Olivier Gandrillon

31 papers B 2C 1Journal 24Unranked 3

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Multiscale modeling of the spatial structure of stem cells in neuroblastoma patient-derived tumoroids reveals a critical role for a short-range diffusive process. PLoS Comput. Biol. Thi Nhu Thao Nguyen, Catherine Koering, Elodie Vallin, Sandrine Gonin-Giraud, Laura Broutier, Samuel Bernard, Fabien Crauste, Olivier Gandrillon
2024	J	`jnl`	Modeling relaxation experiments with a mechanistic model of gene expression. BMC Bioinform. Maxime Estavoyer, Marion Dufeu, Grégoire Ranson, Sylvain Lefort, Thibault Voeltzel, Véronique Maguer-Satta, Olivier Gandrillon, Thomas Lepoutre
2024	J	`jnl`	TopoDoE: a design of experiment strategy for selection and refinement in ensembles of executable gene regulatory networks. BMC Bioinform. Matteo Bouvier, Souad Zreika, Elodie Vallin, Camille Fourneaux, Sandrine Gonin-Giraud, Arnaud Bonnaffoux, Olivier Gandrillon
2023	J	`jnl`	Kernel-Based Testing for Single-Cell Differential Analysis. CoRR Anthony Ozier-Lafontaine, Camille Fourneaux, Ghislain Durif, Céline Vallot, Olivier Gandrillon, Sandrine Giraud, Bertrand Michel, Franck Picard
2023	J	`jnl`	One model fits all: Combining inference and simulation of gene regulatory networks. PLoS Comput. Biol. Elias Ventre, Ulysse Herbach, Thibault Espinasse, Gérard Benoit, Olivier Gandrillon
2023	J	`jnl`	scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data. Silico Biol. Maxime Lepetit, Mirela Diana Ilie, Marie Chanal, Gerald Raverot, Philippe Bertolino, Christophe Arpin, Franck Picard, Olivier Gandrillon
2021	J	`jnl`	Modeling and characterization of inter-individual variability in CD8 T cell responses in mice. Silico Biol. Chloe Audebert, Daphné Laubreton, Christophe Arpin, Olivier Gandrillon, Jacqueline Marvel, Fabien Crauste
2021	J	`jnl`	Practical identifiability in the frame of nonlinear mixed effects models: the example of the in vitro erythropoiesis. BMC Bioinform. Ronan Duchesne, Anissa Guillemin, Olivier Gandrillon, Fabien Crauste
2019	J	`jnl`	Calibration, Selection and Identifiability Analysis of a Mathematical Model of the Silico Biol. Ronan Duchesne, Anissa Guillemin, Fabien Crauste, Olivier Gandrillon
2019	J	`jnl`	WASABI: a dynamic iterative framework for gene regulatory network inference. BMC Bioinform. Arnaud Bonnaffoux, Ulysse Herbach, Angélique Richard, Anissa Guillemin, Sandrine Gonin-Giraud, Pierre-Alexis Gros, Olivier Gandrillon
2018	C	`conf`	A Cloud-aware Autonomous Workflow Engine and Its Application to Gene Regulatory Networks Inference. CLOSER Arnaud Bonnaffoux, Eddy Caron, Hadrien Croubois, Olivier Gandrillon
2018	J	`jnl`	SINCERITIES: inferring gene regulatory networks from time-stamped single cell transcriptional expression profiles. Bioinform. Nan Papili Gao, S. M. Minhaz Ud-Dean, Olivier Gandrillon, Rudiyanto Gunawan
2016	J	`jnl`	IL-2 sensitivity and exogenous IL-2 concentration gradient tune the productive contact duration of CD8 BMC Syst. Biol. Xuefeng Gao, Christophe Arpin, Jacqueline Marvel, Sotiris A. Prokopiou, Olivier Gandrillon, Fabien Crauste
2015	J	`jnl`	Sequential pattern mining for discovering gene interactions and their contextual information from biomedical texts. J. Biomed. Semant. Peggy Cellier, Thierry Charnois, Marc Plantevit, Christophe Rigotti, Bruno Crémilleux, Olivier Gandrillon, Jirí Kléma, Jean-Luc Manguin
