Olivier Ecabert

25 papers B 6Journal 6Unranked 13
YearRankTypeTitle / Venue / Authors
2015 conf
FIMH
Roch Molléro, Dominik Neumann, Marc-Michel Rohé, Manasi Datar, Hervé Lombaert, Nicholas Ayache, Dorin Comaniciu, Olivier Ecabert, Marcello Chinali, Gabriele Rinelli, Xavier Pennec, Maxime Sermesant, Tommaso Mansi
2013 J jnl
IEEE Trans. Medical Imaging
Peng Wang, Olivier Ecabert, Terrence Chen, Michael Wels, Johannes Rieber, Martin Ostermeier, Dorin Comaniciu
2011 conf
MICCAI (1)
Peng Wang, Terrence Chen, Olivier Ecabert, Simone Prummer, Martin Ostermeier, Dorin Comaniciu
2011 J jnl
Medical Image Anal.
Olivier Ecabert, Jochen Peters, Matthew J. Walker, Thomas Ivanc, Cristian Lorenz, Jens von Berg, Jonathan Lessick, Mani Vembar, Jürgen Weese
2010 conf
MICCAI (1)
Jochen Peters, Jonathan Lessick, Reinhard Kneser, Irina Wächter, Mani Vembar, Olivier Ecabert, Jürgen Weese
2010 J jnl
IEEE Trans. Medical Imaging
Robert Manzke, Carsten Meyer, Olivier Ecabert, Jochen Peters, Niels J. Noordhoek, Aravinda Thiagalingam, Vivek Y. Reddy, Raymond C. Chan, Jürgen Weese
2010 conf
ISBI
Pol Grasland-Mongrain, Jochen Peters, Olivier Ecabert
2010 J jnl
Medical Image Anal.
Jochen Peters, Olivier Ecabert, Carsten Meyer, Reinhard Kneser, Jürgen Weese
2010 conf
STACOM/CESC
Jürgen Weese, Jochen Peters, Carsten Meyer, Irina Wächter, Reinhard Kneser, Helko Lehmann, Olivier Ecabert, Hans Barschdorf, Raghed Hanna, Frank M. Weber
2009 B conf
Image Processing
Carsten Meyer, Olivier Ecabert, Jochen Peters, Reinhard Kneser, Robert Manzke, Raymond C. Chan, Jürgen Weese
2009 conf
FIMH
Helko Lehmann, Reinhard Kneser, Mirja Neizel, Jochen Peters, Olivier Ecabert, Harald Kühl, Malte Kelm, Jürgen Weese
2009 conf
FIMH
Jochen Peters, Olivier Ecabert, Holger Schmitt, Michael Grass, Jürgen Weese
2008 conf
MICCAI (2)
Carsten Meyer, Robert Manzke, Jochen Peters, Olivier Ecabert, Reinhard Kneser, Vivek Y. Reddy, Raymond C. Chan, Jürgen Weese
2008 J jnl
IEEE Trans. Medical Imaging
Olivier Ecabert, Jochen Peters, Hauke Schramm, Cristian Lorenz, Jens von Berg, Matthew J. Walker, Mani Vembar, Mark E. Olszewski, Krishna Subramanyan, Guy Lavi, Jürgen Weese
2008 B conf
Image Processing
Jochen Peters, Olivier Ecabert, Cristian Lorenz, Jens von Berg, Matthew J. Walker, Thomas Ivanc, Mani Vembar, Mark E. Olszewski, Jürgen Weese
2007 conf
MICCAI (2)
Jochen Peters, Olivier Ecabert, Carsten Meyer, Hauke Schramm, Reinhard Kneser, Alexandra Groth, Jürgen Weese
2007 B conf
Image Processing
Olivier Ecabert, Jochen Peters, Matthew J. Walker, Jens von Berg, Cristian Lorenz, Mani Vembar, Mark E. Olszewski, Jürgen Weese
2007 B conf
Image Processing
Jochen Peters, Olivier Ecabert, Hauke Schramm, Jürgen Weese
2006 B conf
Image Processing
Olivier Ecabert, Jochen Peters, Jürgen Weese
2006 B conf
Image Processing
Hauke Schramm, Olivier Ecabert, Jochen Peters, Vasanth Philomin, Jürgen Weese
2006 conf
Bildverarbeitung für die Medizin
Thomas Stehle, Olivier Ecabert
2006 conf
Image-Guided Procedures
Helko Lehmann, Olivier Ecabert, Dieter Geller, Gundolf Kiefer, Jürgen Weese
2004 J jnl
Pattern Recognit. Lett.
Olivier Ecabert, Jean-Philippe Thiran
2003 conf
MICCAI (1)
Olivier Ecabert, Torsten Butz, Arya Nabavi, Jean-Philippe Thiran
2002 conf
ICPR (2)
Olivier Ecabert, Jean-Philippe Thiran
redb/extractors/extractor.py
← Index redb/extractors/extractor.py python
import hashlib
import inspect
from abc import ABCMeta, abstractmethod
from dataclasses import asdict
from functools import cached_property
from datetime import datetime, timezone
import math
from typing import Counter, List, Optional, Dict, Any, Tuple
from redb import settings
from redb.models.dataclasses import Hash
from .database_exporters import DatabaseExporter, ElasticsearchExporter, ClickHouseExporter, PrintExporter

