Olivier Colliot

151 papers A* 1A 1B 16C 1Misc 1Journal 86Unranked 44

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Performance uncertainty in medical image analysis: a large-scale investigation of confidence intervals. CoRR Pascaline Andrè, Charles Heitz, Evangelia Christodoulou, Annika Reinke, Carole H. Sudre, Michela Antonelli, Patrick Godau, M. Jorge Cardoso, Antoine Gilson, Sophie Tezenas du Montcel, Gaël Varoquaux, Lena Maier-Hein, Olivier Colliot
2025	J	`jnl`	Automatic quality control of brain 3D FLAIR MRIs for a clinical data warehouse. Medical Image Anal. Sophie Loizillon, Simona Bottani, Aurélien Maire, Sebastian Ströer, Lydia Chougar, Didier Dormont, Olivier Colliot, Ninon Burgos
2025	J	`jnl`	Confidence intervals for performance estimates in brain MRI segmentation. Medical Image Anal. Rosana El Jurdi, Gaël Varoquaux, Olivier Colliot
2025	J	`jnl`	False Promises in Medical Imaging AI? Assessing Validity of Outperformance Claims. CoRR Evangelia Christodoulou, Annika Reinke, Pascaline Andrè, Patrick Godau, Piotr Kalinowski, Rola Houhou, Selen Erkan, Carole H. Sudre, Ninon Burgos, Sofiène Boutaj, Sophie Loizillon, Maëlys Solal, Veronika Cheplygina, Charles Heitz, Michal Kozubek, Michela Antonelli, Nicola Rieke, Antoine Gilson, Leon D. Mayer, Minu Dietlinde Tizabi, Manuel Jorge Cardoso, Amber L. Simpson, Annette Kopp-Schneider, Gaël Varoquaux, Olivier Colliot, Lena Maier-Hein
2025	J	`jnl`	Medical Imaging AI Competitions Lack Fairness. CoRR Annika Reinke, Evangelia Christodoulou, Sthuthi Sadananda, A. Emre Kavur, Khrystyna Faryna, Daan Schouten, Bennett A. Landman, Carole H. Sudre, Olivier Colliot, Nicholas Heller, Sophie Loizillon, Martin Maska, Maëlys Solal, Arya Yazdan Panah, Vilma Bozgo, Ömer Sümer, Siem de Jong, Sophie Fischer, Michal Kozubek, Tim Rädsch, Nadim Hammoud, Fruzsina Molnár-Gábor, Steven Hicks, Michael A. Riegler, Anindo Saha, Vajira Thambawita, Pål Halvorsen, Amelia Jiménez-Sánchez, Qingyang Yang, Veronika Cheplygina, Sabrina Bottazzi, Alexander Seitel, Spyridon Bakas, Alexandros Karargyris, Kiran Vaidhya Venkadesh, Bram van Ginneken, Lena Maier-Hein
2025	—	`conf`	Some Hidden Traps of Confidence Intervals in Medical Image Segmentation: Coverage Issues. BRIDGE/DeCaF@MICCAI Pascaline Andrè, Charles Heitz, Evangelia Christodoulou, Annika Reinke, Carole H. Sudre, Michela Antonelli, M. Jorge Cardoso, Antoine Gilson, Sophie Tezenas du Montcel, Gaël Varoquaux, Lena Maier-Hein, Olivier Colliot
2025	J	`jnl`	The Brain Resection Multimodal Image Registration (ReMIND2Reg) 2025 Challenge. CoRR Reuben Dorent, Laura Rigolo, Colin Galvin, Junyu Chen, Mattias P. Heinrich, Aaron Carass, Olivier Colliot, Demian Wassermann, Alexandra J. Golby, Tina Kapur, William M. Wells III
2024	J	`jnl`	Automated MRI Quality Assessment of Brain T1-weighted MRI in Clinical Data Warehouses: A Transfer Learning Approach Relying on Artefact Simulation. CoRR Sophie Loizillon, Simona Bottani, Stéphane Mabille, Yannick Jacob, Aurélien Maire, Sebastian Ströer, Didier Dormont, Olivier Colliot, Ninon Burgos
2024	J	`jnl`	Automatic motion artefact detection in brain T1-weighted magnetic resonance images from a clinical data warehouse using synthetic data. Medical Image Anal. Sophie Loizillon, Simona Bottani, Aurélien Maire, Sebastian Ströer, Didier Dormont, Olivier Colliot, Ninon Burgos
2024	J	`jnl`	Automatic rating of incomplete hippocampal inversions evaluated across multiple cohorts. CoRR Lisa Hemforth, Baptiste Couvy-Duchesne, Kevin De Matos, Camille Brianceau, Matthieu Joulot, Tobias Banaschewski, Arun L. W. Bokde, Sylvane Desrivières, Herta Flor, Antoine Grigis, Hugh Garavan, Penny Gowland, Andreas Heinz, Rüdiger Brühl, Jean-Luc Martinot, Marie-Laure Paillère-Martinot, Eric Artiges, Dimitri Papadopoulos, Hervé Lemaître, Tomás Paus, Luise Poustka, Sarah Hohmann, Nathalie Holz, Juliane H. Fröhner, Michael N. Smolka, Nilakshi Vaidya, Henrik Walter, Robert Whelan, Gunter Schumann, Christian Büchel, JB Poline, Bernd Itterman, Vincent Frouin, Alexandre Martin, IMAGEN study group, Claire Cury, Olivier Colliot
2024	—	`conf`	Confidence Intervals Uncovered: Are We Ready for Real-World Medical Imaging AI? MICCAI (10) Evangelia Christodoulou, Annika Reinke, Rola Houhou, Piotr Kalinowski, Selen Erkan, Carole H. Sudre, Ninon Burgos, Sofiène Boutaj, Sophie Loizillon, Maëlys Solal, Nicola Rieke, Veronika Cheplygina, Michela Antonelli, Leon D. Mayer, Minu Dietlinde Tizabi, M. Jorge Cardoso, Amber L. Simpson, Paul F. Jäger, Annette Kopp-Schneider, Gaël Varoquaux, Olivier Colliot, Lena Maier-Hein
2024	J	`jnl`	Confidence intervals uncovered: Are we ready for real-world medical imaging AI? CoRR Evangelia Christodoulou, Annika Reinke, Rola Houhou, Piotr Kalinowski, Selen Erkan, Carole H. Sudre, Ninon Burgos, Sofiène Boutaj, Sophie Loizillon, Maëlys Solal, Nicola Rieke, Veronika Cheplygina, Michela Antonelli, Leon D. Mayer, Minu Dietlinde Tizabi, Manuel Jorge Cardoso, Amber L. Simpson, Paul F. Jäger, Annette Kopp-Schneider, Gaël Varoquaux, Olivier Colliot, Lena Maier-Hein
