Oleh Dzyubachyk

28 papers Journal 14Unranked 14

Year	Rank	Type	Title / Venue / Authors
2024	—	`conf`	From Feature Maps to Few-Shot Cell Segmentation. MOVI@MICCAI Serban Vadineanu, Daniël Maria Pelt, Oleh Dzyubachyk, Kees Joost Batenburg
2024	—	`conf`	Intensity Inhomogeneity Correction for Large Panoramic Electron Microscopy Images. MOVI@MICCAI Oleh Dzyubachyk, Abraham J. Koster, Boudewijn P. F. Lelieveldt
2024	J	`jnl`	Reducing Manual Annotation Costs for Cell Segmentation by Upgrading Low-Quality Annotations. J. Imaging Serban Vadineanu, Daniël Maria Pelt, Oleh Dzyubachyk, Kees Joost Batenburg
2023	—	`conf`	Reducing Manual Annotation Costs for Cell Segmentation by Upgrading Low-Quality Annotations. MILLanD@MICCAI Serban Vadineanu, Daniël Maria Pelt, Oleh Dzyubachyk, Kees Joost Batenburg
2022	—	`conf`	An Analysis of the Impact of Annotation Errors on the Accuracy of Deep Learning for Cell Segmentation. MIDL Serban Vadineanu, Daniël Maria Pelt, Oleh Dzyubachyk, Kees Joost Batenburg
2022	J	`jnl`	The Infrared Thermography Toolbox: An Open-access Semi-automated Segmentation Tool for Extracting Skin Temperatures in the Thoracic Region including Supraclavicular Brown Adipose Tissue. J. Medical Syst. Aashley S. D. Sardjoe Mishre, Maaike E. Straat, Borja Martinez-Tellez, Andrea Mendez Gutierrez, Sander Kooijman, Mariëtte R. Boon, Oleh Dzyubachyk, Andrew Webb, Patrick C. N. Rensen, Hermien E. Kan
2021	—	`conf`	Intensity Correction and Standardization for Electron Microscopy Data. MIDL Oleh Dzyubachyk, Roman I Koning, Aat A. Mulder, M. Christina Avramut, Frank G. A. Faas, Abraham J. Koster
2021	J	`jnl`	On the ability to exploit signal fluctuations in pseudocontinuous arterial spin labeling for inferring the major flow territories from a traditional perfusion scan. NeuroImage Thijs W. van Harten, Oleh Dzyubachyk, Reinoud P. H. Bokkers, Marieke J. H. Wermer, Matthias J. P. van Osch
2019	—	`conf`	Comparative Analysis of Magnetic Resonance Fingerprinting Dictionaries via Dimensionality Reduction. GLMI@MICCAI Oleh Dzyubachyk, Kirsten Koolstra, Nicola Pezzotti, Boudewijn P. F. Lelieveldt, Andrew G. Webb, Peter Börnert
2019	J	`jnl`	Hierarchical stochastic neighbor embedding as a tool for visualizing the encoding capability of magnetic resonance fingerprinting dictionaries. CoRR Kirsten Koolstra, Peter Börnert, Boudewijn P. F. Lelieveldt, Andrew G. Webb, Oleh Dzyubachyk
2017	J	`jnl`	Automated Ischemic Lesion Segmentation in MRI Mouse Brain Data after Transient Middle Cerebral Artery Occlusion. Frontiers Neuroinformatics Inge A. Mulder, Artem Khmelinskii, Oleh Dzyubachyk, Sebastiaan de Jong, Nathalie Rieff, Marieke J. H. Wermer, Mathias Hoehn, Boudewijn P. F. Lelieveldt, Arn M. J. M. van den Maagdenberg
2017	J	`jnl`	Computer-aided evaluation of inflammatory changes over time on MRI of the spine in patients with suspected axial spondyloarthritis: a feasibility study. BMC Medical Imaging Evgeni Aizenberg, Rosaline van den Berg, Zineb Ez-Zaitouni, Désirée van der Heijde, Monique Reijnierse, Oleh Dzyubachyk, Boudewijn P. F. Lelieveldt
2017	J	`jnl`	Fully-automatic left ventricular segmentation from long-axis cardiac cine MR scans. Medical Image Anal. Rahil Shahzad, Qian Tao, Oleh Dzyubachyk, Marius Staring, Boudewijn P. F. Lelieveldt, Rob J. van der Geest
2017	J	`jnl`	MRI Mouse Brain Data of Ischemic Lesion after Transient Middle Cerebral Artery Occlusion. Frontiers Neuroinformatics Inge A. Mulder, Artem Khmelinskii, Oleh Dzyubachyk, Sebastiaan de Jong, Marieke J. H. Wermer, Mathias Hoehn, Boudewijn P. F. Lelieveldt, Arn M. J. M. van den Maagdenberg
