Olivier Taboureau

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
J. Cheminformatics
Viet-Khoa Tran-Nguyen, Ulrick Fineddie Randriharimanamizara, Olivier Taboureau
2024 J jnl
Adv. Intell. Syst.
Viet-Khoa Tran-Nguyen, Anne-Claude Camproux, Olivier Taboureau
2021 J jnl
J. Cheminformatics
Bryan Dafniet, Natacha Cerisier, Batiste Boezio, Anaelle Clary, Pierre Ducrot, Thierry Dorval, Arnaud Gohier, David Brown, Karine Audouze, Olivier Taboureau
2019 J jnl
Bioinform.
Alejandro Aguayo-Orozco, Karine Audouze, Troels Siggaard, Robert Barouki, Søren Brunak, Olivier Taboureau
2016 J jnl
Database J. Biol. Databases Curation
Jens Kringelum, Sonny Kim Kjærulff, Søren Brunak, Ole Lund, Tudor I. Oprea, Olivier Taboureau
2013 J jnl
Nucleic Acids Res.
Sonny Kim Kjærulff, Louis Wich, Jens Kringelum, Ulrik Plesner Jacobsen, Irene Kouskoumvekaki, Karine Audouze, Ole Lund, Søren Brunak, Tudor I. Oprea, Olivier Taboureau
2013 J jnl
J. Chem. Inf. Model.
Irene Kouskoumvekaki, Rasmus K. Petersen, Filip Fratev, Olivier Taboureau, Thomas E. Nielsen, Tudor I. Oprea, Si B. Sonne, Esben N. Flindt, Svava Ósk Jónsdóttir, Karsten Kristiansen
2013 J jnl
Bioinform.
Olivier Taboureau, Ulrik Plesner Jacobsen, Christian Kalhauge, Daniel Edsgärd, Olga Rigina, Ramneek Gupta, Karine Audouze
2012 J jnl
J. Comput. Aided Mol. Des.
Tudor I. Oprea, Olivier Taboureau, Cristian Bologa
2011 J jnl
Nucleic Acids Res.
Olivier Taboureau, Sonny Kim Nielsen, Karine Audouze, Nils Weinhold, Daniel Edsgärd, Francisco S. Roque, Irene Kouskoumvekaki, Alina Bora, Ramona Curpan, Thomas Skøt Jensen, Søren Brunak, Tudor I. Oprea
2010 J jnl
PLoS Comput. Biol.
Karine Audouze, Agnieszka Sierakowska Juncker, Francisco S. Roque, Konrad Krysiak-Baltyn, Nils Weinhold, Olivier Taboureau, Thomas Skøt Jensen, Søren Brunak
2009 J jnl
J. Chem. Inf. Model.
Poongavanam Vasanthanathan, Jozef Hritz, Olivier Taboureau, Lars Olsen, Flemming Steen Jørgensen, Nico P. E. Vermeulen, Chris Oostenbrink
redb/extractors/pe_extractors/pe_overlay.py
← Index redb/extractors/pe_extractors/pe_overlay.py python
from hashlib import md5, sha1, sha256
import inspect
from datetime import datetime, timezone
from typing import Any

import magic
from magika import Magika

from redb.extractors.enum import Tag
from redb.extractors.pe_extractor import PEExtractor
from redb.models.dataclasses import PEOverlay


class PEOverlayExtractor(PEExtractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        pe=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            pe,
        )
        self.elastic_index = self.index_prefix + "-pe_overlay"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def tag(self):
        return Tag.PE_OVERLAY.value

    def _extract_pe_overlay(self):
        self.log.debug(inspect.currentframe().f_code.co_name)
        overlay = self.pe.get_overlay()
        if overlay:
            return PEOverlay(
                _id=sha256(overlay).hexdigest(),
                overlay_size=len(overlay),
                overlay_entropy=self.calculate_entropy(overlay),
                overlay_offset=self.pe.get_overlay_data_start_offset(),
                overlay_mimetype=magic.from_buffer(overlay, mime=True),
                overlay_type=magic.from_buffer(overlay),
                overlay_magika=Magika().identify_bytes(overlay).output.ct_label,
                overlay_sha256=sha256(overlay).hexdigest(),
                overlay_sha1=sha1(overlay).hexdigest(),
                overlay_md5=md5(overlay).hexdigest(),
            )
        return None

    def extract(self):
        try:
            self.log.debug(inspect.currentframe().f_code.co_name)
            overlay = self._extract_pe_overlay()
            # self.export_to_elastic([overlay])  # Let the exporters handle this
            return overlay
        except Exception as e:
            self.log.error(f"Error extracting PE overlay: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        if exporter_type == "ElasticsearchExporter":
            return self.extract()
        elif exporter_type == "ClickHouseExporter":
            overlay = self.extract()
            if overlay is None:
                return None
            
            data = []
            current_time = datetime.now(timezone.utc)
            
            data.append([
                self.sha256,              # sha256
                self.md5,                 # md5
                self.sha1,                # sha1
                overlay.overlay_size,     # overlay_size
                overlay.overlay_entropy,  # overlay_entropy
                overlay.overlay_offset,   # overlay_offset
                overlay.overlay_mimetype, # overlay_mimetype
                overlay.overlay_type,     # overlay_type
                overlay.overlay_magika,   # overlay_magika
                overlay.overlay_sha256,   # overlay_sha256
                overlay.overlay_sha1,     # overlay_sha1
                overlay.overlay_md5,      # overlay_md5
                current_time             # analysis_date
            ])
            
            column_names = [
                'sha256', 'md5', 'sha1', 'overlay_size', 'overlay_entropy',
                'overlay_offset', 'overlay_mimetype', 'overlay_type', 'overlay_magika',
                'overlay_sha256', 'overlay_sha1', 'overlay_md5',
                'analysis_date'
            ]
            
            if not data:
                return None

            column_type_names = [
                'FixedString(64)', 'FixedString(32)', 'FixedString(40)',
                'UInt64', 'Float64', 'UInt64',
                'LowCardinality(String)', 'LowCardinality(String)', 'LowCardinality(String)',
                'FixedString(64)', 'FixedString(40)', 'FixedString(32)',
                'DateTime64(3, \'UTC\')'
            ]

            return (data, column_names, column_type_names)

    def get_clickhouse_table(self) -> str:
        return "redb_pe_overlays"