2024	J	`jnl`	Contrast-enhanced to non-contrast-enhanced image translation to exploit a clinical data warehouse of T1-weighted brain MRI. BMC Medical Imaging Simona Bottani, Elina Thibeau-Sutre, Aurélien Maire, Sebastian Ströer, Didier Dormont, Olivier Colliot, Ninon Burgos
2024	—	`conf`	Detecting Brain Anomalies in Clinical Routine with the β-VAE: Feasibility Study on Age-Related White Matter Hyperintensities. MIDL Sophie Loizillon, Yannick Jacob, Aurélien Maire, Didier Dormont, Olivier Colliot, Ninon Burgos, Apprimage Study Group
2024	J	`jnl`	Evaluation of pseudo-healthy image reconstruction for anomaly detection with deep generative models: Application to brain FDG PET. CoRR Ravi Hassanaly, Camille Brianceau, Maëlys Solal, Olivier Colliot, Ninon Burgos
2024	J	`jnl`	SMILE-UHURA Challenge - Small Vessel Segmentation at Mesoscopic Scale from Ultra-High Resolution 7T Magnetic Resonance Angiograms. CoRR Soumick Chatterjee, Hendrik Mattern, Marc Dörner, Alessandro Sciarra, Florian Dubost, Hannes Schnurre, Rupali Khatun, Chun-Chih Yu, Tsung-Lin Hsieh, Yi-Shan Tsai, Yi-Zeng Fang, Yung-Ching Yang, Juinn-Dar Huang, Marshall Xu, Siyu Liu, Fernanda L. Ribeiro, Saskia Bollmann, Karthikesh Varma Chintalapati, Chethan Radhakrishna, Sri Chandana Hudukula Ram Kumar, Raviteja Sutrave, Abdul Qayyum, Moona Mazher, Imran Razzak, Cristóbal Rodero, Steven Niederren, Fengming Lin, Yan Xia, Jiacheng Wang, Riyu Qiu, Liansheng Wang, Arya Yazdan Panah, Rosana El Jurdi, Guanghui Fu, Janan Arslan, Ghislain Vaillant, Romain Valabrègue, Didier Dormont, Bruno Stankoff, Olivier Colliot, Luisa Vargas, Isai Daniel Chacón, Ioannis Pitsiorlas, Pablo Arbeláez, Maria A. Zuluaga, Stefanie Schreiber, Oliver Speck, Andreas Nürnberger
2023	J	`jnl`	Classic machine learning methods. CoRR Johann Faouzi, Olivier Colliot
2023	J	`jnl`	Confidence intervals for performance estimates in 3D medical image segmentation. CoRR Rosana El Jurdi, Gaël Varoquaux, Olivier Colliot
2023	J	`jnl`	Evaluation of MRI-based machine learning approaches for computer-aided diagnosis of dementia in a clinical data warehouse. Medical Image Anal. Simona Bottani, Ninon Burgos, Aurélien Maire, Dario Saracino, Sebastian Ströer, Didier Dormont, Olivier Colliot
2023	J	`jnl`	Frequency Disentangled Learning for Segmentation of Midbrain Structures from Quantitative Susceptibility Mapping Data. CoRR Guanghui Fu, Gabriel Jimenez, Sophie Loizillon, Lydia Chougar, Didier Dormont, Romain Valabrègue, Ninon Burgos, Stéphane Lehéricy, Daniel Racoceanu, Olivier Colliot
2023	—	`conf`	How Precise are Performance Estimates for Typical Medical Image Segmentation Tasks? ISBI Rosana El Jurdi, Olivier Colliot
2023	B	`conf`	How can data augmentation improve attribution maps for disease subtype explainability. Image Processing Elina Thibeau-Sutre, Jelmer M. Wolterink, Olivier Colliot, Ninon Burgos
2023	B	`conf`	Interpretable automatic detection of incomplete hippocampal inversions using anatomical criteria. Image Processing Lisa Hemforth, Claire Cury, Vincent Frouin, Sylvane Desrivières, Antoine Grigis, Hugh Garavan, Rüdiger Brühl, Jean-Luc Martinot, Marie-Laure Paillère-Martinot, Eric Artiges, Luise Poustka, Sarah Hohmann, Sabina Millenet, Nilakshi Vaidya, Henrik Walter, Robert Whelan, Gunter Schumann, Baptiste Couvy-Duchesne, Olivier Colliot
2023	B	`conf`	Introducing soft topology constraints in deep learning-based segmentation using projected pooling loss. Image Processing Guanghui Fu, Rosana El Jurdi, Lydia Chougar, Didier Dormont, Romain Valabrègue, Stéphane Lehéricy, Olivier Colliot
2023	B	`ed.`	Medical Imaging 2023: Image Processing, San Diego, CA, USA, February 19-23, 2023 Image Processing Olivier Colliot, Ivana Isgum
2023	—	`conf`	Semi-supervised Domain Adaptation for Automatic Quality Control of FLAIR MRIs in a Clinical Data Warehouse. DART@MICCAI Sophie Loizillon, Olivier Colliot, Lydia Chougar, Sebastian Ströer, Yannick Jacob, Aurélien Maire, Didier Dormont, Ninon Burgos
2023	B	`conf`	Simulation based evaluation framework for deep learning unsupervised anomaly detection on brain FDG-PET. Image Processing Ravi Hassanaly, Simona Bottani, Benoît Sauty, Olivier Colliot, Ninon Burgos
2023	B	`conf`	Transfer learning from synthetic to routine clinical data for motion artefact detection in brain T1-weighted MRI. Image Processing Sophie Loizillon, Simona Bottani, Aurélien Maire, Sebastian Ströer, Didier Dormont, Olivier Colliot, Ninon Burgos
2023	—	`conf`	Unsupervised Anomaly Detection in 3D Brain FDG PET: A Benchmark of 17 VAE-Based Approaches. DGM4MICCAI Ravi Hassanaly, Camille Brianceau, Olivier Colliot, Ninon Burgos
2022	B	`conf`	A multimodal variational autoencoder for estimating progression scores from imaging and microRNA data in rare neurodegenerative diseases. Image Processing Virgilio Kmetzsch, Emmanuelle Becker, Dario Saracino, Vincent Anquetil, Daisy Rinaldi, Agnès Camuzat, Thomas Gareau, Isabelle Le Ber, Olivier Colliot
