Olga V. Kalinina

17 papers Journal 17
YearRankTypeTitle / Venue / Authors
2023 J jnl
GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES.
J. Cheminformatics
Roman Joeres, Daniel Bojar, Olga V. Kalinina
2023 J jnl
MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants.
Bioinform.
Sanjay Kumar Srikakulam, Sebastian Keller, Fawaz Dabbaghie, Robert Bals, Olga V. Kalinina
2022 J jnl
Modeling the Effect of Hydrophobicity on the Passive Permeation of Solutes across a Bacterial Model Membrane.
J. Chem. Inf. Model.
Carla F. Sousa, Mohamed A. M. Kamal, Robert Richter, Kalanika Elamaldeniya, Rolf W. Hartmann, Martin Empting, Claus-Michael Lehr, Olga V. Kalinina
2022 J jnl
Phylogenetic inference of changes in amino acid propensities with single-position resolution.
PLoS Comput. Biol.
Galya V. Klink, Olga V. Kalinina, Georgii A. Bazykin
2021 J jnl
An extended catalogue of tandem alternative splice sites in human tissue transcriptomes.
PLoS Comput. Biol.
Andrey A. Mironov, Stepan Denisov, Alexander Greß, Olga V. Kalinina, Dmitri D. Pervouchine
2021 J jnl
DIGGER: exploring the functional role of alternative splicing in protein interactions.
Nucleic Acids Res.
Zakaria Louadi, Kevin Yuan, Alexander Greß, Olga Tsoy, Olga V. Kalinina, Jan Baumbach, Tim Kacprowski, Markus List
2020 J jnl
SphereCon - a method for precise estimation of residue relative solvent accessible area from limited structural information.
Bioinform.
Alexander Greß, Olga V. Kalinina
2016 J jnl
BALL-SNPgp - from genetic variants toward computational diagnostics.
Bioinform.
Sabine C. Mueller, Christina Backes, Alexander Greß, Nina Baumgarten, Olga V. Kalinina, Andreas Moll, Oliver Kohlbacher, Eckart Meese, Andreas Keller
2016 J jnl
Patterns of amino acid conservation in human and animal immunodeficiency viruses.
Bioinform.
Olga S. Voitenko, Andi Dhroso, Anna Feldmann, Dmitry Korkin, Olga V. Kalinina
2016 J jnl
StructMAn: annotation of single-nucleotide polymorphisms in the structural context.
Nucleic Acids Res.
Alexander Greß, Vasily Ramensky, Joachim Büch, Andreas Keller, Olga V. Kalinina
2014 J jnl
Entropy gain due to water release upon ligand binding.
J. Cheminformatics
Mazen Ahmad, Olga V. Kalinina, Thomas Lengauer
2012 J jnl
ProtChemSI: a network of protein-chemical structural interactions.
Nucleic Acids Res.
Olga V. Kalinina, Oliver Wichmann, Gordana Apic, Robert B. Russell
2011 J jnl
Combinations of Protein-Chemical Complex Structures Reveal New Targets for Established Drugs.
PLoS Comput. Biol.
Olga V. Kalinina, Oliver Wichmann, Gordana Apic, Robert B. Russell
2010 J jnl
An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies.
Algorithms Mol. Biol.
Pavel V. Mazin, Mikhail S. Gelfand, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Anatoly R. Rubinov, Robert B. Russell, Olga V. Kalinina
2009 J jnl
Combining specificity determining and conserved residues improves functional site prediction.
BMC Bioinform.
Olga V. Kalinina, Mikhail S. Gelfand, Robert B. Russell
2004 J jnl
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins.
Nucleic Acids Res.
Olga V. Kalinina, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova
2003 J jnl
The channel in transporters is formed by residues that are rare in transmembrane helices.
Silico Biol.
Olga V. Kalinina, Vsevolod J. Makeev, Roman A. Sutormin, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova