Olli-P. Kallioniemi

19 papers Journal 18Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data.
Nucleic Acids Res.
Potdar Swapnil, Filipp Ianevski, Aleksandr Ianevski, ZiaurRehman Tanoli, Krister Wennerberg, Brinton Seashore-Ludlow, Olli-P. Kallioniemi, Päivi Östling, Tero Aittokallio, Saarela Jani
2020 J jnl
Breeze: an integrated quality control and data analysis application for high-throughput drug screening.
Bioinform.
Potdar Swapnil, Aleksandr Ianevski, John-Patrick Mpindi, Dmitrii Bychkov, Clément Fiere, Philipp Ianevski, Bhagwan Yadav, Krister Wennerberg, Tero Aittokallio, Olli-P. Kallioniemi, Saarela Jani, Päivi Östling
2016 J jnl
Drug response prediction by inferring pathway-response associations with Kernelized Bayesian Matrix Factorization.
CoRR
Muhammad Ammad-ud-din, Suleiman A. Khan, Disha Malani, Astrid Murumägi, Olli-P. Kallioniemi, Tero Aittokallio, Samuel Kaski
2016 J jnl
Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization.
Bioinform.
Muhammad Ammad-ud-din, Suleiman A. Khan, Disha Malani, Astrid Murumägi, Olli-P. Kallioniemi, Tero Aittokallio, Samuel Kaski
2015 J jnl
Impact of normalization methods on high-throughput screening data with high hit rates and drug testing with dose-response data.
Bioinform.
John-Patrick Mpindi, Potdar Swapnil, Dmitrii Bychkov, Saarela Jani, Khalid Saeed, Krister Wennerberg, Tero Aittokallio, Päivi Östling, Olli-P. Kallioniemi
2014 J jnl
Identification of structural features in chemicals associated with cancer drug response: a systematic data-driven analysis.
Bioinform.
Suleiman A. Khan, Seppo Virtanen, Olli-P. Kallioniemi, Krister Wennerberg, Antti Poso, Samuel Kaski
2014 J jnl
Integrative and Personalized QSAR Analysis in Cancer by Kernelized Bayesian Matrix Factorization.
J. Chem. Inf. Model.
Muhammad Ammad-ud-din, Elisabeth Georgii, Mehmet Gönen, Tuomo Laitinen, Olli-P. Kallioniemi, Krister Wennerberg, Antti Poso, Samuel Kaski
2012 J jnl
Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs.
BMC Bioinform.
Suleiman A. Khan, Ali Faisal, John Mpindi, Juuso A. Parkkinen, Tuomo Kalliokoski, Antti Poso, Olli-P. Kallioniemi, Krister Wennerberg, Samuel Kaski
2012 — conf
Delivering ICT infrastructure for biomedical research.
WICSA/ECSA Companion Volume
Tommi H. Nyrönen, Jarno Laitinen, Olli Tourunen, Danny Sternkopf, Risto Laurikainen, Per Öster, Pekka T. Lehtovuori, Timo A. Miettinen, Tomi Simonen, Teemu Perheentupa, Imre Vastrik, Olli-P. Kallioniemi, Andrew Lyall, Janet M. Thornton
2011 J jnl
Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data.
BioData Min.
Sami Kilpinen, Kalle A. Ojala, Olli-P. Kallioniemi
2011 J jnl
On the organization of bioinformatics core services in biology-based research institutes.
Bioinform.
Olli-P. Kallioniemi, Lodewyk F. A. Wessels, Alfonso Valencia
2009 J jnl
Comparison of Affymetrix data normalization methods using 6, 926 experiments across five array generations.
BMC Bioinform.
Reija Autio, Sami Kilpinen, Matti Saarela, Olli-P. Kallioniemi, Sampsa Hautaniemi, Jaakko Astola
2009 J jnl
Comparison of structure fingerprint and molecular interaction field based methods in explaining biological similarity of small molecules in cell-based screens.
J. Comput. Aided Mol. Des.
Pekka Tiikkainen, Antti Poso, Olli-P. Kallioniemi
2009 J jnl
Critical Comparison of Virtual Screening Methods against the MUV Data Set.
J. Chem. Inf. Model.
Pekka Tiikkainen, Patrick Markt, Gerhard Wolber, Johannes Kirchmair, Simona Distinto, Antti Poso, Olli-P. Kallioniemi
2003 J jnl
A novel strategy for microarray quality control using Bayesian networks.
Bioinform.
Sampsa Hautaniemi, Henrik Edgren, Petri Vesanen, Maija Wolf, Anna-Kaarina Järvinen, Olli Yli-Harja, Jaakko Astola, Olli-P. Kallioniemi, Outi Monni
2003 J jnl
Analysis and Visualization of Gene Expression Microarray Data in Human Cancer Using Self-Organizing Maps.
Mach. Learn.
Sampsa Hautaniemi, Olli Yli-Harja, Jaakko Astola, Päivikki Kauraniemi, Anne Kallioniemi, Maija Wolf, Jimmy Ruiz, Spyro Mousses, Olli-P. Kallioniemi
2002 J jnl
Simulation Toolbox for 3D-FISH Spot-Counting Algorithms.
Real Time Imaging
Artyom M. Grigoryan, Galen Hostetter, Olli-P. Kallioniemi, Edward R. Dougherty
2000 J jnl
Distance-Based Reconstruction of Tree Models for Oncogenesis.
J. Comput. Biol.
Richard Desper, Feng Jiang, Olli-P. Kallioniemi, Holger Moch, Christos H. Papadimitriou, Alejandro A. Schäffer
1999 J jnl
Inferring Tree Models for Oncogenesis from Comparative Genome Hybridization Data.
J. Comput. Biol.
Richard Desper, Feng Jiang, Olli-P. Kallioniemi, Holger Moch, Christos H. Papadimitriou, Alejandro A. Schäffer