Olaf Ronneberger

68 papers A* 3A 3B 2Journal 24Unranked 34

Year	Rank	Type	Title / Venue / Authors
2021	J	`jnl`	Inferring a Continuous Distribution of Atom Coordinates from Cryo-EM Images using VAEs. CoRR Dan Rosenbaum, Marta Garnelo, Michal Zielinski, Charlie Beattie, Ellen Clancy, Andrea Huber, Pushmeet Kohli, Andrew W. Senior, John Jumper, Carl Doersch, S. M. Ali Eslami, Olaf Ronneberger, Jonas Adler
2021	J	`jnl`	The Medical Segmentation Decathlon. CoRR Michela Antonelli, Annika Reinke, Spyridon Bakas, Keyvan Farahani, Annette Kopp-Schneider, Bennett A. Landman, Geert Litjens, Bjoern H. Menze, Olaf Ronneberger, Ronald M. Summers, Bram van Ginneken, Michel Bilello, Patrick Bilic, Patrick Ferdinand Christ, Richard K. G. Do, Marc Gollub, Stephan Heckers, Henkjan J. Huisman, William R. Jarnagin, Maureen McHugo, Sandy Napel, Jennifer Goli-Pernicka, Kawal S. Rhode, Catalina Tobon-Gomez, Eugene Vorontsov, James A. Meakin, Sébastien Ourselin, Manuel Wiesenfarth, Pablo Arbeláez, Byeonguk Bae, Sihong Chen, Laura Alexandra Daza, Jianjiang Feng, Baochun He, Fabian Isensee, Yuanfeng Ji, Fucang Jia, Namkug Kim, Ildoo Kim, Dorit Merhof, Akshay Pai, BeomHee Park, Mathias Perslev, Ramin Rezaiifar, Oliver Rippel, Ignacio Sarasua, Wei Shen, Jaemin Son, Christian Wachinger, Liansheng Wang, Yan Wang, Yingda Xia, Daguang Xu, Zhanwei Xu, Yefeng Zheng, Amber L. Simpson, Lena Maier-Hein, M. Jorge Cardoso
2020	J	`jnl`	Contrastive Training for Improved Out-of-Distribution Detection. CoRR Jim Winkens, Rudy Bunel, Abhijit Guha Roy, Robert Stanforth, Vivek Natarajan, Joseph R. Ledsam, Patricia MacWilliams, Pushmeet Kohli, Alan Karthikesalingam, Simon Kohl, A. Taylan Cemgil, S. M. Ali Eslami, Olaf Ronneberger
2019	J	`jnl`	A Hierarchical Probabilistic U-Net for Modeling Multi-Scale Ambiguities. CoRR Simon A. A. Kohl, Bernardino Romera-Paredes, Klaus H. Maier-Hein, Danilo Jimenez Rezende, S. M. Ali Eslami, Pushmeet Kohli, Andrew Zisserman, Olaf Ronneberger
2019	J	`jnl`	A large annotated medical image dataset for the development and evaluation of segmentation algorithms. CoRR Amber L. Simpson, Michela Antonelli, Spyridon Bakas, Michel Bilello, Keyvan Farahani, Bram van Ginneken, Annette Kopp-Schneider, Bennett A. Landman, Geert Litjens, Bjoern H. Menze, Olaf Ronneberger, Ronald M. Summers, Patrick Bilic, Patrick Ferdinand Christ, Richard K. G. Do, Marc Gollub, Jennifer Golia-Pernicka, Stephan Heckers, William R. Jarnagin, Maureen McHugo, Sandy Napel, Eugene Vorontsov, Lena Maier-Hein, M. Jorge Cardoso
2018	A*	`conf`	A Probabilistic U-Net for Segmentation of Ambiguous Images. NeurIPS Simon Kohl, Bernardino Romera-Paredes, Clemens Meyer, Jeffrey De Fauw, Joseph R. Ledsam, Klaus H. Maier-Hein, S. M. Ali Eslami, Danilo Jimenez Rezende, Olaf Ronneberger
2018	J	`jnl`	A Probabilistic U-Net for Segmentation of Ambiguous Images. CoRR Simon A. A. Kohl, Bernardino Romera-Paredes, Clemens Meyer, Jeffrey De Fauw, Joseph R. Ledsam, Klaus H. Maier-Hein, S. M. Ali Eslami, Danilo Jimenez Rezende, Olaf Ronneberger