2016	—	`conf`	Automated Cardiovascular Segmentation in Patients with Congenital Heart Disease from 3D CMR Scans: Combining Multi-atlases and Level-Sets. RAMBO+HVSMR@MICCAI Rahil Shahzad, Shan Gao, Qian Tao, Oleh Dzyubachyk, Rob J. van der Geest
2015	J	`jnl`	Automated extraction and labelling of the arterial tree from whole-body MRA data. Medical Image Anal. Rahil Shahzad, Oleh Dzyubachyk, Marius Staring, Joel Kullberg, Lars Johansson, Håkan Ahlström, Boudewijn P. F. Lelieveldt, Rob J. van der Geest
2014	J	`jnl`	A benchmark for comparison of cell tracking algorithms. Bioinform. Martin Maska, Vladimír Ulman, David Svoboda, Pavel Matula, Petr Matula, Cristina Ederra, Ainhoa Urbiola, Tomás España, Subramanian Venkatesan, Deepak M. W. Balak, Pavel Karas, Tereza Bolcková, Markéta Streitová, Craig Carthel, Stefano Coraluppi, Nathalie Harder, Karl Rohr, Klas E. G. Magnusson, Joakim Jaldén, Helen M. Blau, Oleh Dzyubachyk, Pavel Krízek, Guy M. Hagen, David Pastor-Escuredo, Daniel Jimenez-Carretero, María J. Ledesma-Carbayo, Arrate Muñoz-Barrutia, Erik Meijering, Michal Kozubek, Carlos Ortiz-de-Solorzano
2013	J	`jnl`	Comparative exploration of whole-body MR through locally rigid transforms. Int. J. Comput. Assist. Radiol. Surg. Oleh Dzyubachyk, Jorik Blaas, Charl P. Botha, Marius Staring, Monique Reijnierse, Johan L. Bloem, Rob J. van der Geest, Boudewijn P. F. Lelieveldt
2013	—	`conf`	Improved Myocardial Scar Characterization by Super-Resolution Reconstruction in Late Gadolinium Enhanced MRI. MICCAI (3) Oleh Dzyubachyk, Qian Tao, Dirk H. J. Poot, Hildo J. Lamb, Katja Zeppenfeld, Boudewijn P. F. Lelieveldt, Rob J. van der Geest
2013	—	`conf`	Joint Intensity Inhomogeneity Correction for Whole-Body MR Data. MICCAI (1) Oleh Dzyubachyk, Rob J. van der Geest, Marius Staring, Peter Börnert, Monique Reijnierse, Johan L. Bloem, Boudewijn P. F. Lelieveldt
2012	—	`conf`	Super-resolution reconstruction of whole-body MRI mouse data: An interactive approach. ISBI Artem Khmelinskii, Esben Plenge, Peter Kok, Oleh Dzyubachyk, Dirk H. J. Poot, E. Suidgeest, Charl P. Botha, Wiro J. Niessen, Louise van der Weerd, Erik Meijering, Boudewijn P. F. Lelieveldt
2011	—	`conf`	Automated lineage tree reconstruction from Caenorhabditis elegans image data using particle filtering based cell tracking. ISBI Noemí Carranza-Herrezuelo, Ihor Smal, Oleh Dzyubachyk, Wiro J. Niessen, Erik Meijering
2010	J	`jnl`	Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy. IEEE Trans. Medical Imaging Oleh Dzyubachyk, Wiggert A. van Cappellen, Jeroen Essers, Wiro J. Niessen, Erik Meijering
2010	J	`jnl`	Automated analysis of time-lapse fluorescence microscopy images: from live cell images to intracellular foci. Bioinform. Oleh Dzyubachyk, Jeroen Essers, Wiggert A. van Cappellen, Céline Baldeyron, Akiko Inagaki, Wiro J. Niessen, Erik Meijering
2010	J	`jnl`	Correction to "Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy". IEEE Trans. Medical Imaging Oleh Dzyubachyk, Wiggert A. van Cappellen, Jeroen Essers, Wiro J. Niessen, Erik Meijering
2009	—	`conf`	Energy Minimization Methods for Cell Motion Correction and Intracellular Analysis in Live-Cell Fluorescence Microscopy. ISBI Oleh Dzyubachyk, Wiggert A. van Cappellen, Jeroen Essers, Wiro J. Niessen, Erik Meijering
2008	—	`conf`	Advanced level-set based multiple-cell segmentation and tracking in time-lapse fluorescence microscopy images. ISBI Oleh Dzyubachyk, Wiro J. Niessen, Erik Meijering
2007	—	`conf`	A Variational Model for Level-set Based Cell Tracking in Time-lapse Fluorescence Microscopy Images. ISBI Oleh Dzyubachyk, Wiro J. Niessen, Erik Meijering