Oliver Kohlbacher

143 papers A 1B 6C 3Misc 4Journal 85Unranked 37
YearRankTypeTitle / Venue / Authors
2024 J jnl
CLAUDIO: automated structural analysis of cross-linking data.
Bioinform.
Alexander Röhl, Eugen Netz, Oliver Kohlbacher, Hadeer Elhabashy
2023 — conf
Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities.
CoRDI
Nils Hoffmann, Irena Maus, Sebastian Beier, Peter Belmann, Jan Krüger, Andreas Tauch, Alexander Goesmann, Roland Eils, Peer Bork, Oliver Kohlbacher, Ursula Kummer, Rolf Backofen, Ivo Buchhalter, Alexander Sczyrba
2023 J jnl
The personalized cancer network explorer (PeCaX) as a visual analytics tool to support molecular tumor boards.
BMC Bioinform.
Mirjam Figaschewski, Bilge Sürün, Thorsten Tiede, Oliver Kohlbacher
2023 J jnl
UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis.
J. Cheminformatics
Eleftheria Kontou, Axel Walter, Oliver Alka, Julianus Pfeuffer, Timo Sachsenberg, Omkar S. Mohite, Matin Nuhamunada, Oliver Kohlbacher, Tilmann Weber
2022 J jnl
Bringing the Algorithms to the Data - Secure Distributed Medical Analytics using the Personal Health Train (PHT-meDIC).
CoRR
Marius de Arruda Botelho Herr, Michael Graf, Peter Placzek, Florian König, Felix Bötte, Tyra Stickel, David Hieber, Lukas Zimmermann, Michael Slupina, Christopher Mohr, Stephanie Biergans, Mete Akgün, Nico Pfeifer, Oliver Kohlbacher
2022 J jnl
De novo identification of maximally deregulated subnetworks based on multi-omics data with DeRegNet.
BMC Bioinform.
Sebastian Winkler, Ivana Winkler, Mirjam Figaschewski, Thorsten Tiede, Alfred Nordheim, Oliver Kohlbacher
2022 J jnl
Efficient privacy-preserving whole-genome variant queries.
Bioinform.
Mete Akgün, Nico Pfeifer, Oliver Kohlbacher
2022 — conf
The COVID-19 Data Exchange Platform of the German University Medicine.
MIE
Hans-Ulrich Prokosch, Thomas Bahls, Martin Bialke, Jürgen Eils, Christian Fegeler, Julian Gründner, Birger Haarbrandt, Christopher Hampf, Wolfgang Hoffmann, Hauke Hund, Marvin O. Kampf, Lorenz A. Kapsner, Piotr Kasprzak, Oliver Kohlbacher, Dagmar Krefting, Jonathan Mang, Michael Marschollek, Sebastian Mate, Armin Müller, Fabian Prasser, Julian Sass, Sebastian C. Semler, Holger Stenzhorn, Sylvia Thun, Sven Zenker, Roland Eils
2021 J jnl
Identifying disease-causing mutations with privacy protection.
Bioinform.
Mete Akgün, Ali Burak Ünal, Bekir Ergüner, Nico Pfeifer, Oliver Kohlbacher
2020 J jnl
ClinVAP: a reporting strategy from variants to therapeutic options.
Bioinform.
Bilge Sürün, Charlotta P. I. Schärfe, Mathew R. Divine, Julian Heinrich, Nora C. Toussaint, Lukas Zimmermann, Janina Beha, Oliver Kohlbacher
2020 J jnl
Distributed Analytics on Sensitive Medical Data: The Personal Health Train.
Data Intell.
Oya Beyan, Ananya Choudhury, Johan van Soest, Oliver Kohlbacher, Lukas Zimmermann, Holger Stenzhorn, Md. Rezaul Karim, Michel Dumontier, Stefan Decker, Luiz Olavo Bonino da Silva Santos, Andre Dekker
2020 J jnl
Enabling ad-hoc reuse of private data repositories through schema extraction.
J. Biomed. Semant.
Lars Christoph Gleim, Md. Rezaul Karim, Lukas Zimmermann, Oliver Kohlbacher, Holger Stenzhorn, Stefan Decker, Oya Beyan
2019 B conf
BOOTABLE: Bioinformatics Benchmark Tool Suite.