2018	J	`jnl`	Deep learning to achieve clinically applicable segmentation of head and neck anatomy for radiotherapy. CoRR Stanislav Nikolov, Sam Blackwell, Ruheena Mendes, Jeffrey De Fauw, Clemens Meyer, Cían Hughes, Harry Askham, Bernardino Romera-Paredes, Alan Karthikesalingam, Carlton Chu, Dawn Carnell, Cheng Boon, Derek D'Souza, Syed Ali Moinuddin, Kevin Sullivan, DeepMind Radiographer Consortium, Hugh Montgomery, Geraint Rees, Ricky Sharma, Mustafa Suleyman, Trevor Back, Joseph R. Ledsam, Olaf Ronneberger
2018	—	`conf`	ISOODL: Instance segmentation of overlapping biological objects using deep learning. ISBI Anton Böhm, Annekathrin Ucker, Tim Jager, Olaf Ronneberger, Thorsten Falk
2017	J	`jnl`	Gland segmentation in colon histology images: The glas challenge contest. Medical Image Anal. Korsuk Sirinukunwattana, Josien P. W. Pluim, Hao Chen, Xiaojuan Qi, Pheng-Ann Heng, Yun Bo Guo, Li Yang Wang, Bogdan J. Matuszewski, Elia Bruni, Urko Sanchez, Anton Böhm, Olaf Ronneberger, Bassem Ben Cheikh, Daniel Racoceanu, Philipp Kainz, Michael Pfeiffer, Martin Urschler, David R. J. Snead, Nasir M. Rajpoot
2017	—	`conf`	Invited Talk: U-Net Convolutional Networks for Biomedical Image Segmentation. Bildverarbeitung für die Medizin Olaf Ronneberger
2017	J	`jnl`	Spatiotemporal Deformable Prototypes for Motion Anomaly Detection. Int. J. Comput. Vis. Robert Bensch, Nico Scherf, Jan Huisken, Thomas Brox, Olaf Ronneberger
2016	—	`conf`	3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation. MICCAI (2) Özgün Çiçek, Ahmed Abdulkadir, Soeren S. Lienkamp, Thomas Brox, Olaf Ronneberger
2016	J	`jnl`	3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation. CoRR Özgün Çiçek, Ahmed Abdulkadir, Soeren S. Lienkamp, Thomas Brox, Olaf Ronneberger
2016	J	`jnl`	A benchmark for comparison of dental radiography analysis algorithms. Medical Image Anal. Ching-Wei Wang, Cheng-Ta Huang, Jia-Hong Lee, Chung-Hsing Li, Sheng-Wei Chang, Ming-Jhih Siao, Tat-Ming Lai, Bulat Ibragimov, Tomaz Vrtovec, Olaf Ronneberger, Philipp Fischer, Timothy F. Cootes, Claudia Lindner
2016	J	`jnl`	Applying machine learning to automated segmentation of head and neck tumour volumes and organs at risk on radiotherapy planning CT and MRI scans. F1000Research Carlton Chu, Jeffrey De Fauw, Nenad Tomasev, Bernardino Romera-Paredes, Cían Hughes, Joseph R. Ledsam, Trevor Back, Hugh Montgomery, Geraint Rees, Rosalind Raine, Kevin Sullivan, Syed Ali Moinuddin, Derek D'Souza, Olaf Ronneberger, Ruheena Mendes, Julien Cornebise
2016	J	`jnl`	Automated analysis of retinal imaging using machine learning techniques for computer vision. F1000Research Jeffrey De Fauw, Pearse A. Keane, Nenad Tomasev, Daniel Visentin, George van den Driessche, Mike Johnson, Cían Hughes, Carlton Chu, Joseph R. Ledsam, Trevor Back, Tunde Peto, Geraint Rees, Hugh Montgomery, Rosalind Raine, Olaf Ronneberger, Julien Cornebise
2016	J	`jnl`	Gland Segmentation in Colon Histology Images: The GlaS Challenge Contest. CoRR Korsuk Sirinukunwattana, Josien P. W. Pluim, Hao Chen, Xiaojuan Qi, Pheng-Ann Heng, Yun Bo Guo, Li Yang Wang, Bogdan J. Matuszewski, Elia Bruni, Urko Sanchez, Anton Böhm, Olaf Ronneberger, Bassem Ben Cheikh, Daniel Racoceanu, Philipp Kainz, Michael Pfeiffer, Martin Urschler, David R. J. Snead, Nasir M. Rajpoot
2015	—	`conf`	Cell segmentation and tracking in phase contrast images using graph cut with asymmetric boundary costs. ISBI Robert Bensch, Olaf Ronneberger
