpak Pati, Guillaume Jaume, Drew F. K. Williamson, Maria Gabrani, Orcun Goksel
2022	J	`jnl`	Hierarchical graph representations in digital pathology. Medical Image Anal. Pushpak Pati, Guillaume Jaume, Antonio Foncubierta-Rodríguez, Florinda Feroce, Anna Maria Anniciello, Giosue Scognamiglio, Nadia Brancati, Maryse Fiche, Estelle Dubruc, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Jean-Philippe Thiran, Maria Frucci, Orcun Goksel, Maria Gabrani
2022	—	`conf`	Unsupervised Domain Adaptation with Contrastive Learning for OCT Segmentation. MICCAI (8) Alvaro Gomariz, Huanxiang Lu, Yun Yvonna Li, Thomas Albrecht, Andreas Maunz, Fethallah Benmansour, Alessandra M. Valcarcel, Jennifer Luu, Daniela Ferrara, Orcun Goksel
2022	J	`jnl`	Unsupervised Domain Adaptation with Contrastive Learning for OCT Segmentation. CoRR Alvaro Gomariz, Huanxiang Lu, Yun Yvonna Li, Thomas Albrecht, Andreas Maunz, Fethallah Benmansour, Alessandra M. Valcarcel, Jennifer Luu, Daniela Ferrara, Orcun Goksel
2021	J	`jnl`	Active learning for segmentation based on Bayesian sample queries. Knowl. Based Syst. Firat Özdemir, Zixuan Peng, Philipp Fürnstahl, Christine Tanner, Orcun Goksel
2021	—	`conf`	Content-Preserving Unpaired Translation from Simulated to Realistic Ultrasound Images. MICCAI (8) Devavrat Tomar, Lin Zhang, Tiziano Portenier, Orcun Goksel
2021	J	`jnl`	Content-Preserving Unpaired Translation from Simulated to Realistic Ultrasound Images. CoRR Devavrat Tomar, Lin Zhang, Tiziano Portenier, Orcun Goksel
2021	J	`jnl`	Frequency-dependent attenuation reconstruction with an acoustic reflector. Medical Image Anal. Richard Rau, Ozan Unal, Dieter Schweizer, Valery Vishnevsky, Orcun Goksel
2021	J	`jnl`	Hemodynamic response to sensory stimulation in mice: Comparison between functional ultrasound and optoacoustic imaging. NeuroImage Justine Robin, Richard Rau, Berkan Lafci, Aileen Schroeter, Michael Reiss, Xosé-Luís Dean-Ben, Orcun Goksel, Daniel Razansky
2021	J	`jnl`	Hierarchical Cell-to-Tissue Graph Representations for Breast Cancer Subtyping in Digital Pathology. CoRR Pushpak Pati, Guillaume Jaume, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosuè Scognamiglio, Nadia Brancati, Maryse Fiche, Estelle Dubruc, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Jean-Philippe Thiran, Maria Frucci, Orcun Goksel, Maria Gabrani
2021	J	`jnl`	IJCARS - IPCAI 2021 Special Issue: Information Processing for Computer-Assisted Interventions, 12th International Conference 2021 - Part 1. Int. J. Comput. Assist. Radiol. Surg. Alfred M. Franz, Orcun Goksel
2021	J	`jnl`	Learning Ultrasound Rendering from Cross-Sectional Model Slices for Simulated Training. CoRR Lin Zhang, Tiziano Portenier, Orcun Goksel
2021	—	`conf`	Learning Whole-Slide Segmentation from Inexact and Incomplete Labels Using Tissue Graphs. MICCAI (2) Valentin Anklin, Pushpak Pati, Guillaume Jaume, Behzad Bozorgtabar, Antonio Foncubierta-Rodríguez, Jean-Philippe Thiran, Mathilde Sibony, Maria Gabrani, Orcun Goksel
2021	J	`jnl`	Learning Whole-Slide Segmentation from Inexact and Incomplete Labels using Tissue Graphs. CoRR Valentin Anklin, Pushpak Pati, Guillaume Jaume, Behzad Bozorgtabar, Antonio Foncubierta-Rodríguez, Jean-Philippe Thiran, Mathilde Sibony, Maria Gabrani, Orcun Goksel
