Olli T. Pentikäinen

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2024 J jnl
Atomistic simulations reveal impacts of missense mutations on the structure and function of SynGAP1.
Briefings Bioinform.
Aliaa E. Ali, Li-li Li, Michael J. Courtney, Olli T. Pentikäinen, Pekka A. Postila
2024 J jnl
Building shape-focused pharmacophore models for effective docking screening.
J. Cheminformatics
Paola Moyano-Gómez, Jukka V. Lehtonen, Olli T. Pentikäinen, Pekka A. Postila
2022 J jnl
Optimization of Cavity-Based Negative Images to Boost Docking Enrichment in Virtual Screening.
J. Chem. Inf. Model.
Sami T. Kurkinen, Jukka V. Lehtonen, Olli T. Pentikäinen, Pekka A. Postila
2022 J jnl
Sdfconf: A Novel, Flexible, and Robust Molecular Data Management Tool.
J. Chem. Inf. Model.
Sakari Lätti, Sanna P. Niinivehmas, Olli T. Pentikäinen
2021 J jnl
Detection of Binding Sites on SARS-CoV-2 Spike Protein Receptor-Binding Domain by Molecular Dynamics Simulations in Mixed Solvents.
IEEE ACM Trans. Comput. Biol. Bioinform.
Elmeri M. Jokinen, Krishnasamy Gopinath, Sami T. Kurkinen, Olli T. Pentikäinen
2019 J jnl
Getting Docking into Shape Using Negative Image-Based Rescoring.
J. Chem. Inf. Model.
Sami T. Kurkinen, Sakari Lätti, Olli T. Pentikäinen, Pekka A. Postila
2016 J jnl
Rocker: Open source, easy-to-use tool for AUC and enrichment calculations and ROC visualization.
J. Cheminformatics
Sakari Lätti, Sanna P. Niinivehmas, Olli T. Pentikäinen
2015 J jnl
Ultrafast protein structure-based virtual screening with Panther.
J. Comput. Aided Mol. Des.
Sanna P. Niinivehmas, Kari Salokas, Sakari Lätti, Hannu Raunio, Olli T. Pentikäinen
2013 J jnl
MMGBSA As a Tool To Understand the Binding Affinities of Filamin-Peptide Interactions.
J. Chem. Inf. Model.
Mikko Ylilauri, Olli T. Pentikäinen
2011 J jnl
Comparison of Virtual High-Throughput Screening Methods for the Identification of Phosphodiesterase-5 Inhibitors.
J. Chem. Inf. Model.
Sanna P. Niinivehmas, Salla I. Virtanen, Jukka V. Lehtonen, Pekka A. Postila, Olli T. Pentikäinen
2011 J jnl
Full and Partial Agonism of Ionotropic Glutamate Receptors Indicated by Molecular Dynamics Simulations.
J. Chem. Inf. Model.
Pekka A. Postila, Mikko Ylilauri, Olli T. Pentikäinen
2010 J jnl
Efficient Virtual Screening Using Multiple Protein Conformations Described as Negative Images of the Ligand-Binding Site.
J. Chem. Inf. Model.
Salla I. Virtanen, Olli T. Pentikäinen
2004 J jnl
BODIL: a molecular modeling environment for structure-function analysis and drug design.
J. Comput. Aided Mol. Des.
Jukka V. Lehtonen, Dan-Johan Still, Ville-Veikko Rantanen, Jan Ekholm, Dag Björklund, Zuhair Iftikhar, Mikko Huhtala, Susanna Repo, Antti Jussila, Jussi Jaakkola, Olli T. Pentikäinen, Tommi H. Nyrönen, Tiina Salminen, Mats Gyllenberg, Mark S. Johnson