Omer S. Alkhnbashi

13 papers Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
A description language for enhancing transparency and interoperability in blockchain smart contracts.
Clust. Comput.
Omar M. Bawazeer, Md. Mahfuzur Rahman, Omer S. Alkhnbashi, Mohammad Hammoudeh
2025 J jnl
An evolutionary approach to predict the orientation of CRISPR arrays.
PLoS Comput. Biol.
Axel Fehrenbach, Alexander Mitrofanov, Omer S. Alkhnbashi, Rolf Backofen, Franz Baumdicker
2024 J jnl
Aspect-Based Sentiment Analysis of Patient Feedback Using Large Language Models.
Big Data Cogn. Comput.
Omer S. Alkhnbashi, Rasheed Mohammad, Mohammad Hammoudeh
2024 J jnl
Education in Transition: Adapting and Thriving in a Post-COVID World.
Syst.
Omer S. Alkhnbashi, Rasheed Mohammad, Doaa M. Bamasoud
2024 J jnl
Optimizing Large Language Models for Arabic Healthcare Communication: A Focus on Patient-Centered NLP Applications.
Big Data Cogn. Comput.
Rasheed Mohammad, Omer S. Alkhnbashi, Mohammad Hammoudeh
2022 J jnl
CRISPRtracrRNA: robust approach for CRISPR tracrRNA detection.
Bioinform.
Alexander Mitrofanov, Marcus Ziemann, Omer S. Alkhnbashi, Wolfgang R. Hess, Rolf Backofen
2022 J jnl
RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria.
Briefings Bioinform.
Rick Gelhausen, Teresa Müller, Sarah L. Svensson, Omer S. Alkhnbashi, Cynthia M. Sharma, Florian Eggenhofer, Rolf Backofen
2021 J jnl
<tt>CRISPRloci: </tt> comprehensive and accurate annotation of CRISPR-Cas systems.
Nucleic Acids Res.
Omer S. Alkhnbashi, Alexander Mitrofanov, Robson Bonidia, Martin Raden, Van Dinh Tran, Florian Eggenhofer, Shiraz A. Shah, Ekrem Öztürk, Victor Alexandre Padilha, Danilo Sipoli Sanches, André C. P. L. F. de Carvalho, Rolf Backofen
2021 J jnl
Casboundary: automated definition of integral Cas cassettes.
Bioinform.
Victor Alexandre Padilha, Omer S. Alkhnbashi, Van Dinh Tran, Shiraz A. Shah, André C. P. L. F. de Carvalho, Rolf Backofen
2018 J jnl
Freiburg RNA tools: a central online resource for RNA-focused research and teaching.
Nucleic Acids Res.
Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen
2017 — —
Computational characterisation of genomic CRISPR-Cas systems in archaea and bacteria
Omer S. Alkhnbashi
2016 J jnl
Characterizing leader sequences of CRISPR loci.
Bioinform.
Omer S. Alkhnbashi, Shiraz A. Shah, Roger A. Garrett, Sita J. Saunders, Fabrizio Costa, Rolf Backofen
2014 J jnl
CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci.
Bioinform.
Omer S. Alkhnbashi, Fabrizio Costa, Shiraz A. Shah, Roger A. Garrett, Sita J. Saunders, Rolf Backofen