2022	J	`jnl`	Automatic quality control of brain T1-weighted magnetic resonance images for a clinical data warehouse. Medical Image Anal. Simona Bottani, Ninon Burgos, Aurélien Maire, Adam Wild, Sebastian Ströer, Didier Dormont, Olivier Colliot
2022	B	`conf`	Axial multi-layer perceptron architecture for automatic segmentation of choroid plexus in multiple sclerosis. Image Processing Marius Schmidt-Mengin, Vito A. G. Ricigliano, Benedetta Bodini, Emanuele Morena, Annalisa Colombi, Maryem Hamzaoui, Arya Yazdan Panah, Bruno Stankoff, Olivier Colliot
2022	J	`jnl`	ClinicaDL: An open-source deep learning software for reproducible neuroimaging processing. Comput. Methods Programs Biomed. Elina Thibeau-Sutre, Mauricio Diaz-Melo, Ravi Hassanaly, Alexandre Routier, Didier Dormont, Olivier Colliot, Ninon Burgos
2022	J	`jnl`	Disease Progression Score Estimation From Multimodal Imaging and MicroRNA Data Using Supervised Variational Autoencoders. IEEE J. Biomed. Health Informatics Virgilio Kmetzsch, Emmanuelle Becker, Dario Saracino, Daisy Rinaldi, Agnès Camuzat, Isabelle Le Ber, Olivier Colliot
2022	J	`jnl`	Fourier Disentangled Multimodal Prior Knowledge Fusion for Red Nucleus Segmentation in Brain MRI. CoRR Guanghui Fu, Gabriel Jimenez, Sophie Loizillon, Rosana El Jurdi, Lydia Chougar, Didier Dormont, Romain Valabrègue, Ninon Burgos, Stéphane Lehéricy, Daniel Racoceanu, Olivier Colliot
2022	B	`conf`	Homogenization of brain MRI from a clinical data warehouse using contrast-enhanced to non-contrast-enhanced image translation with U-Net derived models. Image Processing Simona Bottani, Elina Thibeau-Sutre, Aurélien Maire, Sebastian Ströer, Didier Dormont, Olivier Colliot, Ninon Burgos
2022	J	`jnl`	How precise are performance estimates for typical medical image segmentation tasks? CoRR Rosana El Jurdi, Olivier Colliot
2022	J	`jnl`	Interpretability of Machine Learning Methods Applied to Neuroimaging. CoRR Elina Thibeau-Sutre, Sasha Collin, Ninon Burgos, Olivier Colliot
2022	—	`conf`	MRI Field Strength Predicts Alzheimer's Disease: a Case Example of Bias in the ADNI Data Set. ISBI Elina Thibeau-Sutre, Baptiste Couvy-Duchesne, Didier Dormont, Olivier Colliot, Ninon Burgos
2022	B	`ed.`	Medical Imaging 2022: Image Processing, San Diego, CA, USA, February 20-24, 2022 / Online, March 21-27, 2022 Image Processing Olivier Colliot, Ivana Isgum, Bennett A. Landman, Murray H. Loew
2022	J	`jnl`	Multilevel Survival Modeling With Structured Penalties for Disease Prediction From Imaging Genetics Data. IEEE J. Biomed. Health Informatics Pascal Lu, Olivier Colliot
2022	J	`jnl`	Reproducibility in machine learning for medical imaging. CoRR Olivier Colliot, Elina Thibeau-Sutre, Ninon Burgos
2021	J	`jnl`	A Diffeomorphic Vector Field Approach to Analyze the Thickness of the Hippocampus From 7 T MRI. IEEE Trans. Biomed. Eng. Alexis Guyot, Ana B. Graciano Fouquier, Emilie Gerardin, Marie Chupin, Joan Alexis Glaunès, Linda Marrakchi-Kacem, Johanne Germain, Claire Boutet, Claire Cury, Lucie Hertz-Pannier, Alexandre Vignaud, Stanley Durrleman, Thomas R. Henry, Pierre-François van de Moortele, Alain Trouvé, Olivier Colliot
2021	B	`conf`	Association and prediction of phenotypic traits from neuroimaging data using a multi-component mixed model excluding the target vertex. Image Processing Baptiste Couvy-Duchesne, Futao Zhang, Kathryn E. Kemper, Julia Sidorenko, Naomi R. Wray, Peter M. Visscher, Jian Yang, Olivier Colliot
2021	J	`jnl`	Automatic quality control of brain T1-weighted magnetic resonance images for a clinical data warehouse. CoRR Simona Bottani, Ninon Burgos, Aurélien Maire, Adam Wild, Sebastian Ströer, Didier Dormont, Olivier Colliot
2021	J	`jnl`	Axial multi-layer perceptron architecture for automatic segmentation of choroid plexus in multiple sclerosis. CoRR Marius Schmidt-Mengin, Vito A. G. Ricigliano, Benedetta Bodini, Emanuele Morena, Annalisa Colombi, Mariem Hamzaoui, Arya Yazdan Panah, Bruno Stankoff, Olivier Colliot
2021	J	`jnl`	Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience Studies. Frontiers Neuroinformatics Alexandre Routier, Ninon Burgos, Mauricio Diaz-Melo, Michael Bacci, Simona Bottani, Omar El-Rifai, Sabrina Fontanella, Pietro Gori, Jérémy Guillon, Alexis Guyot, Ravi Hassanaly, Thomas Jacquemont, Pascal Lu, Arnaud Marcoux, Tristan Moreau, Jorge Samper-González, Marc Teichmann, Elina Thibeau-Sutre, Ghislain Vaillant, Junhao Wen, Adam Wild, Marie Odile Habert, Stanley Durrleman, Olivier Colliot
2021	J	`jnl`	Deep learning for brain disorders: from data processing to disease treatment. Briefings Bioinform. Ninon Burgos, Simona Bottani, Johann Faouzi, Elina Thibeau-Sutre, Olivier Colliot
2021	J	`jnl`	Gaussian Graphical Model Exploration and Selection in High Dimension Low Sample Size Setting. IEEE Trans. Pattern Anal. Mach. Intell. Thomas Lartigue, Simona Bottani, Stephanie Baron, Olivier Colliot, Stanley Durrleman, Stéphanie Allassonnière
