Ondrej Strnad

25 papers B 1Misc 1Journal 21Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
DiffFit: Visually-Guided Differentiable Fitting of Molecule Structures to a Cryo-EM Map.
IEEE Trans. Vis. Comput. Graph.
Deng Luo, Zainab Alsuwaykit, Dawar Khan, Ondrej Strnad, Tobias Isenberg, Ivan Viola
2025 J jnl
Errata to "DiffFit: Visually-Guided Differentiable Fitting of Molecule Structures to a Cryo-EM Map".
IEEE Trans. Vis. Comput. Graph.
Deng Luo, Zainab Alsuwaykit, Dawar Khan, Ondrej Strnad, Tobias Isenberg, Ivan Viola
2025 J jnl
Nanomatrix: Scalable Construction of Crowded Biological Environments.
IEEE Trans. Vis. Comput. Graph.
Ruwayda Alharbi, Ondrej Strnad, Tobias Klein, Ivan Viola
2025 J jnl
Nanouniverse: Virtual Instancing of Structural Detail and Adaptive Shell Mapping.
IEEE Trans. Vis. Comput. Graph.
Ruwayda Alharbi, Ondrej Strnad, Markus Hadwiger, Ivan Viola
2025 J jnl
SynopFrame: Multiscale time-dependent visual abstraction framework for analyzing DNA nanotechnology simulations.
Comput. Graph.
Deng Luo, Alexandre Kouyoumdjian, Ondrej Strnad, Haichao Miao, Ivan Barisic, Tobias Isenberg, Ivan Viola
2025 J jnl
VOICE: Visual Oracle for Interaction, Conversation, and Explanation.
IEEE Trans. Vis. Comput. Graph.
Donggang Jia, Alexandra Irger, Lonni Besançon, Ondrej Strnad, Deng Luo, Johanna Björklund, Alexandre Kouyoumdjian, Anders Ynnerman, Ivan Viola
2024 J jnl
GPU Accelerated 3D Tomographic Reconstruction and Visualization From Noisy Electron Microscopy Tilt-Series.
IEEE Trans. Vis. Comput. Graph.
Julio Rey Ramirez, Peter Rautek, Ciril Bohak, Ondrej Strnad, Zheyuan Zhang, Sai Li, Ivan Viola, Wolfgang Heidrich
2024 J jnl
Nanouniverse: Virtual Instancing of Structural Detail and Adaptive Shell Mapping.
CoRR
Ruwayda Alharbi, Ondrej Strnad, Markus Hadwiger, Ivan Viola
2024 B conf
Towards Differentiable Electron Microscopy Simulation: Methods and Applications.
PacificVis
Ngan V. T. Nguyen, Feng Liang, Dominik Engel, Ciril Bohak, Ondrej Strnad, Timo Ropinski, Ivan Viola
2024 J jnl
Volume conductor: interactive visibility management for crowded volumes.
Vis. Comput.
Ziga Lesar, Ruwayda Alharbi, Ciril Bohak, Ondrej Strnad, Christoph Heinzl, Matija Marolt, Ivan Viola
2023 J jnl
Finding Nano-Ötzi: Cryo-Electron Tomography Visualization Guided by Learned Segmentation.
IEEE Trans. Vis. Comput. Graph.
Ngan V. T. Nguyen, Ciril Bohak, Dominik Engel, Peter Mindek, Ondrej Strnad, Peter Wonka, Sai Li, Timo Ropinski, Ivan Viola
2023 J jnl
Molecumentary: Adaptable Narrated Documentaries Using Molecular Visualization.
IEEE Trans. Vis. Comput. Graph.
David Kouril, Ondrej Strnad, Peter Mindek, Sarkis Halladjian, Tobias Isenberg, M. Eduard Gröller, Ivan Viola
2023 J jnl
Nanotilus: Generator of Immersive Guided-Tours in Crowded 3D Environments.
IEEE Trans. Vis. Comput. Graph.
Ruwayda Alharbi, Ondrej Strnad, Laura Rosalia Luidolt, Manuela Waldner, David Kouril, Ciril Bohak, Tobias Klein, Eduard Gröller, Ivan Viola
2023 J jnl
VOICE: Visual Oracle for Interaction, Conversation, and Explanation.
CoRR
Donggang Jia, Alexandra Irger, Ondrej Strnad, Johanna Björklund, Anders Ynnerman, Ivan Viola
2022 J jnl
Nanomatrix: Scalable Construction of Crowded Biological Environments.
CoRR
Ruwayda Alharbi, Ondrej Strnad, Tobias Klein, Ivan Viola
2022 J jnl
SynopSet: Multiscale Visual Abstraction Set for Explanatory Analysis of DNA Nanotechnology Simulations.
CoRR
Deng Luo, Alexandre Kouyoumdjian, Ondrej Strnad, Haichao Miao, Ivan Barisic, Ivan Viola
2022 J jnl
Volume Conductor: Interactive Visibility Management for Crowded Volumes.
CoRR
Ziga Lesar, Ruwayda Alharbi, Ciril Bohak, Ondrej Strnad, Christoph Heinzl, Matija Marolt, Ivan Viola
2021 — conf
@What does a virus actually look like?
SIGGRAPH Computer Animation Festival
Peter Mindek, Ivan Viola, Ondrej Strnad, Ciril Bohak, Sai Li, Tobias Klein
2021 J jnl
Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models.
IEEE Trans. Vis. Comput. Graph.
Ngan V. T. Nguyen, Ondrej Strnad, Tobias Klein, Deng Luo, Ruwayda Alharbi, Peter Wonka, Martina Maritan, Peter Mindek, Ludovic Autin, David S. Goodsell, Ivan Viola
2020 J jnl
Molecumentary: Scalable Narrated Documentaries Using Molecular Visualization.
CoRR
David Kouril, Ondrej Strnad, Peter Mindek, Sarkis Halladjian, Tobias Isenberg, M. Eduard Gröller, Ivan Viola
2018 J jnl
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories.
Bioinform.
Adam Jurcík, David Bednar, Jan Byska, Sérgio M. Marques, Katarína Furmanová, Lukas Daniel, Piia Kokkonen, Jan Brezovsky, Ondrej Strnad, Jan Stourac, Antonín Pavelka, Martin Manak, Jirí Damborský, Barbora Kozlíková
2014 J jnl
CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures.
Bioinform.
Barbora Kozlíková, Eva Sebestova, Vilém Sustr, Jan Brezovsky, Ondrej Strnad, Lukas Daniel, David Bednar, Antonín Pavelka, Martin Manak, Martin Bezdeka, Petr Benes, Matus Kotry, Artur Góra, Jirí Damborský, Jiri Sochor
2014 Misc conf
Detection of Intramolecular Tunnels Connecting Sequence of Sites in Protein Structures.
PACBB
Ondrej Strnad, Barbora Kozlíková, Jiri Sochor
2014 — conf
Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations.
VCBM
Barbora Kozlíková, Adam Jurcík, Jan Byska, Ondrej Strnad, Jiri Sochor
2012 J jnl
CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures.
PLoS Comput. Biol.
Eva Chovancová, Antonín Pavelka, Petr Benes, Ondrej Strnad, Jan Brezovsky, Barbora Kozlíková, Artur Góra, Vilém Sustr, Martin Klvana, Petr Medek, Lada Biedermannová, Jiri Sochor, Jirí Damborský