Olga Baysal

59 papers A* 3A 18C 1Journal 13Unranked 17
YearRankTypeTitle / Venue / Authors
2026 J jnl
J. Syst. Softw.
Soroush Javdan, Pragash Krishnamoorthy, Olga Baysal
2025 J jnl
CoRR
Chakkrit Tantithamthavorn, Nicole Novielli, Ayushi Rastogi, Olga Baysal, Bram Adams
2025 J jnl
ACM SIGSOFT Softw. Eng. Notes
Chakkrit Tantithamthavorn, Nicole Novielli, Ayushi Rastogi, Olga Baysal, Bram Adams
2025 J jnl
CoRR
Soroush Javdan, Pragash Krishnamoorthy, Olga Baysal
2025 A conf
ICPC
Michael MacInnis, Olga Baysal, Michele Lanza
2025 J jnl
CoRR
Michael MacInnis, Olga Baysal, Michele Lanza
2024 A ed.
ICPC
Igor Steinmacher, Mario Linares-Vásquez, Kevin Patrick Moran, Olga Baysal
2023 A conf
MSR
Oz Kilic, Nathaniel Bowness, Olga Baysal
2023 J jnl
CoRR
AmirHossein Naghshzan, Saeed Khalilazar, Pierre Poilane, Olga Baysal, Latifa Guerrouj, Foutse Khomh
2023 J jnl
CoRR
AmirHossein Naghshzan, Latifa Guerrouj, Olga Baysal
2022 A conf
MSR
Keerthana Muthu Subash, Lakshmi Prasanna Kumar, Sri Lakshmi Vadlamani, Preetha Chatterjee, Olga Baysal
2022 conf
ICSE (NIER)
Michael MacInnis, Olga Baysal, Michele Lanza
2021 conf
SER&IP@ICSE
Sri Lakshmi Vadlamani, Benjamin Emdon, Joshua Arts, Olga Baysal
2021 conf
SoHeal@ICSE
Khadija Osman, Olga Baysal
2021 C conf
SCAM
AmirHossein Naghshzan, Latifa Guerrouj, Olga Baysal
2021 J jnl
CoRR
AmirHossein Naghshzan, Latifa Guerrouj, Olga Baysal
2021 A conf
MSR
Saraj Singh Manes, Olga Baysal
2021 J jnl
IEEE Trans. Software Eng.
Gias Uddin, Olga Baysal, Latifa Guerrouj, Foutse Khomh
2021 J jnl
CoRR
Gias Uddin, Olga Baysal, Latifa Guerrouj, Foutse Khomh
2020 A conf
SANER
Jonathan A. Saddler, Cole S. Peterson, Sanjana Sama, Shruthi Nagaraj, Olga Baysal, Latifa Guerrouj, Bonita Sharif
2020 A conf
ICSME
Sri Lakshmi Vadlamani, Olga Baysal
2019 conf
DASC/PiCom/DataCom/CyberSciTech
Jingyi Shen, Olga Baysal, M. Omair Shafiq
2019 A conf
MSR
Saraj Singh Manes, Olga Baysal
2018 ed.
SWAN@ESEC/SIGSOFT FSE
Olga Baysal, Tim Menzies
2018 A conf
MSR
Christopher Bellman, Ahmad Seet, Olga Baysal
2018 conf
ICSE (SEIP)
Oleksii Kononenko, Tresa Rose, Olga Baysal, Michael W. Godfrey, Dennis Theisen, Bart de Water
2017 J jnl
CoRR
O. Ekaba Bisong, Eric Tran, Olga Baysal
2017 A conf
MSR
O. Ekaba Bisong, Eric Tran, Olga Baysal
2017 ed.
SWAN@ESEC/SIGSOFT FSE
Olga Baysal, Tim Menzies
2016 ch.
Perspectives on Data Science for Software Engineering
Olga Baysal
2016 A* conf
ICSE
Oleksii Kononenko, Olga Baysal, Michael W. Godfrey
2016 J jnl
Empir. Softw. Eng.
Olga Baysal, Oleksii Kononenko, Reid Holmes, Michael W. Godfrey
2016 A conf
ICPC
Latifa Guerrouj, Olga Baysal
2016 conf
SEHS@ICSE
Kenny Byrd, Alisher Mansurov, Olga Baysal
2016 conf
CSI-SE@ICSE
Haifa Alharthi, Djedjiga Outioua, Olga Baysal
2016 ed.
SWAN@SIGSOFT FSE
Olga Baysal, Jacek Czerwonka, Latifa Guerrouj, David Lo, Brendan Murphy
2016 conf
ICSE (Companion Volume)
Latifa Guerrouj, Olga Baysal, David Lo, Foutse Khomh
2015 ed.
SWAN@SANER
Olga Baysal, Latifa Guerrouj
2015 conf
CASCON
Joanna Ng, Frank Dehne, Stan Matwin, Herna L. Viktor, Olga Baysal
2015 A conf
ICSME
Oleksii Kononenko, Olga Baysal, Latifa Guerrouj, Yaxin Cao, Michael W. Godfrey
2015 ch.
The Art and Science of Analyzing Software Data
Olga Baysal, Oleksii Kononenko, Reid Holmes, Michael W. Godfrey
2014 conf
ICSE Companion
Oleksii Kononenko, Olga Baysal, Reid Holmes, Michael W. Godfrey
2014 A conf
MSR
Oleksii Kononenko, Olga Baysal, Reid Holmes, Michael W. Godfrey
2014 conf
SIGSOFT FSE
Olga Baysal, Reid Holmes, Michael W. Godfrey
2014
Olga Baysal
2013 J jnl
IEEE Softw.
Olga Baysal, Reid Holmes, Michael W. Godfrey
2013 conf
DAPSE@ICSE
Olga Baysal, Oleksii Kononenko, Reid Holmes, Michael W. Godfrey
2013 A* conf
ICSE
Olga Baysal
2013 A* conf
ICSE
Olga Baysal, Reid Holmes, Michael W. Godfrey
2013 A conf
MSR
Hadi Hemmati, Sarah Nadi, Olga Baysal, Oleksii Kononenko, Wei Wang, Reid Holmes, Michael W. Godfrey
2013 conf
WCRE
Olga Baysal, Oleksii Kononenko, Reid Holmes, Michael W. Godfrey
2012 A conf
MSR
Olga Baysal, Reid Holmes, Michael W. Godfrey
2012 conf
USER@ICSE
Olga Baysal, Reid Holmes, Michael W. Godfrey
2012 conf
WCRE
Olga Baysal, Oleksii Kononenko, Reid Holmes, Michael W. Godfrey
2011 A conf
MSR
Olga Baysal, Ian J. Davis, Michael W. Godfrey
2009 A conf
ICPC
Olga Baysal, Michael W. Godfrey, Robin Cohen
2008 conf
DSOM
Carol J. Fung, Olga Baysal, Jie Zhang, Issam Aib, Raouf Boutaba
2007 A conf
MSR
Olga Baysal, Andrew J. Malton
2005 conf
CASCON
Raihan Al-Ekram, Archana Adma, Olga Baysal
redb/extractors/extractor.py
← Index redb/extractors/extractor.py python
import hashlib
import inspect
from abc import ABCMeta, abstractmethod
from dataclasses import asdict
from functools import cached_property
from datetime import datetime, timezone
import math
from typing import Counter, List, Optional, Dict, Any, Tuple
from redb import settings
from redb.models.dataclasses import Hash
from .database_exporters import DatabaseExporter, ElasticsearchExporter, ClickHouseExporter, PrintExporter