2021	J	`jnl`	Predicting the progression of mild cognitive impairment using machine learning: A systematic, quantitative and critical review. Medical Image Anal. Manon Ansart, Stéphane Epelbaum, Giulia Bassignana, Alexandre Bône, Simona Bottani, Tiziana Cattai, Raphaël Couronné, Johann Faouzi, Igor Koval, Maxime Louis, Elina Thibeau-Sutre, Junhao Wen, Adam Wild, Ninon Burgos, Didier Dormont, Olivier Colliot, Stanley Durrleman
2021	J	`jnl`	Reproducible Evaluation of Diffusion MRI Features for Automatic Classification of Patients with Alzheimer's Disease. Neuroinformatics Junhao Wen, Jorge Samper-González, Simona Bottani, Alexandre Routier, Ninon Burgos, Thomas Jacquemont, Sabrina Fontanella, Stanley Durrleman, Stéphane Epelbaum, Anne Bertrand, Olivier Colliot
2020	J	`jnl`	Accuracy of MRI Classification Algorithms in a Tertiary Memory Center Clinical Routine Cohort. CoRR Alexandre Morin, Jorge Samper-González, Anne Bertrand, Sebastian Ströer, Didier Dormont, Aline Mendes, Pierrick Coupé, Jamila Ahdidan, Marcel Lévy, Dalila Samri, Harald Hampel, Bruno Dubois, Marc Teichmann, Stéphane Epelbaum, Olivier Colliot
2020	J	`jnl`	Convolutional neural networks for classification of Alzheimer's disease: Overview and reproducible evaluation. Medical Image Anal. Junhao Wen, Elina Thibeau-Sutre, Mauricio Diaz-Melo, Jorge Samper-González, Alexandre Routier, Simona Bottani, Didier Dormont, Stanley Durrleman, Ninon Burgos, Olivier Colliot
2020	J	`jnl`	Gaussian Graphical Model exploration and selection in high dimension low sample size setting. CoRR Thomas Lartigue, Simona Bottani, Stephanie Baron, Olivier Colliot, Stanley Durrleman, Stéphanie Allassonnière
2020	—	`conf`	Learning Joint Shape and Appearance Representations with Metamorphic Auto-Encoders. MICCAI (1) Alexandre Bône, Paul Vernhet, Olivier Colliot, Stanley Durrleman
2020	J	`jnl`	Learning the spatiotemporal variability in longitudinal shape data sets. Int. J. Comput. Vis. Alexandre Bône, Olivier Colliot, Stanley Durrleman
2020	—	`conf`	Linear Mixed Models Minimise False Positive Rate and Enhance Precision of Mass Univariate Vertex-Wise Analyses of Grey-Matter. ISBI Baptiste Couvy-Duchesne, Futao Zhang, Kathryn E. Kemper, Julia Sidorenko, Naomi R. Wray, Peter M. Visscher, Olivier Colliot, Jian Yang
2020	B	`conf`	Multilevel survival analysis with structured penalties for imaging genetics data. Image Processing Pascal Lu, Olivier Colliot
2020	J	`jnl`	Predicting PET-derived myelin content from multisequence MRI for individual longitudinal analysis in multiple sclerosis. NeuroImage Wen Wei, Emilie Poirion, Benedetta Bodini, Matteo Tonietto, Stanley Durrleman, Olivier Colliot, Bruno Stankoff, Nicholas Ayache
2020	J	`jnl`	The White Matter Module-Hub Network of Semantics Revealed by Semantic Dementia. J. Cogn. Neurosci. Martina Sundqvist, Alexandre Routier, Bruno Dubois, Olivier Colliot, Marc Teichmann
2020	B	`conf`	Visualization approach to assess the robustness of neural networks for medical image classification. Image Processing Elina Thibeau-Sutre, Olivier Colliot, Didier Dormont, Ninon Burgos
2019	—	`conf`	Auto-Encoding Meshes of any Topology with the Current-Splatting and Exponentiation Layers. ICCV Workshops Alexandre Bône, Olivier Colliot, Stanley Durrleman
2019	J	`jnl`	Convolutional Neural Networks for Classification of Alzheimer's Disease: Overview and Reproducible Evaluation. CoRR Junhao Wen, Elina Thibeau-Sutre, Jorge Samper-González, Alexandre Routier, Simona Bottani, Stanley Durrleman, Ninon Burgos, Olivier Colliot
2019	J	`jnl`	Interpretable and Reliable Artificial Intelligence Systems for Brain Diseases. ERCIM News Olivier Colliot
2019	—	`conf`	Learning Low-Dimensional Representations of Shape Data Sets with Diffeomorphic Autoencoders. IPMI Alexandre Bône, Maxime Louis, Olivier Colliot, Stanley Durrleman
2019	J	`jnl`	Predicting PET-derived demyelination from multimodal MRI using sketcher-refiner adversarial training for multiple sclerosis. Medical Image Anal. Wen Wei, Emilie Poirion, Benedetta Bodini, Stanley Durrleman, Nicholas Ayache, Bruno Stankoff, Olivier Colliot
2019	B	`conf`	Reproducible evaluation of methods for predicting progression to Alzheimer's disease from clinical and neuroimaging data. Image Processing Jorge Samper-González, Ninon Burgos, Simona Bottani, Marie Odile Habert, Theodoros Evgeniou, Stéphane Epelbaum, Olivier Colliot
2019	J	`jnl`	Visualization approach to assess the robustness of neural networks for medical image classification. CoRR Elina Thibeau-Sutre, Olivier Colliot, Didier Dormont, Ninon Burgos
2018	J	`jnl`	An Automated Pipeline for the Analysis of PET Data on the Cortical Surface. Frontiers Neuroinformatics Arnaud Marcoux, Ninon Burgos, Anne Bertrand, Marc Teichmann, Alexandre Routier, Junhao Wen, Jorge Samper-González, Simona Bottani, Stanley Durrleman, Marie Odile Habert, Olivier Colliot