CCGRID
Maximilian Hanussek, Felix Bartusch, Jens Krüger, Oliver Kohlbacher
2019 Misc conf
Biological Network Knowledge in Molecular Tumor Boards.
AMIA
Thorsten Tiede, Oliver Kohlbacher
2019 J jnl
ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification.
Bioinform.
Lara Schneider, Tim Kehl, Kristina Thedinga, Nadja Liddy Grammes, Christina Backes, Christopher Mohr, Benjamin Schubert, Kerstin Lenhof, Nico Gerstner, Andreas Daniel Hartkopf, Markus Wallwiener, Oliver Kohlbacher, Andreas Keller, Eckart Meese, Norbert M. Graf, Hans-Peter Lenhof
2019 B conf
Reproducible Scientific Workflows for High Performance and Cloud Computing.
CCGRID
Felix Bartusch, Maximilian Hanussek, Jens Krüger, Oliver Kohlbacher
2019 J jnl
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR.
F1000Research
Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Björn A. Grüning, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz, Malvika Sharan, Andreas Tauch, Ulrike Trojahn, Björn Usadel, Oliver Kohlbacher
2018 — conf
A distributed analytics platform to execute FHIR based phenotyping algorithms.
SWAT4LS
Md. Rezaul Karim, Binh-Phi Nguyen, Lukas Zimmermann, Toralf Kirsten, Matthias Löbe, Frank A. Meineke, Holger Stenzhorn, Oliver Kohlbacher, Stefan Decker, Oya Beyan
2018 — conf
Interactive Visualization for Large-Scale Multi-factorial Research Designs.
DILS
Andreas Friedrich, Luis de la Garza, Oliver Kohlbacher, Sven Nahnsen
2018 J jnl
Population-specific design of de-immunized protein biotherapeutics.
PLoS Comput. Biol.
Benjamin Schubert, Charlotta Schärfe, Pierre Dönnes, Thomas A. Hopf, Debora S. Marks, Oliver Kohlbacher
2018 — conf
User-Driven Development of a Novel Molecular Tumor Board Support Tool.
DILS
Marc Halfmann, Holger Stenzhorn, Peter Gerjets, Oliver Kohlbacher, Uwe Oestermeier
2017 — conf
Efficient Mass Spectra Prediction through Container Orchestration with a Scientific Workflow.
IWSG
Maximilian Hanussek, Felix Bartusch, Jens Krüger, Oliver Kohlbacher
2017 J jnl
From the desktop to the grid and cloud: conversion of KNIME workflows to WS-PGRADE.
PeerJ Prepr.
Luis de la Garza, Fabian Aicheler, Oliver Kohlbacher
2017 J jnl
ImmunoNodes - graphical development of complex immunoinformatics workflows.
BMC Bioinform.
Benjamin Schubert, Luis de la Garza, Christopher Mohr, Mathias Walzer, Oliver Kohlbacher
2017 J jnl
Population-specific design of de-immunized protein biotherapeutics.
CoRR
Benjamin Schubert, Charlotta Schärfe, Pierre Dönnes, Thomas A. Hopf, Debora S. Marks, Oliver Kohlbacher
2017 J jnl
SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria.
Bioinform.
Marc G. Chevrette, Fabian Aicheler, Oliver Kohlbacher, Cameron R. Currie, Marnix H. Medema
2017 — conf
Scaling home automation to public buildings: A distributed multiuser setup for OpenHAB 2.
GIoTS
Florian Heimgaertner, Stefan Hettich, Oliver Kohlbacher, Michael Menth
2017 J jnl
The future of metabolomics in ELIXIR.
F1000Research
Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jiménez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck
2017 J jnl
qPortal - A science gateway for biomedical applications.
PeerJ Prepr.
Christopher Mohr, Andreas Friedrich, David Wojnar, Erhan Kenar, Aydin Can Polatkan, Marius Cosmin Codrea, Stefan Czemmel, Oliver Kohlbacher, Sven Nahnsen
2016 J jnl
BALL-SNPgp - from genetic variants toward computational diagnostics.
Bioinform.