2014	J	`jnl`	Finding maximal homogeneous clique sets. Knowl. Inf. Syst. Pierre-Nicolas Mougel, Christophe Rigotti, Marc Plantevit, Olivier Gandrillon
2014	J	`jnl`	Multiscale Modeling of the Early CD8 T-Cell Immune Response in Lymph Nodes: An Integrative Study. Comput. Sotiris A. Prokopiou, Loïc Barbarroux, Samuel Bernard, Julien Mafille, Yann Leverrier, Christophe Arpin, Jacqueline Marvel, Olivier Gandrillon, Fabien Crauste
2012	—	`conf`	Finding Collections of k-Clique Percolated Components in Attributed Graphs. PAKDD (2) Pierre-Nicolas Mougel, Christophe Rigotti, Olivier Gandrillon
2011	—	`conf`	Extraction sous contraintes d'ensembles de cliques homogènes. EGC Pierre-Nicolas Mougel, Marc Plantevit, Christophe Rigotti, Olivier Gandrillon, Jean-François Boulicaut
2010	J	`jnl`	On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter. BMC Syst. Biol. Antoine Coulon, Olivier Gandrillon, Guillaume Beslon
2010	—	`ch.`	Using a Solver Over the String Pattern Domain to Analyze Gene Promoter Sequences. Inductive Databases and Constraint-Based Data Mining Christophe Rigotti, Ieva Mitasiunaite, Jérémy Besson, Laurène Meyniel, Jean-François Boulicaut, Olivier Gandrillon
2009	J	`jnl`	Extracting Signature Motifs from Promoter Sets of Differentially Expressed Genes. Silico Biol. Ieva Mitasiunaite, Christophe Rigotti, Stéphane Schicklin, Laurène Meyniel, Jean-François Boulicaut, Olivier Gandrillon
2009	B	`conf`	Learning Constrained Edit State Machines. ICTAI Laurent Boyer, Olivier Gandrillon, Amaury Habrard, Mathilde Pellerin, Marc Sebban
2008	J	`jnl`	Constraint-Based Knowledge Discovery from SAGE Data. Silico Biol. Jirí Kléma, Sylvain Blachon, Arnaud Soulet, Bruno Crémilleux, Olivier Gandrillon
2008	J	`jnl`	SQUAT: A web tool to mine human, murine and avian SAGE data. BMC Bioinform. Johan Leyritz, Stéphane Schicklin, Sylvain Blachon, Céline Keime, Céline Robardet, Jean-François Boulicaut, Jérémy Besson, Ruggero G. Pensa, Olivier Gandrillon
2007	J	`jnl`	Clustering Formal Concepts to Discover Biologically Relevant Knowledge from Gene Expression Data. Silico Biol. Sylvain Blachon, Ruggero G. Pensa, Jérémy Besson, Céline Robardet, Jean-François Boulicaut, Olivier Gandrillon
2007	J	`jnl`	Modélisation cellulaire pour l'émergence de structures multiprotéiques auto-organisées. Tech. Sci. Informatiques Antoine Coulon, Hédi Soula, Olivier Mazet, Olivier Gandrillon, Guillaume Beslon
2007	J	`jnl`	Unexpected observations after mapping LongSAGE tags to the human genome. BMC Bioinform. Céline Keime, Marie Sémon, Dominique Mouchiroud, Laurent Duret, Olivier Gandrillon
2006	B	`conf`	Mining Plausible Patterns from Genomic Data. CBMS Jirí Kléma, Arnaud Soulet, Bruno Crémilleux, Sylvain Blachon, Olivier Gandrillon
2005	J	`jnl`	Modeling the emergence of multi-protein dynamic structures by principles of self-organization through the use of 3DSpi, a multi-agent-based software. BMC Bioinform. Hédi Soula, Céline Robardet, François Perrin, Sébastien Gripon, Guillaume Beslon, Olivier Gandrillon
2004	J	`jnl`	Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries. BMC Bioinform. Céline Keime, Francesca Damiola, Dominique Mouchiroud, Laurent Duret, Olivier Gandrillon
2003	—	`conf`	Mining Concepts from Large SAGE Gene Expression Matrices. KDID François Rioult, Céline Robardet, Sylvain Blachon, Bruno Crémilleux, Olivier Gandrillon, Jean-François Boulicaut