2021	J	`jnl`	Learning ultrasound rendering from cross-sectional model slices for simulated training. Int. J. Comput. Assist. Radiol. Surg. Lin Zhang, Tiziano Portenier, Orcun Goksel
2021	J	`jnl`	Match What Matters: Generative Implicit Feature Replay for Continual Learning. CoRR Kevin Thandiackal, Tiziano Portenier, Andrea Giovannini, Maria Gabrani, Orcun Goksel
2021	J	`jnl`	Modality attention and sampling enables deep learning with heterogeneous marker combinations in fluorescence microscopy. Nat. Mach. Intell. Alvaro Gomariz, Tiziano Portenier, Patrick M. Helbling, Stephan Isringhausen, Ute Suessbier, César Nombela-Arrieta, Orcun Goksel
2021	J	`jnl`	Probabilistic Spatial Analysis in Quantitative Microscopy with Uncertainty-Aware Cell Detection using Deep Bayesian Regression of Density Maps. CoRR Alvaro Gomariz, Tiziano Portenier, César Nombela-Arrieta, Orcun Goksel
2021	A*	`conf`	Quantifying Explainers of Graph Neural Networks in Computational Pathology. CVPR Guillaume Jaume, Pushpak Pati, Behzad Bozorgtabar, Antonio Foncubierta, Anna Maria Anniciello, Florinda Feroce, Tilman Rau, Jean-Philippe Thiran, Maria Gabrani, Orcun Goksel
2021	J	`jnl`	Reducing annotation effort in digital pathology: A Co-Representation learning framework for classification tasks. Medical Image Anal. Pushpak Pati, Antonio Foncubierta-Rodríguez, Orcun Goksel, Maria Gabrani
2021	J	`jnl`	Speed-of-sound imaging using diverging waves. Int. J. Comput. Assist. Radiol. Surg. Richard Rau, Dieter Schweizer, Valery Vishnevskiy, Orcun Goksel
2021	—	`conf`	Time Of Arrival Delineation In Echo Traces For Reflection Ultrasound Tomography. ISBI Bhaskara Rao Chintada, Richard Rau, Orcun Goksel
2021	—	`conf`	Utilizing Uncertainty Estimation in Deep Learning Segmentation of Fluorescence Microscopy Images with Missing Markers. ISBI Alvaro Gomariz, Raphael Egli, Tiziano Portenier, César Nombela-Arrieta, Orcun Goksel
2021	J	`jnl`	Utilizing Uncertainty Estimation in Deep Learning Segmentation of Fluorescence Microscopy Images with Missing Markers. CoRR Alvaro Gomariz, Raphael Egli, Tiziano Portenier, César Nombela-Arrieta, Orcun Goksel
2020	—	`ed.`	Biomedical Image Registration - 9th International Workshop, WBIR 2020, Portorož, Slovenia, December 1-2, 2020, Proceedings WBIR Ziga Spiclin, Jamie McClelland, Jan Kybic, Orcun Goksel
2020	J	`jnl`	Computational Analysis of Subscapularis Tears and Pectoralis Major Transfers on Muscular Activity. CoRR Fabien Péan, Philippe Favre, Orcun Goksel
2020	—	`conf`	Deep Image Translation for Enhancing Simulated Ultrasound Images. ASMUS/PIPPI@MICCAI Lin Zhang, Tiziano Portenier, Christoph Paulus, Orcun Goksel
2020	J	`jnl`	Deep Image Translation for Enhancing Simulated Ultrasound Images. CoRR Lin Zhang, Tiziano Portenier, Christoph Paulus, Orcun Goksel
2020	J	`jnl`	Deep Network for Scatterer Distribution Estimation for Ultrasound Image Simulation. CoRR Lin Zhang, Valeriy Vishnevskiy, Orcun Goksel
2020	J	`jnl`	Delineating Bone Surfaces in B-Mode Images Constrained by Physics of Ultrasound Propagation. CoRR Firat Özdemir, Christine Tanner, Orcun Goksel
2020	A*	`conf`	GramGAN: Deep 3D Texture Synthesis From 2D Exemplars. NeurIPS Tiziano Portenier, Siavash Arjomand Bigdeli, Orcun Goksel
2020	J	`jnl`	GramGAN: Deep 3D Texture Synthesis From 2D Exemplars. CoRR Tiziano Portenier, Siavash Arjomand Bigdeli, Orcun Goksel