2015	A	`conf`	Spatiotemporal Deformable Prototypes for Motion Anomaly Detection. BMVC Robert Bensch, Thomas Brox, Olaf Ronneberger
2015	J	`jnl`	Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge. NeuroImage Esther E. Bron, Marion Smits, Wiesje M. van der Flier, Hugo Vrenken, Frederik Barkhof, Philip Scheltens, Janne M. Papma, Rebecca M. E. Steketee, Carolina Méndez Orellana, Rozanna Meijboom, Madalena Pinto, Joana R. Meireles, Carolina Garrett, António J. Bastos-Leite, Ahmed Abdulkadir, Olaf Ronneberger, Nicola Amoroso, Roberto Bellotti, David Cárdenas-Peña, Andrés Marino Álvarez-Meza, Chester V. Dolph, Khan M. Iftekharuddin, Simon F. Eskildsen, Pierrick Coupé, Vladimir S. Fonov, Katja Franke
2015	—	`conf`	U-Net: Convolutional Networks for Biomedical Image Segmentation. MICCAI (3) Olaf Ronneberger, Philipp Fischer, Thomas Brox
2015	J	`jnl`	U-Net: Convolutional Networks for Biomedical Image Segmentation. CoRR Olaf Ronneberger, Philipp Fischer, Thomas Brox
2014	—	`conf`	Accurate Detection in Volumetric Images Using Elastic Registration Based Validation. GCPR Dominic Mai, Jasmin Dürr, Klaus Palme, Olaf Ronneberger
2014	J	`jnl`	Correction of inter-scanner and within-subject variance in structural MRI based automated diagnosing. NeuroImage Daniel Kostro, Ahmed Abdulkadir, Alexandra Durr, Raymund Roos, Blair R. Leavitt, Hans J. Johnson, David M. Cash, Sarah J. Tabrizi, Rachael I. Scahill, Olaf Ronneberger, Stefan Klöppel
2014	A	`conf`	Improving Detection of Deformable Objects in Volumetric Data. BMVC Dominic Mai, Olaf Ronneberger
2014	—	`conf`	Optical flow guided cell segmentation and tracking in developing tissue. ISBI Kun Liu, Soeren S. Lienkamp, Asako Shindo, John B. Wallingford, Gerd Walz, Olaf Ronneberger
2014	—	`conf`	Reduction of confounding effects with voxel-wise Gaussian process regression in structural MRI. PRNI Ahmed Abdulkadir, Olaf Ronneberger, Sarah J. Tabrizi, Stefan Klöppel
2014	J	`jnl`	Rotation-Invariant HOG Descriptors Using Fourier Analysis in Polar and Spherical Coordinates. Int. J. Comput. Vis. Kun Liu, Henrik Skibbe, Thorsten Schmidt, Thomas Blein, Klaus Palme, Thomas Brox, Olaf Ronneberger
2013	A*	`conf`	Blind Deconvolution of Widefield Fluorescence Microscopic Data by Regularization of the Optical Transfer Function (OTF). CVPR Margret Keuper, Thorsten Schmidt, Maja Temerinac-Ott, Jan Padeken, Patrick Heun, Olaf Ronneberger, Thomas Brox
2013	—	`conf`	Discriminative Detection and Alignment in Volumetric Data. GCPR Dominic Mai, Philipp Fischer, Thomas Blein, Jasmin Dürr, Klaus Palme, Thomas Brox, Olaf Ronneberger
2013	—	`conf`	Joint 3D cell segmentation and classification in the Arabidopsis root using energy minimization and shape priors. ISBI Kun Liu, Thorsten Schmidt, Thomas Blein, Jasmin Dürr, Klaus Palme, Olaf Ronneberger
2013	J	`jnl`	Variational attenuation correction in two-view confocal microscopy. BMC Bioinform. Thorsten Schmidt, Jasmin Dürr, Margret Keuper, Thomas Blein, Klaus Palme, Olaf Ronneberger
2013	—	`conf`	Variational attenuation correction of two-view confocal microscopic recordings. ISBI Thorsten Schmidt, Jasmin Dürr, Margret Keuper, Thomas Blein, Klaus Palme, Olaf Ronneberger