class Extractor(metaclass=ABCMeta):
    def __init__(
        self,
        filepath: str,
        log: Any,
        exporters: Optional[List[DatabaseExporter]] = None,
        index_prefix: Optional[str] = None,
        source: Optional[str] = None,
        elastic_index: Optional[str] = None,
        known_benign: bool = False,
        known_malicious: bool = False,
        precomputed_hashes: Optional[Dict[str, str]] = None,
    ):
        self.log = log
        self.log.debug(f"Creating {self.__class__.__name__}")
        self.filepath = filepath
        self.source = source
        self.exporters = exporters or []
        self.index_prefix = index_prefix if index_prefix else settings.ELASTIC_BINARIES_COLLECTION
        self.elastic_index = self.index_prefix + (elastic_index if elastic_index else "")
        self.known_benign = known_benign
        self.known_malicious = known_malicious

        # Use precomputed hashes if provided (e.g., from machofile, pefile)
        # Otherwise compute them from binary
        if precomputed_hashes:
            self.md5 = precomputed_hashes.get('md5') or precomputed_hashes.get('MD5')
            self.sha1 = precomputed_hashes.get('sha1') or precomputed_hashes.get('SHA1')
            self.sha256 = precomputed_hashes.get('sha256') or precomputed_hashes.get('SHA256')
        else:
            self.md5 = hashlib.md5(self.binary).hexdigest()
            self.sha1 = hashlib.sha1(self.binary).hexdigest()
            self.sha256 = hashlib.sha256(self.binary).hexdigest()
        self.hash = Hash(self.md5, self.sha1, self.sha256)

    @cached_property
    def binary(self):
        with open(self.filepath, "rb") as f:
            data = f.read()
        return data

    @property
    @abstractmethod
    def tag(self):
        pass

    @abstractmethod
    def extract(self):
        """
        this method defines the extracted data
        """

    @staticmethod
    def process_binary_string(s):
        # Remove \x00 padding
        s = s.rstrip(b"\x00")

        # Check if there are any non-printable characters
        has_non_printable = any(byte < 32 or byte > 126 for byte in s)

        if not has_non_printable:
            # If all characters are printable, decode the string
            return s.decode()
        else:
            # If there are non-printable characters, represent them as \xDD
            return "".join(
                [
                    f"\\x{byte:02x}" if byte < 32 or byte > 126 else chr(byte)
                    for byte in s
                ]
            )

    @staticmethod
    def remove_non_utf8(binary_string):
        decoded = b""
        for i in range(len(binary_string)):
            try:
                # Try to decode each byte
                char = binary_string[i : i + 1].decode("utf-8")
                decoded += char.encode("utf-8")
            except UnicodeDecodeError:
                # Skip this byte if it can't be decoded
                continue
        return decoded

    def calculate_entropy(self, data):
        """Calculate the entropy of a chunk of data.
        Based on pefile.SectionStructure.entropy_H.
        """
        # self.log.debug(inspect.currentframe().f_code.co_name)
        if not data:
            return 0.0

        if type(data) == str:
            counts = Counter(data)
            frequencies = ((i / len(data)) for i in counts.values())
            return - sum(f * math.log(f, 2) for f in frequencies)
        else:
            occurences = Counter(bytearray(data))
            entropy = 0
            for x in occurences.values():
                p_x = float(x) / len(data)
                entropy -= p_x * math.log(p_x, 2)
            return entropy