Sabine C. Mueller, Christina Backes, Alexander Greß, Nina Baumgarten, Olga V. Kalinina, Andreas Moll, Oliver Kohlbacher, Eckart Meese, Andreas Keller
2016 J jnl
Containerization and wrapping of a mass spectra prediction workflow.
PeerJ Prepr.
Jens Krüger, Oliver Kohlbacher
2016 J jnl
FRED 2: an immunoinformatics framework for Python.
Bioinform.
Benjamin Schubert, Mathias Walzer, Hans-Philipp Brachvogel, András Szolek, Christopher Mohr, Oliver Kohlbacher
2016 — conf
From the Desktop to the Grid and Cloud: Conversion of KNIME Workflows to WS-PGRADE.
IWSG
Luis de la Garza, Fabian Aicheler, Oliver Kohlbacher
2016 J jnl
From the desktop to the grid: scalable bioinformatics via workflow conversion.
BMC Bioinform.
Luis de la Garza, Johannes Veit, András Szolek, Marc Röttig, Stephan Aiche, Sandra Gesing, Knut Reinert, Oliver Kohlbacher
2016 J jnl
Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics.
PLoS Comput. Biol.
Lisa M. Breckels, Sean B. Holden, David Wojnar, Claire M. Mulvey, Andy Christoforou, Arnoud Groen, Matthew W. B. Trotter, Oliver Kohlbacher, Kathryn S. Lilley, Laurent Gatto
2015 J jnl
Computational Mass Spectrometry (Dagstuhl Seminar 15351).
Dagstuhl Reports
Rudolf Aebersold, Oliver Kohlbacher, Olga Vitek
2015 J jnl
EpiToolKit - a web-based workbench for vaccine design.
Bioinform.
Benjamin Schubert, Hans-Philipp Brachvogel, Christopher Jürges, Oliver Kohlbacher
2015 J jnl
Network-based interactive navigation and analysis of large biological datasets.
it Inf. Technol.
Andreas Gerasch, Jan Küntzer, Peter Niermann, Daniel Stöckel, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof
2015 J jnl
Protein (multi-)location prediction: utilizing interdependencies via a generative model.
Bioinform.
Ramanuja Simha, Sebastian Briesemeister, Oliver Kohlbacher, Hagit Shatkay
2015 J jnl
ballaxy: web services for structural bioinformatics.
Bioinform.
Anna Katharina Hildebrandt, Daniel Stöckel, Nina M. Fischer, Luis de la Garza, Jens Krüger, Stefan Nickels, Marc Röttig, Charlotta Schärfe, Marcel Schumann, Philipp Thiel, Hans-Peter Lenhof, Oliver Kohlbacher, Andreas Hildebrandt
2014 J jnl
Blocked Inverted Indices for Exact Clustering of Large Chemical Spaces.
J. Chem. Inf. Model.
Philipp Thiel, Lisa Sach-Peltason, Christian Ottmann, Oliver Kohlbacher
2014 J jnl
OptiType: precision HLA typing from next-generation sequencing data.
Bioinform.
András Szolek, Benjamin Schubert, Christopher Mohr, Marc Sturm, Magdalena Feldhahn, Oliver Kohlbacher
2014 B conf
Rebuilding KEGG Maps: Algorithms and Benefits.
PacificVis
Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher
2013 Misc conf
A Statistical Comparison of SimTandem with State-of-the-Art Peptide Identification Tools.
PACBB
Jirí Novák, Timo Sachsenberg, David Hoksza, Tomás Skopal, Oliver Kohlbacher
2013 J jnl
Computational Mass Spectrometry (Dagstuhl Seminar 13491).
Dagstuhl Reports
Ruedi Aebersold, Oliver Kohlbacher, Olga Vitek
2013 J jnl
Deterministic clustering of the available chemical space.
J. Cheminformatics
Philipp Thiel, Lisa Peltason, Christian Ottmann, Oliver Kohlbacher
2013 J jnl
Development of a pharmacorphore model for pharmacological chaperones targeting mutant trafficking-deficient CNG channels.
J. Cheminformatics
Charlotta Schärfe, Joachim Taeger, Peggy Reuter, Nina M. Fischer, Jens Krüger, Bernd Wissinger, Oliver Kohlbacher
2013 — conf
From the Desktop to the Grid: conversion of KNIME Workflows to gUSE.