2020	—	`conf`	HACT-Net: A Hierarchical Cell-to-Tissue Graph Neural Network for Histopathological Image Classification. UNSURE/GRAIL@MICCAI Pushpak Pati, Guillaume Jaume, Lauren Alisha Fernandes, Antonio Foncubierta-Rodríguez, Florinda Feroce, Anna Maria Anniciello, Giosue Scognamiglio, Nadia Brancati, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Orcun Goksel, Jean-Philippe Thiran, Maria Frucci, Maria Gabrani
2020	J	`jnl`	HACT-Net: A Hierarchical Cell-to-Tissue Graph Neural Network for Histopathological Image Classification. CoRR Pushpak Pati, Guillaume Jaume, Lauren Alisha Fernandes, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosue Scognamiglio, Nadia Brancati, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Orcun Goksel, Jean-Philippe Thiran, Maria Frucci, Maria Gabrani
2020	J	`jnl`	Quantifying Explainers of Graph Neural Networks in Computational Pathology. CoRR Guillaume Jaume, Pushpak Pati, Behzad Bozorgtabar, Antonio Foncubierta-Rodríguez, Florinda Feroce, Anna Maria Anniciello, Tilman Rau, Jean-Philippe Thiran, Maria Gabrani, Orcun Goksel
2020	—	`conf`	Reinforcement Learning of Musculoskeletal Control from Functional Simulations. MICCAI (3) Emanuel Joos, Fabien Péan, Orcun Goksel
2020	—	`ed.`	Shape in Medical Imaging - International Workshop, ShapeMI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4, 2020, Proceedings ShapeMI@MICCAI Martin Reuter, Christian Wachinger, Hervé Lombaert, Beatriz Paniagua, Orcun Goksel, Islem Rekik
2020	J	`jnl`	Towards Explainable Graph Representations in Digital Pathology. CoRR Guillaume Jaume, Pushpak Pati, Antonio Foncubierta-Rodríguez, Florinda Feroce, Giosue Scognamiglio, Anna Maria Anniciello, Jean-Philippe Thiran, Orcun Goksel, Maria Gabrani
2020	J	`jnl`	Training Variational Networks with Multi-Domain Simulations: Speed-of-Sound Image Reconstruction. CoRR Melanie Bernhardt, Valeriy Vishnevskiy, Richard Rau, Orcun Goksel
2019	—	`conf`	A deep learning framework for context-aware mitotic activity estimation in whole slide images. Digital Pathology Pushpak Pati, Raúl Catena, Orcun Goksel, Maria Gabrani
2019	J	`jnl`	Acoustic Field Characterization of Medical Array Transducers Based on Unfocused Transmits and Single-Plane Hydrophone Measurements. Sensors Torben Marhenke, Sergio J. Sanabria, Bhaskara Rao Chintada, Roman Furrer, Jürg Neuenschwander, Orcun Goksel
2019	J	`jnl`	Active Learning for Segmentation Based on Bayesian Sample Queries. CoRR Firat Özdemir, Zixuan Peng, Philipp Fürnstahl, Christine Tanner, Orcun Goksel
2019	—	`conf`	Attenuation Imaging with Pulse-Echo Ultrasound Based on an Acoustic Reflector. MICCAI (5) Richard Rau, Ozan Unal, Dieter Schweizer, Valeriy Vishnevskiy, Orcun Goksel
2019	—	`conf`	Deep Variational Networks with Exponential Weighting for Learning Computed Tomography. MICCAI (6) Valeriy Vishnevskiy, Richard Rau, Orcun Goksel
2019	J	`jnl`	Deep Variational Networks with Exponential Weighting for Learning Computed Tomography. CoRR Valeriy Vishnevskiy, Richard Rau, Orcun Goksel
2019	J	`jnl`	Extending pretrained segmentation networks with additional anatomical structures. Int. J. Comput. Assist. Radiol. Surg. Firat Özdemir, Orcun Goksel
2019	J	`jnl`	High-Quality Immunohistochemical Stains Through Computational Assay Parameter Optimization. IEEE Trans. Biomed. Eng. Nuri Murat Arar, Pushpak Pati, Aditya Kashyap, Anna Fomitcheva Khartchenko, Orcun Goksel, Govind V. Kaigala, Maria Gabrani