2018	—	`conf`	Converting Alzheimer's Disease Map into a Heavyweight Ontology: A Formal Network to Integrate Data. DILS Vincent Henry, Ivan Moszer, Olivier Dameron, Marie-Claude Potier, Martin Hofmann-Apitius, Olivier Colliot
2018	J	`jnl`	Double Diffeomorphism: Combining Morphometry and Structural Connectivity Analysis. IEEE Trans. Medical Imaging Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Alexandre Routier, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, Stanley Durrleman
2018	A*	`conf`	Learning Distributions of Shape Trajectories From Longitudinal Datasets: A Hierarchical Model on a Manifold of Diffeomorphisms. CVPR Alexandre Bône, Olivier Colliot, Stanley Durrleman
2018	—	`conf`	Learning Myelin Content in Multiple Sclerosis from Multimodal MRI Through Adversarial Training. MICCAI (3) Wen Wei, Emilie Poirion, Benedetta Bodini, Stanley Durrleman, Nicholas Ayache, Bruno Stankoff, Olivier Colliot
2018	J	`jnl`	Learning Myelin Content in Multiple Sclerosis from Multimodal MRI through Adversarial Training. CoRR Wen Wei, Emilie Poirion, Benedetta Bodini, Stanley Durrleman, Nicholas Ayache, Bruno Stankoff, Olivier Colliot
2018	J	`jnl`	Learning distributions of shape trajectories from longitudinal datasets: a hierarchical model on a manifold of diffeomorphisms. CoRR Alexandre Bône, Olivier Colliot, Stanley Durrleman
2018	J	`jnl`	Multi-modal brain fingerprinting: A manifold approximation based framework. NeuroImage Kuldeep Kumar, Matthew Toews, Laurent Chauvin, Olivier Colliot, Christian Desrosiers
2018	J	`jnl`	Reproducible evaluation of classification methods in Alzheimer's disease: Framework and application to MRI and PET data. NeuroImage Jorge Samper-González, Ninon Burgos, Simona Bottani, Sabrina Fontanella, Pascal Lu, Arnaud Marcoux, Alexandre Routier, Jérémy Guillon, Michael Bacci, Junhao Wen, Anne Bertrand, Hugo Bertin, Marie Odile Habert, Stanley Durrleman, Theodoros Evgeniou, Olivier Colliot
2018	J	`jnl`	Reproducible evaluation of classification methods in Alzheimer's disease: framework and application to MRI and PET data. CoRR Jorge Samper-González, Ninon Burgos, Simona Bottani, Sabrina Fontanella, Pascal Lu, Arnaud Marcoux, Alexandre Routier, Jérémy Guillon, Michael Bacci, Junhao Wen, Anne Bertrand, Hugo Bertin, Marie Odile Habert, Stanley Durrleman, Theodoros Evgeniou, Olivier Colliot, Alzheimer's Disease Neuroimaging Initiative
2018	J	`jnl`	Reproducible evaluation of diffusion MRI features for automatic classification of patients with Alzheimers disease. CoRR Junhao Wen, Jorge Samper-González, Simona Bottani, Alexandre Routier, Ninon Burgos, Thomas Jacquemont, Sabrina Fontanella, Stanley Durrleman, Stéphane Epelbaum, Anne Bertrand, Olivier Colliot
2017	J	`jnl`	A Bayesian Mixed-Effects Model to Learn Trajectories of Changes from Repeated Manifold-Valued Observations. J. Mach. Learn. Res. Jean-Baptiste Schiratti, Stéphanie Allassonnière, Olivier Colliot, Stanley Durrleman
2017	J	`jnl`	A Bayesian framework for joint morphometry of surface and curve meshes in multi-object complexes. Medical Image Anal. Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, Stanley Durrleman
2017	J	`jnl`	Analysis of anatomical variability using diffeomorphic iterative centroid in patients with Alzheimer's disease. Comput. methods Biomech. Biomed. Eng. Imaging Vis. Claire Cury, Joan Alexis Glaunès, Marie Chupin, Olivier Colliot
2017	J	`jnl`	Fiberprint: A subject fingerprint based on sparse code pooling for white matter fiber analysis. NeuroImage Kuldeep Kumar, Christian Desrosiers, Kaleem Siddiqi, Olivier Colliot, Matthew Toews
2017	—	`conf`	Individual Analysis of Molecular Brain Imaging Data Through Automatic Identification of Abnormality Patterns. CMMI/RAMBO/SWITCH@MICCAI Ninon Burgos, Jorge Samper-González, Anne Bertrand, Marie Odile Habert, Sébastien Ourselin, Stanley Durrleman, M. Jorge Cardoso, Olivier Colliot
2017	J	`jnl`	Modelling Neurodegenerative Diseases from Multimodal Medical Images. ERCIM News Olivier Colliot, Fabrizio de Vico Fallani, Stanley Durrleman
2017	J	`jnl`	Multi-modal analysis of genetically-related subjects using SIFT descriptors in brain MRI. CoRR Kuldeep Kumar, Laurent Chauvin, Matthew Toews, Olivier Colliot, Christian Desrosiers
2017	J	`jnl`	Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging. CoRR Emilie Gerardin, Gaël Chételat, Marie Chupin, Rémi Cuingnet, Béatrice Desgranges, Hosung Kim, Marc Niethammer, Bruno Dubois, Stéphane Lehéricy, Line Garnero, Francis Eustache, Olivier Colliot
2017	—	`conf`	Multilevel Modeling with Structured Penalties for Classification from Imaging Genetics Data. GRAIL/MFCA/MICGen@MICCAI Pascal Lu, Olivier Colliot
2017	—	`conf`	Prediction of Amyloidosis from Neuropsychological and MRI Data for Cost Effective Inclusion of Pre-symptomatic Subjects in Clinical Trials. DLMIA/ML-CDS@MICCAI Manon Ansart, Stéphane Epelbaum, Geoffroy Gagliardi, Olivier Colliot, Didier Dormont, Bruno Dubois, Harald Hampel, Stanley Durrleman