IWSG
Luis de la Garza, Jens Krüger, Charlotta Schärfe, Marc Röttig, Stephan Aiche, Knut Reinert, Oliver Kohlbacher
2013 — conf
Multivariate Networks in the Life Sciences.
Multivariate Network Visualization
Oliver Kohlbacher, Falk Schreiber, Matthew O. Ward
2013 — conf
Novel Visual Metaphors for Multivariate Networks.
Multivariate Network Visualization
Jonathan C. Roberts, Jing Yang, Oliver Kohlbacher, Matthew O. Ward, Michelle X. Zhou
2013 J jnl
On Comparison of SimTandem with State-of-the-Art Peptide Identification Tools, Efficiency of Precursor Mass Filter and Dealing with Variable Modifications.
J. Integr. Bioinform.
Jirí Novák, Timo Sachsenberg, David Hoksza, Tomás Skopal, Oliver Kohlbacher
2013 J jnl
The MoSGrid - e-science gateway: molecular simulations in a distributed computing environment.
J. Cheminformatics
Lars Packschies, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Martin Kruse, Ulrich Lang, Ralph Müller-Pfefferkorn, Patrick Schäfer, Tobias Schlemmer, Thomas Steinke, Klaus-Dieter Warzecha, Andreas Zink
2012 J jnl
A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics.
J. Grid Comput.
Sandra Gesing, Richard Grunzke, Jens Krüger, Georg Birkenheuer, Martin Wewior, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Sonja Herres-Pawlis, Sebastian Breuers, Ákos Balaskó, Miklos Kozlovszky, Anna Szikszay Fabri, Lars Packschies, Péter Kacsuk, Dirk Blunk, Thomas Steinke, André Brinkmann, Gregor Fels, Ralph Müller-Pfefferkorn, René Jäkel, Oliver Kohlbacher
2012 J jnl
CADDSuite - a workflow-enabled suite of open-source tools for drug discovery.
J. Cheminformatics
Oliver Kohlbacher
2012 J jnl
In silico design of targeted SRM-based experiments.
BMC Bioinform.
Sven Nahnsen, Oliver Kohlbacher
2012 J jnl
MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment.
J. Cheminformatics
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
2012 — conf
Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway.
HealthGrid
Sonja Herres-Pawlis, Georg Birkenheuer, André Brinkmann, Sandra Gesing, Richard Grunzke, René Jäkel, Oliver Kohlbacher, Jens Krüger, Ines dos Santos Vieira
2012 — conf
miHA-match: computational detection of tissue-specific minor histocompatibility antigens.
BCB
Magdalena Feldhahn, Karin Schilbach, Pierre Dönnes, Hans-Georg Rammensee, Benjamin Schubert, Oliver Kohlbacher
2011 J jnl
A framework and workflow system for virtual screening and molecular docking.
J. Cheminformatics
Marcel Schumann, Marc Röttig, Nina M. Fischer, Oliver Kohlbacher
2011 — conf
Granular Security for a Science Gateway in Structural Bioinformatics.
IWSG-Life
Sandra Gesing, Richard Grunzke, Ákos Balaskó, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sonja Herres-Pawlis, Péter Kacsuk, Miklos Kozlovszky, Jens Krüger, Lars Packschies, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Thomas Steinke, Anna Szikszay Fabri, Martin Wewior, Ralph Müller-Pfefferkorn, Oliver Kohlbacher
2011 J jnl
MoSGrid - a molecular simulation grid as a new tool in computational chemistry, biology and material science.
J. Cheminformatics
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
2011 J jnl
Molecular simulation grid.
J. Cheminformatics
Jens Krüger, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Oliver Kohlbacher, Nico Kruber, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Sonja Herres-Pawlis, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
2011 J jnl
NRPSpredictor2 - a web server for predicting NRPS adenylation domain specificity.
Nucleic Acids Res.
Marc Röttig, Marnix H. Medema, Kai Blin, Tilmann Weber, Christian Rausch, Oliver Kohlbacher
2011 J jnl
POPISK: T-cell reactivity prediction using support vector machines and string kernels.
BMC Bioinform.