    @abstractmethod
    def prepare_export_data(self, exporter_type: str) -> Tuple[List[Any], List[str], List[str]]:
        """
        Prepare data for specific export type
        Returns:
            Tuple containing:
            - data: List of values to insert
            - column_names: List of column names
            - column_type_names: List of column types
        """
        pass

    def export_data(self):
        """Export data to all configured exporters

        Returns:
            True: Export succeeded
            False: Export failed (actual error)
            None: No data to export (not an error, e.g., no overlay, no signature)
        """
        self.log.debug(inspect.currentframe().f_code.co_name)
        success = True
        extracted_data = self.extract()

        if extracted_data is None:
            self.log.debug("extract() returned None, skipping export")
            return None  # No data to export, not a failure
            
        for exporter in self.exporters:
            if isinstance(exporter, PrintExporter):
                # For PrintExporter, we pass the extracted data directly
                success &= exporter.export(extracted_data)
            else:
                # Get the data prepared for this specific exporter type
                export_data = self.prepare_export_data(exporter.__class__.__name__)
                
                if export_data is None:
                    self.log.debug(f"prepare_export_data returned None for {exporter.__class__.__name__}")
                    return False
                
                if isinstance(exporter, ElasticsearchExporter):
                    success &= exporter.export(
                        export_data,
                        index=self.elastic_index,
                        tag=self.tag(),
                        hashes=asdict(self.hash),
                        known_benign=self.known_benign,
                        known_malicious=self.known_malicious
                    )
                elif isinstance(exporter, ClickHouseExporter):
                    # For ClickHouse, we need to pass the table name and the prepared data
                    success &= exporter.export(
                        export_data,
                        table=self.get_clickhouse_table(),
                        # Add these parameters explicitly
                        column_names=export_data[1] if isinstance(export_data, tuple) else None,
                        column_type_names=export_data[2] if isinstance(export_data, tuple) else None
                    )
                
        return success

    @abstractmethod
    def get_clickhouse_table(self) -> str:
        """Return the appropriate ClickHouse table name"""
        pass
    # def export_to_elastic(self, list_of_dataclasses, tag=None):
    #     self.log.debug(inspect.currentframe().f_code.co_name)

    #     if not isinstance(list_of_dataclasses, list):
    #         self.log.error("Called export_to_elastic wrongly")

    #     now_t = datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S")
    #     for dataclass_ in list_of_dataclasses:
    #         if not settings.ELASTIC_CLIENT.ping():
    #             self.log.error("[CONNECTION ERROR] ping to elastic failed")
            
    #         # Convert dataclass to dict and filter out None values
    #         document = {k: v for k, v in asdict(dataclass_).items() if v is not None}
            
    #         if tag:
    #             document["tag"] = [tag, self.tag()]
    #         else:
    #             document["tag"] = self.tag()
    #         hashes = asdict(self.hash)
    #         document |= hashes
    #         document["timestamp_utc"] = now_t
    #         # document["source"] = self.source
    #         document["known_benign"] = self.known_benign
    #         document["known_malicious"] = self.known_malicious

    #         if "_id" in document:
    #             tmp_id = document.pop("_id") + document["sha256"]
    #             _id = hashlib.sha256(tmp_id.encode()).hexdigest()
    #         else:
    #             _id = document["sha256"]

    #         # self.log.debug(f"[DEBUG] about to export {type(document)} {document}")
    #         try:
    #             doc_dump = json.dumps(document)
    #         except TypeError as e:
    #             self.log.error(
    #                 f"Failed export of document. " f"full document: {document}"
    #             )
    #             raise e

    #         # body={"doc": doc_dump,
    #         #       "doc_as_upsert": True  # Create the document if it doesn't exist
    #         # }

    #         # Check if the index exists, and create it if it doesn't
    #         # if not settings.ELASTIC_CLIENT.indices.exists(index=self.elastic_index):
    #         #     settings.ELASTIC_CLIENT.indices.create(index=self.elastic_index)
    #         # pprint(doc_dump) #DEBUG
    #         # print("[DEBUG] _id: " + _id)
    #         # print("[DEBUG] index: " + self.elastic_index)
    #         settings.ELASTIC_CLIENT.index(
    #             index=self.elastic_index, id=_id, document=doc_dump
    #         )