2017	—	`conf`	Prediction of the Progression of Subcortical Brain Structures in Alzheimer's Disease from Baseline. GRAIL/MFCA/MICGen@MICCAI Alexandre Bône, Maxime Louis, Alexandre Routier, Jorge Samper-González, Michael Bacci, Benjamin Charlier, Olivier Colliot, Stanley Durrleman
2017	J	`jnl`	Prediction of the progression of subcortical brain structures in Alzheimer's disease from baseline. CoRR Alexandre Bône, Maxime Louis, Alexandre Routier, Jorge Samper-González, Michael Bacci, Benjamin Charlier, Olivier Colliot, Stanley Durrleman
2017	—	`conf`	Statistical Learning of Spatiotemporal Patterns from Longitudinal Manifold-Valued Networks. MICCAI (1) Igor Koval, Jean-Baptiste Schiratti, Alexandre Routier, Michael Bacci, Olivier Colliot, Stéphanie Allassonnière, Stanley Durrleman
2017	J	`jnl`	Statistical learning of spatiotemporal patterns from longitudinal manifold-valued networks. CoRR Igor Koval, Jean-Baptiste Schiratti, Alexandre Routier, Michael Bacci, Olivier Colliot, Stéphanie Allassonnière, Stanley Durrleman
2017	—	`conf`	White Matter Fiber Segmentation Using Functional Varifolds. GRAIL/MFCA/MICGen@MICCAI Kuldeep Kumar, Pietro Gori, Benjamin Charlier, Stanley Durrleman, Olivier Colliot, Christian Desrosiers
2017	J	`jnl`	White Matter Fiber Segmentation Using Functional Varifolds. CoRR Kuldeep Kumar, Pietro Gori, Benjamin Charlier, Stanley Durrleman, Olivier Colliot, Christian Desrosiers
2017	J	`jnl`	Yet Another ADNI Machine Learning Paper? Paving The Way Towards Fully-reproducible Research on Classification of Alzheimer's Disease. CoRR Jorge Samper-González, Ninon Burgos, Sabrina Fontanella, Hugo Bertin, Marie Odile Habert, Stanley Durrleman, Theodoros Evgeniou, Olivier Colliot
2017	—	`conf`	Yet Another ADNI Machine Learning Paper? Paving the Way Towards Fully-Reproducible Research on Classification of Alzheimer's Disease. MLMI@MICCAI Jorge Samper-González, Ninon Burgos, Sabrina Fontanella, Hugo Bertin, Marie Odile Habert, Stanley Durrleman, Theodoros Evgeniou, Olivier Colliot
2016	J	`jnl`	CATI: A Large Distributed Infrastructure for the Neuroimaging of Cohorts. Neuroinformatics Grégory Operto, Marie Chupin, Bénédicte Batrancourt, Marie Odile Habert, Olivier Colliot, Habib Benali, Cyril Poupon, Catherine Champseix, Christine Delmaire, Marie Sullivan, Denis Rivière, Mélanie Pélégrini-Issac, Vincent Perlbarg, Régine Trébossen, Michel Bottlaender, Vincent Frouin, Antoine Grigis, Dimitri Papadopoulos-Orfanos, Hugo Dary, Ludovic Fillon, Chabha Azouani, Ali Bouyahia, Clara Fischer, Lydie Edward, Mathilde Bouin, Urielle Thoprakarn, Jinpeng Li, Leila Makkaoui, Sylvain Poret, Carole Dufouil, Vincent Bouteloup, Gaël Chételat, Bruno Dubois, Stéphane Lehéricy, Jean-François Mangin, Yann Cointepas
2016	Misc	`conf`	Intra-subject multi-slab registration: Application to hippocampal ultra-high resolution imaging at 7T. ATSIP Linda Marrakchi-Kacem, Alexandre Vignaud, Julien Sein, Johanne Germain, Thomas R. Henry, Cyril Poupon, Lucie Hertz-Pannier, Stéphane Lehéricy, Olivier Colliot, Pierre-François van de Moortele, Marie Chupin
2016	J	`jnl`	Parsimonious Approximation of Streamline Trajectories in White Matter Fiber Bundles. IEEE Trans. Medical Imaging Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Fabrizio de Vico Fallani, Mario Chavez, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, Stanley Durrleman
2016	J	`jnl`	Robust imaging of hippocampal inner structure at 7T: in vivo acquisition protocol and methodological choices. CoRR Linda Marrakchi-Kacem, Alexandre Vignaud, Julien Sein, Johanne Germain, Thomas R. Henry, Cyril Poupon, Lucie Hertz-Pannier, Stéphane Lehéricy, Olivier Colliot, Pierre-François van de Moortele, Marie Chupin
2015	—	`conf`	A Mixed-Effects Model with Time Reparametrization for Longitudinal Univariate Manifold-Valued Data. IPMI Jean-Baptiste Schiratti, Stéphanie Allassonnière, Alexandre Routier, Olivier Colliot, Stanley Durrleman
2015	—	`conf`	Joint Morphometry of Fiber Tracts and Gray Matter Structures Using Double Diffeomorphisms. IPMI Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Alexandre Routier, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, Stanley Durrleman
2015	—	`conf`	Learning spatiotemporal trajectories from manifold-valued longitudinal data. NIPS Jean-Baptiste Schiratti, Stéphanie Allassonnière, Olivier Colliot, Stanley Durrleman
2014	—	`conf`	A Prototype Representation to Approximate White Matter Bundles with Weighted Currents. MICCAI (3) Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Fabrizio de Vico Fallani, Mario Chavez, Sophie Lecomte, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, Stanley Durrleman
2014	—	`conf`	Fast Template-based Shape Analysis Using Diffeomorphic Iterative Centroid. MIUA Claire Cury, Joan Alexis Glaunès, Marie Chupin, Olivier Colliot
2014	J	`jnl`	Structural connectivity differences in left and right temporal lobe epilepsy. NeuroImage Pierre Besson, Vera Dinkelacker, Romain Valabrègue, Lionel Thivard, Xavier Leclerc, Michel Baulac, Daniela Sammler, Olivier Colliot, Stéphane Lehéricy, Séverine Samson, Sophie Dupont