Chun-Wei Tung, Matthias Ziehm, Andreas Kämper, Oliver Kohlbacher, Shinn-Ying Ho
2011 J jnl
Special Issue: Portals for life sciences - Providing intuitive access to bioinformatic tools.
Concurr. Comput. Pract. Exp.
Sandra Gesing, Jano I. van Hemert, Péter Kacsuk, Oliver Kohlbacher
2011 — conf
T-cell epitope prediction based on self-tolerance.
BCB
Nora C. Toussaint, Magdalena Feldhahn, Matthias Ziehm, Stefan Stevanovic, Oliver Kohlbacher
2010 J jnl
BALL - biochemical algorithms library 1.3.
BMC Bioinform.
Andreas Hildebrandt, Anna Katharina Dehof, Alexander Rurainski, Andreas Bertsch, Marcel Schumann, Nora C. Toussaint, Andreas Moll, Daniel Stöckel, Stefan Nickels, Sabine C. Mueller, Hans-Peter Lenhof, Oliver Kohlbacher
2010 J jnl
Combining Structure and Sequence Information Allows Automated Prediction of Substrate Specificities within Enzyme Families.
PLoS Comput. Biol.
Marc Röttig, Christian Rausch, Oliver Kohlbacher
2010 J jnl
Exploiting physico-chemical properties in string kernels.
BMC Bioinform.
Nora C. Toussaint, Christian Widmer, Oliver Kohlbacher, Gunnar Rätsch
2010 J jnl
Going from where to why - interpretable prediction of protein subcellular localization.
Bioinform.
Sebastian Briesemeister, Jörg Rahnenführer, Oliver Kohlbacher
2010 — conf
Graphlet Data Mining of Energetical Interaction Patterns in Protein 3D Structures.
IJCCI (ICFC-ICNC)
Carsten Henneges, Marc Röttig, Oliver Kohlbacher, Andreas Zell
2010 C conf
Grid-Workflows in Molecular Science.
Software Engineering (Workshops)
Georg Birkenheuer, Sebastian Breuers, André Brinkmann, Dirk Blunk, Gregor Fels, Sandra Gesing, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Lars Packschies
2010 — conf
Novel Machine Learning Methods for MHC Class I Binding Prediction.
PRIB
Christian Widmer, Nora C. Toussaint, Yasemin Altun, Oliver Kohlbacher, Gunnar Rätsch
2010 — ch.
OpenMS and TOPP: Open Source Software for LC-MS Data Analysis.
Proteome Bioinformatics
Knut Reinert, Oliver Kohlbacher
2010 J jnl
Rescoring of docking poses using force field-based methods.
J. Cheminformatics
Nina M. Fischer, Wolfgang M. Schneider, Oliver Kohlbacher
2010 B conf
TOPP goes Rapid The OpenMS Proteomics Pipeline in a Grid-Enabled Web Portal.
CCGRID
Sandra Gesing, Jano I. van Hemert, Jos Koetsier, Andreas Bertsch, Oliver Kohlbacher
2010 J jnl
YLoc - an interpretable web server for predicting subcellular localization.
Nucleic Acids Res.
Sebastian Briesemeister, Jörg Rahnenführer, Oliver Kohlbacher
2009 J jnl
A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis.
Bioinform.
Andreas Keller, Christina Backes, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Eckart Meese, Hans-Peter Lenhof
2009 J jnl
FRED - a framework for T-cell epitope detection.
Bioinform.
Magdalena Feldhahn, Pierre Dönnes, Philipp Thiel, Oliver Kohlbacher
2009 — conf
Integer Linear Programming in Computational Biology.
Efficient Algorithms
Ernst Althaus, Gunnar W. Klau, Oliver Kohlbacher, Hans-Peter Lenhof, Knut Reinert
2009 J jnl
KIRMES: kernel-based identification of regulatory modules in euchromatic sequences.
Bioinform.
Sebastian J. Schultheiß, Wolfgang Busch, Jan U. Lohmann, Oliver Kohlbacher, Gunnar Rätsch
2009 J jnl
KIRMES: kernel-based identification of regulatory modules in euchromatic sequences.
BMC Bioinform.
Sebastian J. Schultheiß, Wolfgang Busch, Jan U. Lohmann, Oliver Kohlbacher, Gunnar Rätsch
2009 J jnl
Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies.