2019	—	`conf`	Implicit Modeling With Uncertainty Estimation For Intravoxel Incoherent Motion Imaging. ISBI Lin Zhang, Valeriy Vishnevskiy, András Jakab, Orcun Goksel
2019	J	`jnl`	SCATGAN for Reconstruction of Ultrasound Scatterers Using Generative Adversarial Networks. CoRR Andrawes Al Bahou, Christine Tanner, Orcun Goksel
2019	—	`conf`	Scatgan for Reconstruction of Ultrasound Scatterers Using Generative Adversarial Networks. ISBI Andrawes Al Bahou, Christine Tanner, Orcun Goksel
2019	—	`conf`	Siamese Networks With Location Prior for Landmark Tracking in Liver Ultrasound Sequences. ISBI Alvaro Gomariz, Weiye Li, Ece Ozkan, Christine Tanner, Orcun Goksel
2019	J	`jnl`	Speed-of-Sound Imaging Based on Reflector Delineation. IEEE Trans. Biomed. Eng. Sergio J. Sanabria, Marga B. Rominger, Orcun Goksel
2019	J	`jnl`	Ultrasound simulation with animated anatomical models and on-the-fly fusion with real images via path-tracing. Comput. Graph. Rastislav Starkov, Christine Tanner, Michael Bajka, Orcun Goksel
2019	J	`jnl`	Ultrasound simulation with deformable and patient-specific scatterer maps. Int. J. Comput. Assist. Radiol. Surg. Rastislav Starkov, Lin Zhang, Michael Bajka, Christine Tanner, Orcun Goksel
2019	J	`jnl`	Weighted Mean Curvature. CoRR Yuanhao Gong, Orcun Goksel
2019	J	`jnl`	Weighted mean curvature. Signal Process. Yuanhao Gong, Orcun Goksel
2018	—	`conf`	A Structure-Aware Convolutional Neural Network for Skin Lesion Classification. OR 2.0/CARE/CLIP/ISIC@MICCAI Kevin Thandiackal, Orcun Goksel
2018	J	`jnl`	Active Learning for Segmentation by Optimizing Content Information for Maximal Entropy. CoRR Firat Özdemir, Zixuan Peng, Christine Tanner, Philipp Fürnstahl, Orcun Goksel
2018	J	`jnl`	FEM-based elasticity reconstruction using ultrasound for imaging tissue ablation. Int. J. Comput. Assist. Radiol. Surg. Corin F. Otesteanu, Valery Vishnevsky, Orcun Goksel
2018	—	`conf`	Framework for Fusion of Data- and Model-Based Approaches for Ultrasound Simulation. MICCAI (4) Christine Tanner, Rastislav Starkov, Michael Bajka, Orcun Goksel
2018	—	`conf`	Image Reconstruction via Variational Network for Real-Time Hand-Held Sound-Speed Imaging. MLMIR@MICCAI Valeriy Vishnevskiy, Sergio J. Sanabria, Orcun Goksel
2018	J	`jnl`	Image Reconstruction via Variational Network for Real-Time Hand-Held Sound-Speed Imaging. CoRR Valeriy Vishnevskiy, Sergio J. Sanabria, Orcun Goksel
2018	J	`jnl`	Image-Based Reconstruction of Tissue Scatterers Using Beam Steering for Ultrasound Simulation. IEEE Trans. Medical Imaging Oliver Mattausch, Orcun Goksel
2018	J	`jnl`	Implicit Modeling with Uncertainty Estimation for Intravoxel Incoherent Motion Imaging. CoRR Lin Zhang, Valeriy Vishnevskiy, András Jakab, Orcun Goksel
2018	J	`jnl`	Real-Time FEM-Based Registration of 3-D to 2.5-D Transrectal Ultrasound Images. IEEE Trans. Medical Imaging Golnoosh Samei, Orcun Goksel, Julio Lobo, Omid Mohareri, Peter C. Black, Robert Rohling, Septimiu E. Salcudean
2018	J	`jnl`	Realistic Ultrasound Simulation of Complex Surface Models Using Interactive Monte-Carlo Path Tracing. Comput. Graph. Forum Oliver Mattausch, Maxim Makhinya, Orcun Goksel
