Olivier Michielin

29 papers Misc 1Journal 26Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
FRACCO: A gold-standard annotated corpus of oncological entities with ICD-O-3.1 normalisation.
CoRR
Johann Pignat, Milena Vucetic, Christophe Gaudet-Blavignac, Jamil Zaghir, Amandine Stettler, Fanny Amrein, Jonatan Bonjour, Jean-Philippe Goldman, Olivier Michielin, Christian Lovis, Mina Bjelogrlic
2025 J jnl
MTBBench: A Multimodal Sequential Clinical Decision-Making Benchmark in Oncology.
CoRR
Kiril Vasilev, Alexandre Misrahi, Eeshaan Jain, Phil F. Cheng, Petros Liakopoulos, Olivier Michielin, Michael Moor, Charlotte Bunne
2024 J jnl
HoverFast: an accurate, high-throughput, clinically deployable nuclear segmentation tool for brightfield digital pathology images.
J. Open Source Softw.
Petros Liakopoulos, Julien Massonnet, Jonatan Bonjour, Medya Tekes Mizrakli, Simon Graham, Michel A. Cuendet, Amanda H. Seipel, Olivier Michielin, Doron Merkler, Andrew Janowczyk
2023 J jnl
Multilingual RECIST classification of radiology reports using supervised learning.
Frontiers Digit. Health
Luc Mottin, Jean-Philippe Goldman, Christoph Jäggli, Rita Achermann, Julien Gobeill, Julien Knafou, Julien Ehrsam, Alexandre Wicky, Camille L. Gerard, Tanja Schwenk, Mélinda Charrier, Petros Tsantoulis, Christian Lovis, Alexander B. Leichtle, Michael Kiessling, Olivier Michielin, Sylvain Pradervand, Vasiliki Foufi, Patrick Ruch
2023 J jnl
SwissParam 2023: A Modern Web-Based Tool for Efficient Small Molecule Parametrization.
J. Chem. Inf. Model.
Marine Bugnon, Mathilde Goullieux, Ute F. Röhrig, Marta A. S. Perez, Antoine Daina, Olivier Michielin, Vincent Zoete
2022 Misc conf
Classification of oncology treatment responses from radiology reports with supervised machine learning.
AMIA
Luc Mottin, Jean-Philippe Goldman, Christoph Jäggli, Rita Achermann, Julien Gobeill, Julien Knafou, Julien Ehrsam, Alexandre Wicky, Camille L. Gerard, Tanja Schwenk, Mélinda Charrier, Petros Tsantoulis, Christian Lovis, Alexander B. Leichtle, Michael Kiessling, Olivier Michielin, Sylvain Pradervand, Vasiliki Foufi, Patrick Ruch
2022 J jnl
SwissBioisostere 2021: updated structural, bioactivity and physicochemical data delivered by a reshaped web interface.
Nucleic Acids Res.
Alessandro Cuozzo, Antoine Daina, Marta A. S. Perez, Olivier Michielin, Vincent Zoete
2020 — conf
A Process Mining Approach to Statistical Analysis: Application to a Real-World Advanced Melanoma Dataset.
ICPM Workshops
Erica Tavazzi, Camille L. Gerard, Olivier Michielin, Alexandre Wicky, Roberto Gatta, Michel A. Cuendet
2020 — conf
SPHN/PHRT - MedCo in Action: Empowering the Swiss Molecular Tumor Board with Privacy-Preserving and Real-Time Patient Discovery.
MIE
Jean Louis Raisaro, Juan Ramón Troncoso-Pastoriza, Sylvain Pradervand, Michel A. Cuendet, Mickaël Misbach, João Sá Sousa, Francesco Marino, Nicolas Freundler, Nicolas Rosat, David Cavin, Alexander B. Leichtle, Jacques Fellay, Olivier Michielin, Jean-Pierre Hubaux
2019 J jnl
MedCo: Enabling Secure and Privacy-Preserving Exploration of Distributed Clinical and Genomic Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jean Louis Raisaro, Juan Ramón Troncoso-Pastoriza, Mickaël Misbach, João Sá Sousa, Sylvain Pradervand, Edoardo Missiaglia, Olivier Michielin, Bryan Ford, Jean-Pierre Hubaux
2019 J jnl
SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules.
