Olcay Sertel

25 papers B 2C 1Misc 4Journal 8Unranked 10
YearRankTypeTitle / Venue / Authors
2011 J jnl
IEEE Trans. Biomed. Eng.
Murat Dundar, Sunil Badve, Gökhan Bilgin, Vikas C. Raykar, Rohit K. Jain, Olcay Sertel, Metin N. Gurcan
2011 J jnl
Comput. Medical Imaging Graph.
Olcay Sertel, Belma Dogdas, Chi Sung Chiu, Metin N. Gurcan
2010 B conf
ICPR
Murat Dundar, Sunil Badve, Vikas C. Raykar, Rohit K. Jain, Olcay Sertel, Metin N. Gurcan
2010 B conf
ICPR
Olcay Sertel, Ümit V. Çatalyürek, Gerard Lozanski, Arwa Shanaah, Metin N. Gurcan
2010 J jnl
IEEE Trans. Biomed. Eng.
Olcay Sertel, Gerard Lozanski, Arwa Shana'ah, Metin N. Gurcan
2010 conf
ISBI
Olcay Sertel, Belma Dogdas, Chi Sung Chiu, Metin N. Gurcan
2009 J jnl
Pattern Recognit.
Jun Kong, Olcay Sertel, Hiroyuki Shimada, Kim L. Boyer, Joel H. Saltz, Metin N. Gurcan
2009 J jnl
Pattern Recognit.
Olcay Sertel, Jun Kong, Hiroyuki Shimada, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2009 C conf
CLUSTER
George Teodoro, Rafael Sachetto Oliveira, Olcay Sertel, Metin N. Gurcan, Wagner Meira Jr., Ümit V. Çatalyürek, Renato Ferreira
2009 J jnl
Comput. Methods Programs Biomed.
Lee Cooper, Olcay Sertel, Jun Kong, Gerard Lozanski, Kun Huang, Metin N. Gurcan
2009 J jnl
J. Signal Process. Syst.
Olcay Sertel, Jun Kong, Ümit V. Çatalyürek, Gerard Lozanski, Joel H. Saltz, Metin N. Gurcan
2009 J jnl
Int. J. Data Min. Bioinform.
Antonio Ruiz, Olcay Sertel, Manuel Ujaldon, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2008 conf
Computer-Aided Diagnosis
Jun Kong, Olcay Sertel, Hiroyuki Shimada, Kim L. Boyer, Joel H. Saltz, Metin N. Gurcan
2008 conf
MICCAI (2)
Hammad Qureshi, Olcay Sertel, Nasir M. Rajpoot, Roland Wilson, Metin N. Gurcan
2008 conf
Computer-Aided Diagnosis
Olcay Sertel, Jun Kong, Hiroyuki Shimada, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2008 conf
Computer-Aided Diagnosis
Olcay Sertel, Jun Kong, Gerard Lozanski, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2008 Misc conf
High Performance Computing Workshop
Ümit V. Çatalyürek, Timothy D. R. Hartley, Olcay Sertel, Manuel Ujaldon, Antonio Ruiz, Joel H. Saltz, Metin N. Gurcan
2008 Misc conf
ICASSP
Olcay Sertel, Jun Kong, Gerard Lozanski, Arwa Shanaah, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2007 conf
ICIP (5)
Jun Kong, Olcay Sertel, Hiroyuki Shimada, Kim L. Boyer, Joel H. Saltz, Metin N. Gurcan
2007 Misc conf
AMIA
Metin N. Gurcan, Jun Kong, Olcay Sertel, Berkant Barla Cambazoglu, Joel H. Saltz, Ümit V. Çatalyürek
2007 conf
CLADE@HPDC
Berkant Barla Cambazoglu, Olcay Sertel, Jun Kong, Joel H. Saltz, Metin N. Gurcan, Ümit V. Çatalyürek
2007 conf
BIBM
Antonio Ruiz, Olcay Sertel, Manuel Ujaldon, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2006 conf
MRCS
Olcay Sertel, Cem Ünsalan
2006 conf
ISCIS
Olcay Sertel, Cem Ünsalan
2006 Misc conf
High Performance Computing Workshop
Ümit V. Çatalyürek, Sivaramakrishnan Narayanan, Olcay Sertel, Jun Kong, Berkant Barla Cambazoglu, Tony Pan, Ashish Sharma, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Metin Nafi Gürcan, Joel H. Saltz
redb/extractors/decompiler/_archive/ghidra-test.py
← Index redb/extractors/decompiler/_archive/ghidra-test.py python
import subprocess
import json
import os
import tempfile
import uuid
import shutil
import sys
import time