BMC Syst. Biol.
Andreas Dräger, Marcel Kronfeld, Michael J. Ziller, Jochen Supper, Hannes Planatscher, Jørgen B. Magnus, Marco Oldiges, Oliver Kohlbacher, Andreas Zell
2009 J jnl
MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction.
BMC Bioinform.
Torsten Blum, Sebastian Briesemeister, Oliver Kohlbacher
2009 A conf
On Open Problems in Biological Network Visualization.
GD
Mario Albrecht, Andreas Kerren, Karsten Klein, Oliver Kohlbacher, Petra Mutzel, Wolfgang Paul, Falk Schreiber, Michael Wybrow
2009 J jnl
OptiTope - a web server for the selection of an optimal set of peptides for epitope-based vaccines.
Nucleic Acids Res.
Nora C. Toussaint, Oliver Kohlbacher
2009 — conf
Portals for Life Sciences - a Brief Introduction.
IWPLS
Sandra Gesing, Oliver Kohlbacher, Jano I. van Hemert
2008 — conf
08101 Abstracts Collection - Computational Proteomics.
Computational Proteomics
Knut Reinert, Christian G. Huber, Kathrin Marcus, Michal Linial, Oliver Kohlbacher
2008 — conf
08191 Abstracts Collection - Graph Drawing with Applications to Bioinformatics and Social Sciences.
Graph Drawing with Applications to Bioinformatics and Social Sciences
Stephen P. Borgatti, Stephen G. Kobourov, Oliver Kohlbacher, Petra Mutzel
2008 — conf
08191 Executive Summary - Graph Drawing with Applications to Bioinformatics and Social Sciences.
Graph Drawing with Applications to Bioinformatics and Social Sciences
Stephen P. Borgatti, Stephen G. Kobourov, Oliver Kohlbacher, Petra Mutzel
2008 — conf
08191 Working Group Summary - Visually Comparing a Set of Graphs.
Graph Drawing with Applications to Bioinformatics and Social Sciences
Mario Albrecht, Alejandro Estrella-Balderrama, Markus Geyer, Carsten Gutwenger, Karsten Klein, Oliver Kohlbacher, Michael Schulz
2008 J jnl
A Mathematical Framework for the Selection of an Optimal Set of Peptides for Epitope-Based Vaccines.
PLoS Comput. Biol.
Nora C. Toussaint, Pierre Dönnes, Oliver Kohlbacher
2008 J jnl
BALLDock/SLICK: A New Method for Protein-Carbohydrate Docking.
J. Chem. Inf. Model.
Andreas Kerzmann, Jan Fuhrmann, Oliver Kohlbacher, Dirk Neumann
2008 — ed.
Computational Proteomics, 02.03. - 07.03.2008
Computational Proteomics
Christian G. Huber, Oliver Kohlbacher, Michal Linial, Kathrin Marcus, Knut Reinert
2008 J jnl
EpiToolKit - a web server for computational immunomics.
Nucleic Acids Res.
Magdalena Feldhahn, Philipp Thiel, Mathias M. Schuler, Nina Hillen, Stefan Stevanovic, Hans-Georg Rammensee, Oliver Kohlbacher
2008 J jnl
GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments.
BMC Bioinform.
Andreas Keller, Christina Backes, Maher Al-Awadhi, Andreas Gerasch, Jan Küntzer, Oliver Kohlbacher, Michael Kaufmann, Hans-Peter Lenhof
2008 — ed.
Graph Drawing with Applications to Bioinformatics and Social Sciences, 04.05. - 09.05.2008
Graph Drawing with Applications to Bioinformatics and Social Sciences
Stephen P. Borgatti, Stephen G. Kobourov, Oliver Kohlbacher, Petra Mutzel
2008 — conf
KIRMES: Kernel-based Identification of Regulatory Modules in Euchromatic Sequences.
German Conference on Bioinformatics
Sebastian J. Schultheiß, Wolfgang Busch, Jan U. Lohmann, Oliver Kohlbacher, Gunnar Rätsch
2008 J jnl
LC-MSsim - a simulation software for liquid chromatography mass spectrometry data.
BMC Bioinform.
