Olli-P. Kallioniemi

19 papers Journal 18Unranked 1

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data. Nucleic Acids Res. Potdar Swapnil, Filipp Ianevski, Aleksandr Ianevski, ZiaurRehman Tanoli, Krister Wennerberg, Brinton Seashore-Ludlow, Olli-P. Kallioniemi, Päivi Östling, Tero Aittokallio, Saarela Jani
2020	J	`jnl`	Breeze: an integrated quality control and data analysis application for high-throughput drug screening. Bioinform. Potdar Swapnil, Aleksandr Ianevski, John-Patrick Mpindi, Dmitrii Bychkov, Clément Fiere, Philipp Ianevski, Bhagwan Yadav, Krister Wennerberg, Tero Aittokallio, Olli-P. Kallioniemi, Saarela Jani, Päivi Östling
2016	J	`jnl`	Drug response prediction by inferring pathway-response associations with Kernelized Bayesian Matrix Factorization. CoRR Muhammad Ammad-ud-din, Suleiman A. Khan, Disha Malani, Astrid Murumägi, Olli-P. Kallioniemi, Tero Aittokallio, Samuel Kaski
2016	J	`jnl`	Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization. Bioinform. Muhammad Ammad-ud-din, Suleiman A. Khan, Disha Malani, Astrid Murumägi, Olli-P. Kallioniemi, Tero Aittokallio, Samuel Kaski
2015	J	`jnl`	Impact of normalization methods on high-throughput screening data with high hit rates and drug testing with dose-response data. Bioinform. John-Patrick Mpindi, Potdar Swapnil, Dmitrii Bychkov, Saarela Jani, Khalid Saeed, Krister Wennerberg, Tero Aittokallio, Päivi Östling, Olli-P. Kallioniemi
2014	J	`jnl`	Identification of structural features in chemicals associated with cancer drug response: a systematic data-driven analysis. Bioinform. Suleiman A. Khan, Seppo Virtanen, Olli-P. Kallioniemi, Krister Wennerberg, Antti Poso, Samuel Kaski
2014	J	`jnl`	Integrative and Personalized QSAR Analysis in Cancer by Kernelized Bayesian Matrix Factorization. J. Chem. Inf. Model. Muhammad Ammad-ud-din, Elisabeth Georgii, Mehmet Gönen, Tuomo Laitinen, Olli-P. Kallioniemi, Krister Wennerberg, Antti Poso, Samuel Kaski
2012	J	`jnl`	Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs. BMC Bioinform. Suleiman A. Khan, Ali Faisal, John Mpindi, Juuso A. Parkkinen, Tuomo Kalliokoski, Antti Poso, Olli-P. Kallioniemi, Krister Wennerberg, Samuel Kaski
2012	—	`conf`	Delivering ICT infrastructure for biomedical research. WICSA/ECSA Companion Volume Tommi H. Nyrönen, Jarno Laitinen, Olli Tourunen, Danny Sternkopf, Risto Laurikainen, Per Öster, Pekka T. Lehtovuori, Timo A. Miettinen, Tomi Simonen, Teemu Perheentupa, Imre Vastrik, Olli-P. Kallioniemi, Andrew Lyall, Janet M. Thornton
2011	J	`jnl`	Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data. BioData Min. Sami Kilpinen, Kalle A. Ojala, Olli-P. Kallioniemi
2011	J	`jnl`	On the organization of bioinformatics core services in biology-based research institutes. Bioinform. Olli-P. Kallioniemi, Lodewyk F. A. Wessels, Alfonso Valencia
2009	J	`jnl`	Comparison of Affymetrix data normalization methods using 6, 926 experiments across five array generations. BMC Bioinform. Reija Autio, Sami Kilpinen, Matti Saarela, Olli-P. Kallioniemi, Sampsa Hautaniemi, Jaakko Astola
2009	J	`jnl`	Comparison of structure fingerprint and molecular interaction field based methods in explaining biological similarity of small molecules in cell-based screens. J. Comput. Aided Mol. Des. Pekka Tiikkainen, Antti Poso, Olli-P. Kallioniemi
2009	J	`jnl`	Critical Comparison of Virtual Screening Methods against the MUV Data Set. J. Chem. Inf. Model. Pekka Tiikkainen, Patrick Markt, Gerhard Wolber, Johannes Kirchmair, Simona Distinto, Antti Poso, Olli-P. Kallioniemi
2003	J	`jnl`	A novel strategy for microarray quality control using Bayesian networks. Bioinform. Sampsa Hautaniemi, Henrik Edgren, Petri Vesanen, Maija Wolf, Anna-Kaarina Järvinen, Olli Yli-Harja, Jaakko Astola, Olli-P. Kallioniemi, Outi Monni
2003	J	`jnl`	Analysis and Visualization of Gene Expression Microarray Data in Human Cancer Using Self-Organizing Maps. Mach. Learn. Sampsa Hautaniemi, Olli Yli-Harja, Jaakko Astola, Päivikki Kauraniemi, Anne Kallioniemi, Maija Wolf, Jimmy Ruiz, Spyro Mousses, Olli-P. Kallioniemi
2002	J	`jnl`	Simulation Toolbox for 3D-FISH Spot-Counting Algorithms. Real Time Imaging Artyom M. Grigoryan, Galen Hostetter, Olli-P. Kallioniemi, Edward R. Dougherty
2000	J	`jnl`	Distance-Based Reconstruction of Tree Models for Oncogenesis. J. Comput. Biol. Richard Desper, Feng Jiang, Olli-P. Kallioniemi, Holger Moch, Christos H. Papadimitriou, Alejandro A. Schäffer
1999	J	`jnl`	Inferring Tree Models for Oncogenesis from Comparative Genome Hybridization Data. J. Comput. Biol. Richard Desper, Feng Jiang, Olli-P. Kallioniemi, Holger Moch, Christos H. Papadimitriou, Alejandro A. Schäffer