class Extractor(metaclass=ABCMeta):
    def __init__(
        self,
        filepath: str,
        log: Any,
        exporters: Optional[List[DatabaseExporter]] = None,
        index_prefix: Optional[str] = None,
        source: Optional[str] = None,
        elastic_index: Optional[str] = None,
        known_benign: bool = False,
        known_malicious: bool = False,
        precomputed_hashes: Optional[Dict[str, str]] = None,
    ):
        self.log = log
        self.log.debug(f"Creating {self.__class__.__name__}")
        self.filepath = filepath
        self.source = source
        self.exporters = exporters or []
        self.index_prefix = index_prefix if index_prefix else settings.ELASTIC_BINARIES_COLLECTION
        self.elastic_index = self.index_prefix + (elastic_index if elastic_index else "")
        self.known_benign = known_benign
        self.known_malicious = known_malicious

        # Use precomputed hashes if provided (e.g., from machofile, pefile)
        # Otherwise compute them from binary
        if precomputed_hashes:
            self.md5 = precomputed_hashes.get('md5') or precomputed_hashes.get('MD5')
            self.sha1 = precomputed_hashes.get('sha1') or precomputed_hashes.get('SHA1')
            self.sha256 = precomputed_hashes.get('sha256') or precomputed_hashes.get('SHA256')
        else:
            self.md5 = hashlib.md5(self.binary).hexdigest()
            self.sha1 = hashlib.sha1(self.binary).hexdigest()
            self.sha256 = hashlib.sha256(self.binary).hexdigest()
        self.hash = Hash(self.md5, self.sha1, self.sha256)

    @cached_property
    def binary(self):
        with open(self.filepath, "rb") as f:
            data = f.read()
        return data

    @property
    @abstractmethod
    def tag(self):
        pass

    @abstractmethod
    def extract(self):
        """
        this method defines the extracted data
        """

    @staticmethod
    def process_binary_string(s):
        # Remove \x00 padding
        s = s.rstrip(b"\x00")

        # Check if there are any non-printable characters
        has_non_printable = any(byte < 32 or byte > 126 for byte in s)

        if not has_non_printable:
            # If all characters are printable, decode the string
            return s.decode()
        else:
            # If there are non-printable characters, represent them as \xDD
            return "".join(
                [
                    f"\\x{byte:02x}" if byte < 32 or byte > 126 else chr(byte)
                    for byte in s
                ]
            )