Ole Schulz-Trieglaff, Nico Pfeifer, Clemens Gröpl, Oliver Kohlbacher, Knut Reinert
2008 J jnl
MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization.
Bioinform.
Torsten Blum, Oliver Kohlbacher
2008 C conf
Multiple Instance Learning Allows MHC Class II Epitope Predictions Across Alleles.
WABI
Nico Pfeifer, Oliver Kohlbacher
2008 J jnl
OpenMS - An open-source software framework for mass spectrometry.
BMC Bioinform.
Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher
2008 J jnl
Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics.
BMC Bioinform.
Wiebke Timm, Alexandra Scherbart, Sebastian Böcker, Oliver Kohlbacher, Tim W. Nattkemper
2008 J jnl
Using Atom Mapping Rules for an Improved Detection of Relevant Routes in Weighted Metabolic Networks.
J. Comput. Biol.
Torsten Blum, Oliver Kohlbacher
2007 J jnl
Abstract analysis of pathways using the BN++ software framework.
BMC Syst. Biol.
Jan Küntzer, Benny Kneissl, Oliver Kohlbacher, Hans-Peter Lenhof
2007 J jnl
BNDB - The Biochemical Network Database.
BMC Bioinform.
Jan Küntzer, Christina Backes, Torsten Blum, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof
2007 J jnl
Electrostatic potentials of proteins in water: a structured continuum approach.
Bioinform.
Andreas Hildebrandt, Ralf Blossey, Sergej Rjasanow, Oliver Kohlbacher, Hans-Peter Lenhof
2007 — conf
Finding Relevant Biotransformation Routes in Weighted Metabolic Networks.
German Conference on Bioinformatics
Torsten Blum, Oliver Kohlbacher
2007 J jnl
SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data.
Bioinform.
Hagit Shatkay, Annette Höglund, Scott Brady, Torsten Blum, Pierre Dönnes, Oliver Kohlbacher
2007 J jnl
Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics.
BMC Bioinform.
Nico Pfeifer, Andreas Leinenbach, Christian G. Huber, Oliver Kohlbacher
2007 J jnl
TOPP - the OpenMS proteomics pipeline.
Bioinform.
Oliver Kohlbacher, Knut Reinert, Clemens Gröpl, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Marc Sturm
2006 J jnl
A Fully Computational Model for Predicting Percutaneous Drug Absorption.
J. Chem. Inf. Model.
Dirk Neumann, Oliver Kohlbacher, Christian Merkwirth, Thomas Lengauer
2006 J jnl
BALLView: a tool for research and education in molecular modeling.
Bioinform.
Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher
2006 J jnl
BN++ - A Biological Information System.
J. Integr. Bioinform.
Jan Küntzer, Torsten Blum, Andreas Gerasch, Christina Backes, Andreas Hildebrandt, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof
2006 — ed.
Computational Proteomics, 20.-25. November 2005
Computational Proteomics
Christian G. Huber, Oliver Kohlbacher, Knut Reinert
2006 — ed.
German Conference on Bioinformatics GCB 2006, 19.09. 2006 - 22.09. 2006 in Tübingen, Germany
German Conference on Bioinformatics
Daniel H. Huson, Oliver Kohlbacher, Andrei N. Lupas, Kay Nieselt, Andreas Zell
2006 Misc conf
High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques.
Pacific Symposium on Biocomputing
Eva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt
2006 J jnl
MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition.
Bioinform.
Annette Höglund, Pierre Dönnes, Torsten Blum, Hans-Werner Adolph, Oliver Kohlbacher
2006 J jnl
SLICK - Scoring and Energy Functions for Protein-Carbohydrate Interactions.
J. Chem. Inf. Model.
Andreas Kerzmann, Dirk Neumann, Oliver Kohlbacher
2006 J jnl
SVMHC: a server for prediction of MHC-binding peptides.
Nucleic Acids Res.
Pierre Dönnes, Oliver Kohlbacher
2006 Misc conf
Significantly Improved Prediction of Subcellular Localization by Integrating Text and Protein Sequence Data .