2013	—	`conf`	Bayesian Atlas Estimation for the Variability Analysis of Shape Complexes. MICCAI (1) Pietro Gori, Olivier Colliot, Yulia Worbe, Linda Marrakchi-Kacem, Sophie Lecomte, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, Stanley Durrleman
2013	J	`jnl`	Spatial and Anatomical Regularization of SVM: A General Framework for Neuroimaging Data. IEEE Trans. Pattern Anal. Mach. Intell. Rémi Cuingnet, Joan Alexis Glaunès, Marie Chupin, Habib Benali, Olivier Colliot
2013	—	`conf`	Template Estimation for Large Database: A Diffeomorphic Iterative Centroid Method Using Currents. GSI Claire Cury, Joan Alexis Glaunès, Olivier Colliot
2012	J	`jnl`	Automatic hippocampal segmentation in temporal lobe epilepsy: Impact of developmental abnormalities. NeuroImage Hosung Kim, Marie Chupin, Olivier Colliot, Boris C. Bernhardt, Neda Bernasconi, Andrea Bernasconi
2012	B	`conf`	Automatic segmentation of white matter hyperintensities robust to multicentre acquisition and pathological variability. Image Processing Thomas Samaille, Olivier Colliot, Rémi Cuingnet, Eric Jouvent, Hugues Chabriat, Didier Dormont, Marie Chupin
2011	—	`conf`	Anatomical Regularization on Statistical Manifolds for the Classification of Patients with Alzheimer's Disease. MLMI Rémi Cuingnet, Joan Alexis Glaunès, Marie Chupin, Habib Benali, Olivier Colliot
2011	J	`jnl`	Automatic classification of patients with Alzheimer's disease from structural MRI: A comparison of ten methods using the ADNI database. NeuroImage Rémi Cuingnet, Emilie Gerardin, Jérôme Tessieras, Guillaume Auzias, Stéphane Lehéricy, Marie Odile Habert, Marie Chupin, Habib Benali, Olivier Colliot
2011	—	`conf`	Automatic segmentation of age-related white matter changes on flair images: Method and multicentre validation. ISBI Thomas Samaille, Olivier Colliot, Didier Dormont, Marie Chupin
2011	J	`jnl`	Diffeomorphic Brain Registration Under Exhaustive Sulcal Constraints. IEEE Trans. Medical Imaging Guillaume Auzias, Olivier Colliot, Joan Alexis Glaunès, Matthieu Perrot, Jean-François Mangin, Alain Trouvé, Sylvain Baillet
2011	J	`jnl`	Spatial regularization of SVM for the detection of diffusion alterations associated with stroke outcome. Medical Image Anal. Rémi Cuingnet, Charlotte Rosso, Marie Chupin, Stéphane Lehéricy, Didier Dormont, Habib Benali, Yves Samson, Olivier Colliot
2011	—	`conf`	T 1 Mapping, AIF and Pharmacokinetic Parameter Extraction from Dynamic Contrast Enhancement MRI Data. MBIA Gilad Liberman, Yoram Louzoun, Olivier Colliot, Dafna Ben-Bashat
2010	J	`jnl`	Hommage à Line Garnero. La pluridisciplinarité au cœur. Traitement du Signal Sylvain Baillet, Jean Brunol, Pierre Chavel, Olivier Colliot, Mireille Cuniot-Ponsard, Didier Dormont, Philippe Lalanne, Jacques Martinerie, Bernard Renault, Catherine Tallon-Baudry, Bernard Zalc
2010	—	`conf`	Spatial and anatomical regularization of SVM for brain image analysis. NIPS Rémi Cuingnet, Marie Chupin, Habib Benali, Olivier Colliot
2010	—	`conf`	Spatial prior in SVM-based classification of brain images. Computer-Aided Diagnosis Rémi Cuingnet, Marie Chupin, Habib Benali, Olivier Colliot
2010	—	`conf`	Spatially Regularized SVM for the Detection of Brain Areas Associated with Stroke Outcome. MICCAI (1) Rémi Cuingnet, Charlotte Rosso, Stéphane Lehéricy, Didier Dormont, Habib Benali, Yves Samson, Olivier Colliot
2009	J	`jnl`	3D brain tumor segmentation in MRI using fuzzy classification, symmetry analysis and spatially constrained deformable models. Fuzzy Sets Syst. Hassan Khotanlou, Olivier Colliot, Jamal Atif, Isabelle Bloch
2009	J	`jnl`	Automatic segmentation of the hippocampus and the amygdala driven by hybrid constraints: Method and validation. NeuroImage Marie Chupin, Alexander Hammers, Rebecca S. N. Liu, Olivier Colliot, J. Burdett, Éric Bardinet, John S. Duncan, Line Garnero, Louis Lemieux
2009	J	`jnl`	Can voxel based morphometry, manual segmentation and automated segmentation equally detect hippocampal volume differences in acute depression? NeuroImage Loretxu Bergouignan, Marie Chupin, Yvonne Czechowska, Serge Kinkingnéhun, Cédric Lemogne, Guillaume Le Bastard, Martin D. Lepage, Line Garnero, Olivier Colliot, Philippe Fossati
2009	—	`conf`	DISCO: A Coherent Diffeomorphic Framework for Brain Registration under Exhaustive Sulcal Constraints. MICCAI (1) Guillaume Auzias, Joan Alexis Glaunès, Olivier Colliot, Matthieu Perrot, Jean-François Mangin, Alain Trouvé, Sylvain Baillet
2009	J	`jnl`	Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging. NeuroImage Emilie Gerardin, Gaël Chételat, Marie Chupin, Rémi Cuingnet, Béatrice Desgranges, Hosung Kim, Marc Niethammer, Bruno Dubois, Stéphane Lehéricy, Line Garnero, Francis Eustache, Olivier Colliot
2008	—	`conf`	Automatic detection of subtle focal cortical dysplasia using surface-based features on MRI. ISBI Pierre Besson, Olivier Colliot, Alan C. Evans, Andrea Bernasconi