    @staticmethod
    def remove_non_utf8(binary_string):
        decoded = b""
        for i in range(len(binary_string)):
            try:
                # Try to decode each byte
                char = binary_string[i : i + 1].decode("utf-8")
                decoded += char.encode("utf-8")
            except UnicodeDecodeError:
                # Skip this byte if it can't be decoded
                continue
        return decoded

    def calculate_entropy(self, data):
        """Calculate the entropy of a chunk of data.
        Based on pefile.SectionStructure.entropy_H.
        """
        # self.log.debug(inspect.currentframe().f_code.co_name)
        if not data:
            return 0.0

        if type(data) == str:
            counts = Counter(data)
            frequencies = ((i / len(data)) for i in counts.values())
            return - sum(f * math.log(f, 2) for f in frequencies)
        else:
            occurences = Counter(bytearray(data))
            entropy = 0
            for x in occurences.values():
                p_x = float(x) / len(data)
                entropy -= p_x * math.log(p_x, 2)
            return entropy

    @abstractmethod
    def prepare_export_data(self, exporter_type: str) -> Tuple[List[Any], List[str], List[str]]:
        """
        Prepare data for specific export type
        Returns:
            Tuple containing:
            - data: List of values to insert
            - column_names: List of column names
            - column_type_names: List of column types
        """
        pass

    def export_data(self):
        """Export data to all configured exporters

        Returns:
            True: Export succeeded
            False: Export failed (actual error)
            None: No data to export (not an error, e.g., no overlay, no signature)
        """
        self.log.debug(inspect.currentframe().f_code.co_name)
        success = True
        extracted_data = self.extract()

        if extracted_data is None:
            self.log.debug("extract() returned None, skipping export")
            return None  # No data to export, not a failure
            
        for exporter in self.exporters:
            if isinstance(exporter, PrintExporter):
                # For PrintExporter, we pass the extracted data directly
                success &= exporter.export(extracted_data)
            else:
                # Get the data prepared for this specific exporter type
                export_data = self.prepare_export_data(exporter.__class__.__name__)
                
                if export_data is None:
                    self.log.debug(f"prepare_export_data returned None for {exporter.__class__.__name__}")
                    return False
                
                if isinstance(exporter, ElasticsearchExporter):
                    success &= exporter.export(
                        export_data,
                        index=self.elastic_index,
                        tag=self.tag(),
                        hashes=asdict(self.hash),
                        known_benign=self.known_benign,
                        known_malicious=self.known_malicious
                    )
                elif isinstance(exporter, ClickHouseExporter):
                    # For ClickHouse, we need to pass the table name and the prepared data
                    success &= exporter.export(
                        export_data,
                        table=self.get_clickhouse_table(),
                        # Add these parameters explicitly
                        column_names=export_data[1] if isinstance(export_data, tuple) else None,
                        column_type_names=export_data[2] if isinstance(export_data, tuple) else None
                    )
                
        return success

    @abstractmethod
    def get_clickhouse_table(self) -> str:
        """Return the appropriate ClickHouse table name"""
        pass
    # def export_to_elastic(self, list_of_dataclasses, tag=None):
    #     self.log.debug(inspect.currentframe().f_code.co_name)

    #     if not isinstance(list_of_dataclasses, list):
    #         self.log.error("Called export_to_elastic wrongly")

    #     now_t = datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S")
    #     for dataclass_ in list_of_dataclasses:
    #         if not settings.ELASTIC_CLIENT.ping():
    #             self.log.error("[CONNECTION ERROR] ping to elastic failed")
            
    #         # Convert dataclass to dict and filter out None values
    #         document = {k: v for k, v in asdict(dataclass_).items() if v is not None}
            
    #         if tag:
    #             document["tag"] = [tag, self.tag()]
    #         else:
    #             document["tag"] = self.tag()
    #         hashes = asdict(self.hash)
    #         document |= hashes
    #         document["timestamp_utc"] = now_t
    #         # document["source"] = self.source
    #         document["known_benign"] = self.known_benign
    #         document["known_malicious"] = self.known_malicious

    #         if "_id" in document:
    #             tmp_id = document.pop("_id") + document["sha256"]
    #             _id = hashlib.sha256(tmp_id.encode()).hexdigest()
    #         else:
    #             _id = document["sha256"]

    #         # self.log.debug(f"[DEBUG] about to export {type(document)} {document}")
    #         try:
    #             doc_dump = json.dumps(document)
    #         except TypeError as e:
    #             self.log.error(
    #                 f"Failed export of document. " f"full document: {document}"
    #             )
    #             raise e

    #         # body={"doc": doc_dump,
    #         #       "doc_as_upsert": True  # Create the document if it doesn't exist
    #         # }

    #         # Check if the index exists, and create it if it doesn't
    #         # if not settings.ELASTIC_CLIENT.indices.exists(index=self.elastic_index):
    #         #     settings.ELASTIC_CLIENT.indices.create(index=self.elastic_index)
    #         # pprint(doc_dump) #DEBUG
    #         # print("[DEBUG] _id: " + _id)
    #         # print("[DEBUG] index: " + self.elastic_index)
    #         settings.ELASTIC_CLIENT.index(
    #             index=self.elastic_index, id=_id, document=doc_dump
    #         )