def run_command(cmd, env=None):
    try:
        print(f"Starting command: {' '.join(cmd)}")
        start_time = time.time()
        process = subprocess.Popen(
            cmd, env=env, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True
        )

        while True:
            output = process.stdout.readline()
            if output:
                print(output.strip())
            if process.poll() is not None:
                break

        stdout, stderr = process.communicate()
        end_time = time.time()

        print(f"Command finished. Execution time: {end_time - start_time:.2f} seconds")
        print(f"Return code: {process.returncode}")

        if process.returncode != 0:
            print(f"Error output:\n{stderr}")
            return None
        return stdout
    except Exception as e:
        print(f"Error running command {' '.join(cmd)}: {e}")
        return None


def analyze_binary(ghidra_path, binary_path, java_script_path):
    print(f"Ghidra path: {ghidra_path}")
    print(f"Binary path: {binary_path}")
    print(f"Java script path: {java_script_path}")

    # Check if Java script exists
    if not os.path.exists(java_script_path):
        print(f"Error: Java script not found at {java_script_path}")
        return None

    # Set up environment variables
    env = os.environ.copy()
    java_home = "/usr/lib/jvm/java-17-openjdk-amd64"  # Adjust this path if needed
    env["JAVA_HOME"] = java_home
    env["PATH"] = f"{java_home}/bin:{env['PATH']}"
    env["LD_LIBRARY_PATH"] = f"{java_home}/lib:{env.get('LD_LIBRARY_PATH', '')}"

    # Print environment variables for debugging
    print(f"JAVA_HOME: {env['JAVA_HOME']}")
    print(f"PATH: {env['PATH']}")
    print(f"LD_LIBRARY_PATH: {env['LD_LIBRARY_PATH']}")

    # Check Ghidra installation
    analyzeHeadless_path = f"{ghidra_path}/support/analyzeHeadless"
    print(f"analyzeHeadless exists: {os.path.exists(analyzeHeadless_path)}")

    print(f"Binary file exists: {os.path.exists(binary_path)}")

    # Check Java
    java_version = run_command(["java", "-version"], env=env)
    print(f"Java version: {java_version}")

    # Create a temporary project directory
    project_path = tempfile.gettempdir() + "/ghidra_" + str(uuid.uuid4())
    os.makedirs(project_path, exist_ok=True)
    print(f"Created temporary project path: {project_path}")
    output_file = ""

    try:
        # Run Ghidra's headless analyzer
        analyze_cmd = [
            analyzeHeadless_path,
            project_path,
            "TempProject",
            "-import",
            binary_path,
            "-postScript",
            java_script_path,
            "-deleteProject",
        ]

        result = run_command(analyze_cmd, env=env)
        if result is None:
            return None

        # Read the output JSON file
        output_file = "ghidra_output.json"
        if os.path.exists(output_file):
            with open(output_file, "r") as f:
                functions = json.load(f)
            return functions
        else:
            print(
                f"Output file {output_file} not found. Ghidra analysis may have failed."
            )
            # List files in the current directory
            print("Files in the current directory:")
            print("\n".join(os.listdir(".")))
            return None
    finally:
        # Clean up
        if os.path.exists(output_file):
            os.remove(output_file)
        if os.path.exists(project_path):
            shutil.rmtree(project_path)


# Example usage
if __name__ == "__main__":
    # if len(sys.argv) != 4:
    #     print("Usage: python script.py <ghidra_path> <binary_path> <java_script_path>")
    #     sys.exit(1)

    # ghidra_path = sys.argv[1]
    # binary_path = sys.argv[2]
    # java_script_path = sys.argv[3]

    ghidra_path = "/opt/ghidra"
    binary_path = "/home/p4c0/dev/redb/test_files/hello"
    java_script_path = (
        "/opt/ghidra/Ghidra/Features/Base/ghidra_scripts/GhidraDecompilerScript.java"
    )

    functions = analyze_binary(ghidra_path, binary_path, java_script_path)

    if functions:
        print(f"Extracted functions from {binary_path}:")
        for func in functions:
            print(f"\nFunction: {func['name']}")
            print(f"Address: {func['address']}")
            print(f"Decompiled code:\n{func['decompiled']}")
    else:
        print("Failed to extract functions.")