2012	A*	`conf`	2D/3D rotation-invariant detection using equivariant filters and kernel weighted mapping. CVPR Kun Liu, Qing Wang, Wolfgang Driever, Olaf Ronneberger
2012	—	`conf`	Blind deconvolution with PSF regularization for wide-field microscopy. ISBI Margret Keuper, Maja Temerinac-Ott, Jan Padeken, Patrick Heun, Thomas Brox, Hans Burkhardt, Olaf Ronneberger
2012	J	`jnl`	Fast Rotation Invariant 3D Feature Computation Utilizing Efficient Local Neighborhood Operators. IEEE Trans. Pattern Anal. Mach. Intell. Henrik Skibbe, Marco Reisert, Thorsten Schmidt, Thomas Brox, Olaf Ronneberger, Hans Burkhardt
2012	—	`conf`	Modeling of Sparsely Sampled Tubular Surfaces Using Coupled Curves. DAGM/OAGM Symposium Thorsten Schmidt, Margret Keuper, Taras Pasternak, Klaus Palme, Olaf Ronneberger
2012	J	`jnl`	Multiview Deblurring for 3-D Images from Light-Sheet-Based Fluorescence Microscopy. IEEE Trans. Image Process. Maja Temerinac-Ott, Olaf Ronneberger, Peter Ochs, Wolfgang Driever, Thomas Brox, Hans Burkhardt
2011	A	`conf`	3D Rotation-Invariant Description from Tensor Operation on Spherical HOG Field. BMVC Kun Liu, Henrik Skibbe, Thorsten Schmidt, Thomas Blein, Klaus Palme, Olaf Ronneberger
2011	J	`jnl`	A comparison of different automated methods for the detection of white matter lesions in MRI data. NeuroImage Stefan Klöppel, Ahmed Abdulkadir, Stathis Hadjidemetriou, Sabine Issleib, Lars Frings, Thao Nguyen Thanh, Irina Mader, Stefan J. Teipel, Michael Hüll, Olaf Ronneberger
2011	—	`conf`	Alpha helix prediction based on Metropolis-Hastings sampling. ISBI Lingyu Ma, Marco Reisert, Christophe Wirth, Carola Hunte, Olaf Ronneberger, Hans Burkhardt
2011	—	`conf`	Hierarchical Markov Random Fields for mast cell segmentation in electron microscopic recordings. ISBI Margret Keuper, Thorsten Schmidt, Marta Rodriguez-Franco, Wolfgang Schamel, Thomas Brox, Hans Burkhardt, Olaf Ronneberger
2011	—	`conf`	Reusable modules for high-content 3D and 4D image analysis. ISBI Olaf Ronneberger
2011	—	`conf`	Spatially-variant Lucy-Richardson deconvolution for multiview fusion of microscopical 3D images. ISBI Maja Temerinac-Ott, Olaf Ronneberger, Roland Nitschke, Wolfgang Driever, Hans Burkhardt
2011	—	`conf`	Spherical Bessel Filter for 3D object detection. ISBI Henrik Skibbe, Marco Reisert, Olaf Ronneberger, Hans Burkhardt
2010	B	`conf`	3D Deformable Surfaces with Locally Self-Adjusting Parameters - A Robust Method to Determine Cell Nucleus Shapes. ICPR Margret Keuper, Thorsten Schmidt, Jan Padeken, Patrick Heun, Klaus Palme, Hans Burkhardt, Olaf Ronneberger
2010	—	`conf`	3D Object Detection Using a Fast Voxel-Wise Local Spherical Fourier Tensor Transformation. DAGM-Symposium Henrik Skibbe, Marco Reisert, Thorsten Schmidt, Klaus Palme, Olaf Ronneberger, Hans Burkhardt
2010	J	`jnl`	Harmonic Filters for 3D Multichannel Data: Rotation Invariant Detection of Mitoses in Colorectal Cancer. IEEE Trans. Medical Imaging Matthias Schlachter, Marco Reisert, Corinna Herz, Fabienne Schlurmann, Silke Lassmann, Martin Werner, Hans Burkhardt, Olaf Ronneberger
2010	B	`conf`	Mean Shift Gradient Vector Flow: A Robust External Force Field for 3D Active Surfaces. ICPR Margret Keuper, Hans Burkhardt, Olaf Ronneberger, Jan Padeken, Patrick Heun