2008	—	`conf`	Fully automatic hippocampus segmentation discriminates between early Alzheimer's disease and normal aging. ISBI Marie Chupin, Gaël Chételat, Louis Lemieux, Bruno Dubois, Line Garnero, Habib Benali, Francis Eustache, Stéphane Lehéricy, Béatrice Desgranges, Olivier Colliot
2008	—	`conf`	Identification of Atrophy Patterns in Alzheimer's Disease Based on SVM Feature Selection and Anatomical Parcellation. MIAR Lilia Mesrob, Benoît Magnin, Olivier Colliot, Marie Sarazin, Valérie Hahn-Barma, Bruno Dubois, Patrick Gallinari, Stéphane Lehéricy, Serge Kinkingnéhun, Habib Benali
2008	—	`conf`	Multi-scale diffeomorphic cortical registration under manifold sulcal constraints. ISBI Guillaume Auzias, Joan Alexis Glaunès, Arnaud Cachia, Pascal Cathier, Éric Bardinet, Olivier Colliot, Jean-François Mangin, Alain Trouvé, Sylvain Baillet
2008	—	`conf`	Surface-Based Texture and Morphological Analysis Detects Subtle Cortical Dysplasia. MICCAI (1) Pierre Besson, Neda Bernasconi, Olivier Colliot, Alan C. Evans, Andrea Bernasconi
2008	—	`conf`	Surface-Based Vector Analysis Using Heat Equation Interpolation: A New Approach to Quantify Local Hippocampal Volume Changes. MICCAI (1) Hosung Kim, Pierre Besson, Olivier Colliot, Andrea Bernasconi, Neda Bernasconi
2008	J	`jnl`	Using anatomical knowledge expressed as fuzzy constraints to segment the heart in CT images. Pattern Recognit. A. Moreno, Celina Maki Takemura, Olivier Colliot, Oscar Camara, Isabelle Bloch
2007	J	`jnl`	Explicit Incorporation of Prior Anatomical Information Into a Nonrigid Registration of Thoracic and Abdominal CT and 18-FDG Whole-Body Emission PET Images. IEEE Trans. Medical Imaging Oscar Camara, Gaspar Delso, Olivier Colliot, Antonio Moreno-Ingelmo, Isabelle Bloch
2007	—	`conf`	Fully Automatic Segmentation of the Hippocampus and the Amygdala from MRI Using Hybrid Prior Knowledge. MICCAI (1) Marie Chupin, Alexander Hammers, Éric Bardinet, Olivier Colliot, Rebecca S. N. Liu, John S. Duncan, Line Garnero, Louis Lemieux
2006	—	`conf`	Improved segmentation of focal cortical dysplasia lesions on MRI using expansion towards cortical boundaries. ISBI Olivier Colliot, Tommaso Mansi, Pierre Besson, Neda Bernasconi, Andrea Bernasconi
2006	J	`jnl`	Individual voxel-based analysis of gray matter in focal cortical dysplasia. NeuroImage Olivier Colliot, Neda Bernasconi, Najmeh Khalili-Mahani, Samson B. Antel, Véronique Naessens, Andrea Bernasconi
2006	J	`jnl`	Integration of fuzzy spatial relations in deformable models - Application to brain MRI segmentation. Pattern Recognit. Olivier Colliot, Oscar Camara, Isabelle Bloch
2006	J	`jnl`	On the Ternary Spatial Relation "Between". IEEE Trans. Syst. Man Cybern. Part B Isabelle Bloch, Olivier Colliot, Roberto Marcondes Cesar Junior
2006	J	`jnl`	Segmentation of focal cortical dysplasia lesions on MRI using level set evolution. NeuroImage Olivier Colliot, Tommaso Mansi, Neda Bernasconi, V. Naessens, D. Klironomos, Andrea Bernasconi
2005	—	`conf`	3D Brain Tumor Segmentation Using Fuzzy Classification and Deformable Models. WILF Hassan Khotanlou, Jamal Atif, Olivier Colliot, Isabelle Bloch
2005	J	`jnl`	Fusion of spatial relationships for guiding recognition, example of brain structure recognition in 3D MRI. Pattern Recognit. Lett. Isabelle Bloch, Olivier Colliot, Oscar Camara, Thierry Géraud
2005	C	`conf`	Mathematical Modeling of the Relationship "between" Based On Morphological Operators. ISMM Isabelle Bloch, Olivier Colliot, Roberto M. Cesar
2005	A	`conf`	Segmentation of Focal Cortical Dysplasia Lesions Using a Feature-Based Level Set. MICCAI Olivier Colliot, Tommaso Mansi, Neda Bernasconi, V. Naessens, D. Klironomos, Andrea Bernasconi
2004	J	`jnl`	Approximate reflectional symmetries of fuzzy objects with an application in model-based object recognition. Fuzzy Sets Syst. Olivier Colliot, Alexander V. Tuzikov, Roberto M. Cesar, Isabelle Bloch
2004	J	`jnl`	Computational modeling of thoracic and abdominal anatomy using spatial relationships for image segmentation. Real Time Imaging Oscar Camara, Olivier Colliot, Isabelle Bloch
2004	B	`conf`	Description of brain internal structures by means of spatial relations for MR image segmentation. Image Processing Olivier Colliot, Oscar Camara, Remi Dewynter, Isabelle Bloch
2003	J	`jnl`	Evaluation of the symmetry plane in 3D MR brain images. Pattern Recognit. Lett. Alexander V. Tuzikov, Olivier Colliot, Isabelle Bloch
2003	—	`—`	Représentation, évaluation et utilisation de relations spatiales pour l'interprétation d'images. Application à la reconnaissance de structures anatomiques en imagerie médicale. (Representation, evaluation and use of spatial relations for image understanding. Application to anatomical structures recognition in medical imaging). Olivier Colliot
2002	—	`conf`	Brain Symmetry Plane Computation in MR Images Using Inertia Axes and Optimization. ICPR (1) Alexander V. Tuzikov, Olivier Colliot, Isabelle Bloch