Nucleic Acids Res.
Antoine Daina, Olivier Michielin, Vincent Zoete
2016 J jnl
Attracting cavities for docking. Replacing the rough energy landscape of the protein by a smooth attracting landscape.
J. Comput. Chem.
Vincent Zoete, Thierry Schüpbach, Christophe Bovigny, Prasad Chaskar, Antoine Daina, Ute F. Röhrig, Olivier Michielin
2016 J jnl
SwissSimilarity: A Web Tool for Low to Ultra High Throughput Ligand-Based Virtual Screening.
J. Chem. Inf. Model.
Vincent Zoete, Antoine Daina, Christophe Bovigny, Olivier Michielin
2014 J jnl
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.
Nucleic Acids Res.
Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel
2014 J jnl
SwissTargetPrediction: a web server for target prediction of bioactive small molecules.
Nucleic Acids Res.
David Gfeller, Aurélien Grosdidier, Matthias Wirth, Antoine Daina, Olivier Michielin, Vincent Zoete
2014 J jnl
iLOGP: A Simple, Robust, and Efficient Description of
J. Chem. Inf. Model.
Antoine Daina, Olivier Michielin, Vincent Zoete
2013 J jnl
Protein pocket and ligand shape comparison and its application in virtual screening.
J. Comput. Aided Mol. Des.
Matthias Wirth, Andrea Volkamer, Vincent Zoete, Friedrich Rippmann, Olivier Michielin, Matthias Rarey, Wolfgang H. B. Sauer
2013 J jnl
Shaping the interaction landscape of bioactive molecules.
Bioinform.
David Gfeller, Olivier Michielin, Vincent Zoete
2013 J jnl
SwissBioisostere: a database of molecular replacements for ligand design.
Nucleic Acids Res.
Matthias Wirth, Vincent Zoete, Olivier Michielin, Wolfgang H. B. Sauer
2013 J jnl
SwissSidechain: a molecular and structural database of non-natural sidechains.
Nucleic Acids Res.
David Gfeller, Olivier Michielin, Vincent Zoete
2012 J jnl
Defining and searching for structural motifs using DeepView/Swiss-PdbViewer.
BMC Bioinform.
Maria U. Johansson, Vincent Zoete, Olivier Michielin, Nicolas Guex
2012 J jnl
Expanding molecular modeling and design tools to non-natural sidechains.
J. Comput. Chem.
David Gfeller, Olivier Michielin, Vincent Zoete
2011 J jnl
Fast docking using the CHARMM force field with EADock DSS.
J. Comput. Chem.
Aurélien Grosdidier, Vincent Zoete, Olivier Michielin
2011 J jnl
SwissDock, a protein-small molecule docking web service based on EADock DSS.
Nucleic Acids Res.
Aurélien Grosdidier, Vincent Zoete, Olivier Michielin
2011 J jnl
SwissParam: A fast force field generation tool for small organic molecules.
J. Comput. Chem.
Vincent Zoete, Michel A. Cuendet, Aurélien Grosdidier, Olivier Michielin
2010 J jnl
Fourier transform convolution integrals applied to generalized Born molecular volume.
J. Comput. Chem.
Thierry Schüpbach, Vincent Zoete, Brice Tsakam-Sotché, Olivier Michielin
2009 J jnl
Blind docking of 260 protein-ligand complexes with EADock 2.0.
J. Comput. Chem.
Aurélien Grosdidier, Vincent Zoete, Olivier Michielin
2009 J jnl
Docking to heme proteins.
J. Comput. Chem.
Ute F. Röhrig, Aurélien Grosdidier, Vincent Zoete, Olivier Michielin
2003 J jnl
Protein-ligand binding free energy estimation using molecular mechanics and continuum electrostatics. Application to HIV-1 protease inhibitors.
J. Comput. Aided Mol. Des.
Vincent Zoete, Olivier Michielin, Martin Karplus