2010	—	`conf`	Semi-supervised Learning of Edge Filters for Volumetric Image Segmentation. DAGM-Symposium Margret Keuper, Robert Bensch, Karsten Voigt, Alexander Dovzhenko, Klaus Palme, Hans Burkhardt, Olaf Ronneberger
2009	—	`conf`	A 3D Active Surface Model for the Accurate Segmentation of ISVC (1) Margret Keuper, Jan Padeken, Patrick Heun, Hans Burkhardt, Olaf Ronneberger
2009	—	`conf`	Fast computation of 3D spherical Fourier harmonic descriptors - a complete orthonormal basis for a rotational invariant representation of three-dimensional objects. ICCV Workshops Henrik Skibbe, Qing Wang, Olaf Ronneberger, Hans Burkhardt, Marco Reisert
2009	—	`conf`	Image Analysis of Arabidopsis Trichome Patterning in 4D Confocal Datasets. ISBI Robert Bensch, Olaf Ronneberger, Bettina Greese, Christian Fleck, Katja Wester, Martin Hülskamp, Hans Burkhardt
2009	—	`conf`	Increasing the Dimension of Creativity in Rotation Invariant Feature Design Using 3D Tensorial Harmonics. DAGM-Symposium Henrik Skibbe, Marco Reisert, Olaf Ronneberger, Hans Burkhardt
2009	J	`jnl`	Rotational Invariance Based on Fourier Analysis in Polar and Spherical Coordinates. IEEE Trans. Pattern Anal. Mach. Intell. Qing Wang, Olaf Ronneberger, Hans Burkhardt
2009	—	`conf`	Using Lateral Coupled Snakes for Modeling the Contours of Worms. DAGM-Symposium Qing Wang, Olaf Ronneberger, Ekkehard Schulze, Ralf Baumeister, Hans Burkhardt
2008	—	`conf`	Fast and robust segmentation of spherical particles in volumetric data sets from brightfield microscopy. ISBI Olaf Ronneberger, Qing Wang, Hans Burkhardt
2007	—	`conf`	3D Invariants with High Robustness to Local Deformations for Automated Pollen Recognition. DAGM-Symposium Olaf Ronneberger, Qing Wang, Hans Burkhardt
2007	—	`—`	3D invariants for automated pollen recognition. Olaf Ronneberger
2007	—	`ch.`	3D-Invarianten zur automatischen Pollenerkennung [3D Invariants for Automated Pollen Recognition]. Ausgezeichnete Informatikdissertationen Olaf Ronneberger
2007	—	`conf`	A Fast and Reliable Coin Recognition System. DAGM-Symposium Marco Reisert, Olaf Ronneberger, Hans Burkhardt
2007	—	`conf`	Holomorphic Filters for Object Detection. DAGM-Symposium Marco Reisert, Olaf Ronneberger, Hans Burkhardt
2006	—	`conf`	Fast Scalar and Vectorial Grayscale Based Invariant Features for 3D Cell Nuclei Localization and Classification. DAGM-Symposium Janina Schulz, Thorsten Schmidt, Olaf Ronneberger, Hans Burkhardt, Taras Pasternak, Alexander Dovzhenko, Klaus Palme
2006	—	`conf`	Identifikation von Zellen in intaktem Gewebe. Bildverarbeitung für die Medizin Janis Fehr, Catharina Sauer, Haymo Kurz, Olaf Ronneberger, Hans Burkhardt
2005	—	`conf`	Self-learning Segmentation and Classification of Cell-Nuclei in 3D Volumetric Data Using Voxel-Wise Gray Scale Invariants. DAGM-Symposium Janis Fehr, Olaf Ronneberger, Haymo Kurz, Hans Burkhardt
2005	—	`conf`	Voxel-Wise Gray Scale Invariants for Simultaneous Segmentation and Classification. DAGM-Symposium Olaf Ronneberger, Janis Fehr, Hans Burkhardt
2002	—	`conf`	General-Purpose Object Recognition in 3D Volume Data Sets Using Gray-Scale Invariants --- Classification of Airborne Pollen-Grains Recorded with a Confocal Laser Scanning Microscope. ICPR (2) Olaf Ronneberger, Hans Burkhardt, Eckart Schultz