Ora Schueler-Furman

14 papers B 1Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
CoRR
Gal Kesten-Pomeranz, Yaniv Nikankin, Anja Reusch, Tomer Tsaban, Ora Schueler-Furman, Yonatan Belinkov
2025 J jnl
Bioinform.
Julia K. Varga, Sergey Ovchinnikov, Ora Schueler-Furman
2023 J jnl
BMC Bioinform.
Orly Avraham, Tomer Tsaban, Ziv Ben-Aharon, Linoy Tsaban, Ora Schueler-Furman
2020 J jnl
PLoS Comput. Biol.
Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William R. Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland L. Dunbrack Jr., Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau
2017 J jnl
Bioinform.
Kathryn A. Porter, Bing Xia, Dmitri Beglov, Tanggis Bohnuud, Nawsad Alam, Ora Schueler-Furman, Dima Kozakov
2017 J jnl
PLoS Comput. Biol.
Nawsad Alam, Oriel Goldstein, Bing Xia, Kathryn A. Porter, Dima Kozakov, Ora Schueler-Furman
2016 J jnl
Nucleic Acids Res.
Yuval Sedan, Orly Marcu, Sergey Lyskov, Ora Schueler-Furman
2012 J jnl
Bioinform.
Ryan Brenke, David R. Hall, Gwo-Yu Chuang, Stephen R. Comeau, Tanggis Bohnuud, Dmitri Beglov, Ora Schueler-Furman, Sandor Vajda, Dima Kozakov
2011 J jnl
PLoS Comput. Biol.
Nir London, Corissa L. Lamphear, James L. Hougland, Carol A. Fierke, Ora Schueler-Furman
2011 J jnl
Nucleic Acids Res.
Nir London, Barak Raveh, Eyal Cohen, Guy Fathi, Ora Schueler-Furman
2009 J jnl
PLoS Comput. Biol.
Barak Raveh, Angela Enosh, Ora Schueler-Furman, Dan Halperin
2008 J jnl
J. Comput. Biol.
Chen Yanover, Ora Schueler-Furman, Yair Weiss
2007 B conf
RECOMB
Chen Yanover, Ora Schueler-Furman, Yair Weiss
2006 conf
ISMB (Supplement of Bioinformatics)
Nebojsa Jojic, Manuel Reyes-Gomez, David Heckerman, Carl Myers Kadie, Ora Schueler-Furman
redb/extractors/decompiler/apk/library_filter.py
← Index redb/extractors/decompiler/apk/library_filter.py python
"""Package-based library filtering for APK DEX code analysis.

Determines whether a method belongs to a known library/framework package
and should be filtered out of content tables. This is the Android equivalent
of is_lib_or_thunk() in the Binary Ninja pipeline.
"""

import os
from typing import Dict, List


DEFAULT_LIBRARY_PREFIXES = [
    "android.",
    "androidx.",
    "com.google.android.",
    "com.google.firebase.",
    "com.google.gson.",
    "com.google.protobuf.",
    "kotlin.",
    "kotlinx.",
    "org.apache.",
    "com.squareup.",
    "io.reactivex.",
    "org.reactivestreams.",
    "com.facebook.",
    "com.crashlytics.",
    "io.fabric.",
    "org.junit.",
    "org.mockito.",
]


class LibraryFilter:
    """Filters library/framework classes from APK analysis."""

    def __init__(self, prefixes: List[str] = None):
        env_prefixes = os.getenv("APK_LIBRARY_PREFIXES")
        if env_prefixes:
            self._prefixes = [p.strip() for p in env_prefixes.split(",") if p.strip()]
        elif prefixes is not None:
            self._prefixes = prefixes
        else:
            self._prefixes = DEFAULT_LIBRARY_PREFIXES

        # Convert Dalvik-style prefixes to both formats for matching
        self._dot_prefixes = tuple(self._prefixes)

        self._stats = {"library": 0, "user": 0}

    def is_library(self, class_name: str) -> bool:
        """Check if a class belongs to a known library/framework package.

        Accepts both Java dot notation (com.example.Foo) and Dalvik
        descriptor notation (Lcom/example/Foo;).
        """
        # Normalize Dalvik descriptor to dot notation
        normalized = self._normalize_class_name(class_name)

        is_lib = normalized.startswith(self._dot_prefixes)
        if is_lib:
            self._stats["library"] += 1
        else:
            self._stats["user"] += 1
        return is_lib

    def get_filter_stats(self) -> Dict[str, int]:
        """Return counts of filtered vs. retained classes."""
        return dict(self._stats)

    @staticmethod
    def _normalize_class_name(class_name: str) -> str:
        """Convert Dalvik descriptor to dot notation.

        Lcom/example/Foo; -> com.example.Foo
        com.example.Foo -> com.example.Foo
        """
        if class_name.startswith("L") and class_name.endswith(";"):
            return class_name[1:-1].replace("/", ".")
        return class_name.replace("/", ".")