2018	J	`jnl`	Registration of 3D freehand ultrasound to a bone model for orthopedic procedures of the forearm. Int. J. Comput. Assist. Radiol. Surg. Matija Ciganovic, Firat Özdemir, Fabien Péan, Philipp Fürnstahl, Christine Tanner, Orcun Goksel
2018	J	`jnl`	Robust Reconstruction of Elasticity Using Ultrasound Imaging and Multi-Frequency Excitations. IEEE Trans. Medical Imaging Corin F. Otesteanu, Sergio J. Sanabria, Orcun Goksel
2018	—	`ed.`	Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Proceedings SASHIMI@MICCAI Ali Gooya, Orcun Goksel, Ipek Oguz, Ninon Burgos
2017	—	`conf`	Comparison of texture synthesis methods for content generation in ultrasound simulation for training. Image-Guided Procedures Oliver Mattausch, Elizabeth Ren, Michael Bajka, Kenneth Vanhoey, Orcun Goksel
2017	—	`conf`	Computational Immunohistochemistry: Recipes for Standardization of Immunostaining. MICCAI (2) Nuri Murat Arar, Pushpak Pati, Aditya Kashyap, Anna Fomitcheva Khartchenko, Orcun Goksel, Govind V. Kaigala, Maria Gabrani
2017	J	`jnl`	Consistent reconstruction of 4D fetal heart ultrasound images to cope with fetal motion. Int. J. Comput. Assist. Radiol. Surg. Christine Tanner, Barbara Flach, Céline Eggenberger, Oliver Mattausch, Michael Bajka, Orcun Goksel
2017	J	`jnl`	Interactive segmentation in MRI for orthopedic surgery planning: bone tissue. Int. J. Comput. Assist. Radiol. Surg. Firat Özdemir, Neerav Karani, Philipp Fürnstahl, Orcun Goksel
2017	J	`jnl`	Robust motion tracking in liver from 2D ultrasound images using supporters. Int. J. Comput. Assist. Radiol. Surg. Ece Ozkan, Christine Tanner, Matej Kastelic, Oliver Mattausch, Maxim Makhinya, Orcun Goksel
2017	—	`ch.`	VISCERAL Anatomy Benchmarks for Organ Segmentation and Landmark Localization: Tasks and Results. Cloud-Based Benchmarking of Medical Image Analysis Orcun Goksel, Antonio Foncubierta-Rodríguez
2016	—	`conf`	4D Reconstruction of Fetal Heart Ultrasound Images in Presence of Fetal Motion. MICCAI (1) Christine Tanner, Barbara Flach, Céline Eggenberger, Oliver Mattausch, Michael Bajka, Orcun Goksel
2016	—	`conf`	Analysis of excitation frequency in elasticity reconstruction using the FEM inverse-problem. ISBI Corin F. Otesteanu, Sergio J. Sanabria, Orcun Goksel
2016	J	`jnl`	Automatic Measurement of Venous Pressure Using B-Mode Ultrasound. IEEE Trans. Biomed. Eng. Alessandro Crimi, Maxim Makhinya, Ulrich Baumann, Christoph Thalhammer, Gábor Székely, Orcun Goksel
2016	—	`conf`	Automatic Segmentation of Abdominal MRI Using Selective Sampling and Random Walker. MCV/BAMBI@MICCAI Janine Thoma, Firat Özdemir, Orcun Goksel
2016	J	`jnl`	Cloud-Based Evaluation of Anatomical Structure Segmentation and Landmark Detection Algorithms: VISCERAL Anatomy Benchmarks. IEEE Trans. Medical Imaging Oscar Alfonso Jiménez del Toro, Henning Müller, Markus Krenn, Katharina Gruenberg, Abdel Aziz Taha, Marianne Winterstein, Ivan Eggel, Antonio Foncubierta-Rodríguez, Orcun Goksel, András Jakab, Georgios Kontokotsios, Georg Langs, Bjoern H. Menze, Tomas Salas Fernandez, Roger Schaer, Anna Walleyo, Marc-André Weber, Yashin Dicente Cid, Tobias Gass, Mattias P. Heinrich, Fucang Jia, Fredrik Kahl, Razmig Kéchichian, Dominic Mai, Assaf B. Spanier, Graham Vincent, Chunliang Wang, Daniel Wyeth, Allan Hanbury
2016	—	`conf`	Graphical Modeling of Ultrasound Propagation in Tissue for Automatic Bone Segmentation. MICCAI (2) Firat Özdemir, Ece Ozkan, Orcun Goksel