Pacific Symposium on Biocomputing
Annette Höglund, Torsten Blum, Scott Brady, Pierre Dönnes, John San Miguel, Matthew Rocheford, Oliver Kohlbacher, Hagit Shatkay
2005 — conf
05471 Abstract Collection - Computational Proteomics.
Computational Proteomics
Christian G. Huber, Oliver Kohlbacher, Knut Reinert
2005 — conf
05471 Executive Summary - Computational Proteomics.
Computational Proteomics
Christian G. Huber, Oliver Kohlbacher, Knut Reinert
2005 — conf
A machine learning approach for prediction of DNA and peptide retention times.
Computational Proteomics
Marc Sturm, Sascha Quinten, Christian G. Huber, Oliver Kohlbacher
2005 — conf
Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples.
CompLife
Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber, Bettina M. Mayr, Christoph L. Klein
2005 — conf
Analysis of MHC-Peptide Binding Using Amino Acid Property-Based Decision Rules.
ICAPR (1)
Jochen Supper, Pierre Dönnes, Oliver Kohlbacher
2005 J jnl
BALLView: An object-oriented molecular visualization and modeling framework.
J. Comput. Aided Mol. Des.
Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher
2005 — ed.
Computational Life Sciences, First International Symposium, CompLife 2005, Konstanz, Germany, September 25-27, 2005, Proceedings
CompLife
Michael R. Berthold, Robert C. Glen, Kay Diederichs, Oliver Kohlbacher, Ingrid Fischer
2005 — conf
Evaluation of LC-MS data for the absolute quantitative analysis of marker proteins.
Computational Proteomics
Nathanaël Delmotte, Bettina M. Mayr, Andreas Leinenbach, Knut Reinert, Oliver Kohlbacher, Christoph L. Klein, Christian G. Huber
2005 — conf
High-accuracy peak picking of proteomics data.
Computational Proteomics
Eva Lange, Clemens Gröpl, Oliver Kohlbacher, Andreas Hildebrandt
2005 — conf
Using N-terminal targeting sequences, amino acid composition, and sequence motifs for predicting protein subcellular localizations.
German Conference on Bioinformatics
Annette Höglund, Pierre Dönnes, Torsten Blum, Hans-Werner Adolph, Oliver Kohlbacher
2004 J jnl
Differenzielle Proteomanalyse - Experimentelle Methoden, algorithmische Herausforderungen (Differential Analysis in Proteomics: Experimental Methods, Algorithmic Challenges).
it Inf. Technol.
Oliver Kohlbacher, Knut Reinert
2003 — conf
Epitope Prediction Algorithms for Peptide based Vaccine Design.
CSB
Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail
2002 J jnl
A Combinatorial Approach to Protein Docking with Flexible Side Chains.
J. Comput. Biol.
Ernst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller
2002 C conf
BioMiner - modeling, analyzing, and visualizing biochemical pathways and networks.
ECCB
Marite Sirava, T. Schäfer, Markus Eiglsperger, Michael Kaufmann, Oliver Kohlbacher, Erich Bornberg-Bauer, Hans-Peter Lenhof
2001 B conf
A NMR-spectra-based scoring function for protein docking.
RECOMB
Oliver Kohlbacher, Andreas Burchardt, Andreas Moll, Andreas Hildebrandt, Peter Bayer, Hans-Peter Lenhof
2001 — —
New approaches to protein docking.
Oliver Kohlbacher
2001 — conf
Visualization challenges for a new cyberpharmaceutical computing paradigm.
IEEE Symposium on Parallel and Large-Data Visualization and Graphics
Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail
2000 B conf
A combinatorial approach to protein docking with flexible side-chains.
RECOMB
Ernst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller
2000 J jnl
BALL-rapid software prototyping in computational molecular biology.
Bioinform.
Oliver Kohlbacher, Hans-Peter Lenhof
2000 J jnl
Rapid Software Prototyping in Molecular Modeling Using the Biochemical Algorithms Library (BALL).
ACM J. Exp. Algorithmics
Nicolas Boghossian, Oliver Kohlbacher, Hans-Peter Lenhof
1999 — conf
BALL: Biochemical Algorithms Library.
WAE
Nicolas Boghossian, Oliver Kohlbacher, Hans-Peter Lenhof
1999 — conf
Rapid Software Prototyping in Computational Molecular Biology.
German Conference on Bioinformatics
Oliver Kohlbacher, Hans-Peter Lenhof