2016	—	`conf`	Hand-Held Sound-Speed Imaging Based on Ultrasound Reflector Delineation. MICCAI (1) Sergio J. Sanabria, Orcun Goksel
2016	J	`jnl`	Herding Generalizes Diverse M -Best Solutions. CoRR Ece Ozkan, Gemma Roig, Orcun Goksel, Xavier Boix
2016	—	`conf`	Image-Based PSF Estimation for Ultrasound Training Simulation. SASHIMI@MICCAI Oliver Mattausch, Orcun Goksel
2016	—	`conf`	Imaging of sliding visceral interfaces during breathing. ISBI Orcun Goksel, Valery Vishnevsky, Alvaro Gomariz Carrillo, Christine Tanner
2016	—	`conf`	Model-based compensation of tissue deformation during data acquisition for interpolative ultrasound simulation. ISBI Barbara Flach, Maxim Makhinya, Orcun Goksel
2016	—	`conf`	Monte-Carlo Ray-Tracing for Realistic Interactive Ultrasound Simulation. VCBM/MedViz Oliver Mattausch, Orcun Goksel
2016	—	`conf`	PURE: Panoramic Ultrasound Reconstruction by Seamless Stitching of Volumes. SASHIMI@MICCAI Barbara Flach, Maxim Makhinya, Orcun Goksel
2015	J	`jnl`	Biomechanically Constrained Surface Registration: Application to MR-TRUS Fusion for Prostate Interventions. IEEE Trans. Medical Imaging Siavash Khallaghi, C. Antonio Sánchez, Abtin Rasoulian, Yue Sun, Farhad Imani, Amir Khojaste, Orcun Goksel, Cesare Romagnoli, Hamidreza Abdi, Silvia D. Chang, Parvin Mousavi, Aaron Fenster, Aaron D. Ward, Sidney S. Fels, Purang Abolmaesumi
2015	—	`conf`	Compliance boundary conditions for simulating deformations in a limited target region. EMBC Ece Ozkan, Orcun Goksel
2015	—	`conf`	Overview of the VISCERAL Challenge at ISBI 2015. VISCERAL Challenge@ISBI Orcun Goksel, Antonio Foncubierta-Rodríguez, Oscar Alfonso Jiménez del Toro, Henning Müller, Georg Langs, Marc-André Weber, Bjoern H. Menze, Ivan Eggel, Katharina Gruenberg, Marianne Winterstein, Markus Holzer, Markus Krenn, Georgios Kontokotsios, Sokratis Metallidis, Roger Schaer, Abdel Aziz Taha, András Jakab, Tomas Salas Fernandez, Allan Hanbury
2015	—	`ed.`	Proceedings of the VISCERAL Anatomy3 Organ Segmentation Challenge co-located with IEEE International Symposium on Biomedical Imaging (ISBI 2015), Brooklyn, NY, USA, April 16, 2015. VISCERAL Challenge@ISBI Orcun Goksel, Oscar Alfonso Jiménez del Toro, Antonio Foncubierta-Rodríguez, Henning Müller
2015	—	`conf`	Scatterer reconstruction and parametrization of homogeneous tissue for ultrasound image simulation. EMBC Oliver Mattausch, Orcun Goksel
2015	J	`jnl`	Thermal expansion imaging for monitoring lesion depth using M-mode ultrasound during cardiac RF ablation: in vitro study. Int. J. Comput. Assist. Radiol. Surg. Peter Baki, Sergio J. Sanabria, Gabor Kosa, Gábor Székely, Orcun Goksel
2015	—	`conf`	Unsupervised detection of local errors in image registration. ISBI Valeriy Vishnevskiy, Tobias Gass, Gábor Székely, Christine Tanner, Orcun Goksel
2014	B	`conf`	Auxiliary anatomical labels for joint segmentation and atlas registration. Image Processing Tobias Gass, Gábor Székely, Orcun Goksel
2014	B	`conf`	Detection and correction of inconsistency-based errors in non-rigid registration. Image Processing Tobias Gass, Gábor Székely, Orcun Goksel
2014	—	`conf`	Multi-atlas Segmentation and Landmark Localization in Images with Large Field of View. MCV Tobias Gass, Gábor Székely, Orcun Goksel
2014	—	`conf`	Registration Fusion Using Markov Random Fields. WBIR Tobias Gass, Gábor Székely, Orcun Goksel
2014	J	`jnl`	Simultaneous Segmentation and Multiresolution Nonrigid Atlas Registration. IEEE Trans. Image Process. Tobias Gass, Gábor Székely, Orcun Goksel
2014	—	`conf`	Total Variation Regularization of Displacements in Parametric Image Registration. ABDI@MICCAI Valeriy Vishnevskiy, Tobias Gass, Gábor Székely, Orcun Goksel
2014	—	`conf`	Vessel tracking for ultrasound-based venous pressure measurement. ISBI Alessandro Crimi, Maxim Makhinya, Ulrich Baumann, Gábor Székely, Orcun Goksel
2013	—	`conf`	Accuracy improvement in Cranio-Maxillofacial soft tissue simulation using a muscle embedded meshing approach. EMBC Kamal Shahim, Orcun Goksel, Philipp Jürgens, Mauricio Reyes
2013	—	`conf`	Deformable haptic model generation through manual exploration. World Haptics Orcun Goksel, Seokhee Jeon, Matthias Harders, Gábor Székely
2013	—	`conf`	Estimation of atlas-based segmentation outcome: Leveraging information from unsegmented images. ISBI Orcun Goksel, Tobias Gass, Valery Vishnevsky, Gábor Székely
2013	J	`jnl`	Mesh Adaptation for Improving Elasticity Reconstruction Using the FEM Inverse Problem. IEEE Trans. Medical Imaging Orcun Goksel, Hani Eskandari, Septimiu E. Salcudean
2013	J	`jnl`	Prostate Brachytherapy Training With Simulated Ultrasound and Fluoroscopy Images. IEEE Trans. Biomed. Eng. Orcun Goksel, Kirill Sapchuk, William J. Morris, Septimiu E. Salcudean
2012	—	`conf`	Deformable prostate registration from MR and TRUS images using surface error driven FEM models. Image-Guided Procedures Farheen Taquee, Orcun Goksel, Seyedeh Sara Mahdavi, Mira Keyes, William James Morris, Ingrid Spadinger, Septimiu E. Salcudean
2012	—	`conf`	Semi-supervised Segmentation Using Multiple Segmentation Hypotheses from a Single Atlas. MCV Tobias Gass, Gábor Székely, Orcun Goksel
2011	J	`jnl`	Haptic Simulator for Prostate Brachytherapy with Simulated Needle and Probe Interaction. IEEE Trans. Haptics Orcun Goksel, Kirill Sapchuk, Septimiu E. Salcudean
2011	—	`conf`	Haptic simulation of needle and probe interaction with tissue for prostate brachytherapy training. World Haptics Orcun Goksel, Kirill Sapchuk, Septimiu E. Salcudean
2011	J	`jnl`	Image-Based Variational Meshing. IEEE Trans. Medical Imaging Orcun Goksel, Septimiu E. Salcudean
2010	—	`conf`	Haptic Simulator for Prostate Brachytherapy with Simulated Ultrasound. ISMBS Orcun Goksel, Septimiu E. Salcudean
2009	—	`conf`	3D Prostate Segmentation in Ultrasound Images Based on Tapered and Deformed Ellipsoids. MICCAI (1) Seyedeh Sara Mahdavi, William J. Morris, Ingrid Spadinger, Nick Chng, Orcun Goksel, Septimiu E. Salcudean
2009	J	`jnl`	B-Mode Ultrasound Image Simulation in Deformable 3-D Medium. IEEE Trans. Medical Imaging Orcun Goksel, Septimiu E. Salcudean
2009	—	`conf`	High-Quality Model Generation for Finite Element Simulation of Tissue Deformation. MICCAI (1) Orcun Goksel, Septimiu E. Salcudean
2007	—	`conf`	Real-Time Synthesis of Image Slices in Deformed Tissue from Nominal Volume Images. MICCAI (1) Orcun Goksel, Septimiu E. Salcudean
2006	—	`conf`	A Comparison of Needle Bending Models. MICCAI (1) Ehsan Dehghan, Orcun Goksel, Septimiu E. Salcudean
2005	A	`conf`	3D Needle-Tissue Interaction Simulation for Prostate Brachytherapy. MICCAI Orcun Goksel, Septimiu E. Salcudean, Simon P. DiMaio, Robert Rohling, William James Morris