Oladimeji Farri

56 papers A* 3B 1Misc 3Journal 17Unranked 30

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Automated vulnerability evaluation with large language models and vulnerability ontologies. AI Mag. Rikhiya Ghosh, Hans-Martin von Stockhausen, Martin Schmitt, Vasile George Marica, Sanjeev Kumar Karn, Oladimeji Farri
2025	J	`jnl`	CVE-LLM : Ontology-Assisted Automatic Vulnerability Evaluation Using Large Language Models. CoRR Rikhiya Ghosh, Hans-Martin von Stockhausen, Martin Schmitt, Vasile George Marica, Sanjeev Kumar Karn, Oladimeji Farri
2025	A*	`conf`	CVE-LLM: Ontology-Assisted Automatic Vulnerability Evaluation Using Large Language Models. AAAI Rikhiya Ghosh, Hans-Martin von Stockhausen, Martin Schmitt, Vasile George Marica, Sanjeev Kumar Karn, Oladimeji Farri
2025	J	`jnl`	Multilingual Clinical NER for Diseases and Medications Recognition in Cardiology Texts using BERT Embeddings. CoRR Manuela Daniela Danu, George Marica, Constantin Suciu, Lucian Mihai Itu, Oladimeji Farri
2024	J	`jnl`	CVE-LLM : Automatic vulnerability evaluation in medical device industry using large language models. CoRR Rikhiya Ghosh, Oladimeji Farri, Hans-Martin von Stockhausen, Martin Schmitt, George Marica
2024	—	`conf`	Fusion of Domain-Adapted Vision and Language Models for Medical Visual Question Answering. ClinicalNLP@NAACL Cuong Nhat Ha, Shima Asaadi, Sanjeev Kumar Karn, Oladimeji Farri, Tobias Heimann, Thomas A. Runkler
2024	J	`jnl`	Fusion of Domain-Adapted Vision and Language Models for Medical Visual Question Answering. CoRR Cuong Nhat Ha, Shima Asaadi, Sanjeev Kumar Karn, Oladimeji Farri, Tobias Heimann, Thomas A. Runkler
2024	—	`conf`	Multilingual Clinical NER for Diseases and Medications Recognition in Cardiology Texts using BERT Embeddings. CLEF (Working Notes) Manuela Daniela Danu, George Marica, Constantin Suciu, Lucian Mihai Itu, Oladimeji Farri
2023	J	`jnl`	General-Purpose vs. Domain-Adapted Large Language Models for Extraction of Data from Thoracic Radiology Reports. CoRR Ali H. Dhanaliwala, Rikhiya Ghosh, Sanjeev Kumar Karn, Poikavila Ullaskrishnan, Oladimeji Farri, Dorin Comaniciu, Charles E. Kahn
2023	J	`jnl`	Generation of Radiology Findings in Chest X-Ray by Leveraging Collaborative Knowledge. CoRR Manuela Daniela Danu, Vasile George Marica, Sanjeev Kumar Karn, Bogdan Georgescu, Awais Mansoor, Florin C. Ghesu, Lucian Mihai Itu, Constantin Suciu, Sasa Grbic, Oladimeji Farri, Dorin Comaniciu
2023	—	`conf`	RadLing: Towards Efficient Radiology Report Understanding. ACL (industry) Rikhiya Ghosh, Oladimeji Farri, Sanjeev Kumar Karn, Manuela Daniela Danu, Ramya Vunikili, Larisa Micu
2023	J	`jnl`	RadLing: Towards Efficient Radiology Report Understanding. CoRR Rikhiya Ghosh, Sanjeev Kumar Karn, Manuela Daniela Danu, Larisa Micu, Ramya Vunikili, Oladimeji Farri
2023	—	`conf`	shs-nlp at RadSum23: Domain-Adaptive Pre-training of Instruction-tuned LLMs for Radiology Report Impression Generation. BioNLP@ACL Sanjeev Kumar Karn, Rikhiya Ghosh, Kusuma P, Oladimeji Farri
2023	J	`jnl`	shs-nlp at RadSum23: Domain-Adaptive Pre-training of Instruction-tuned LLMs for Radiology Report Impression Generation. CoRR Sanjeev Kumar Karn, Rikhiya Ghosh, Kusuma P, Oladimeji Farri
2022	—	`conf`	Differentiable Multi-Agent Actor-Critic for Multi-Step Radiology Report Summarization. ACL (1) Sanjeev Kumar Karn, Ning Liu, Hinrich Schütze, Oladimeji Farri
2022	J	`jnl`	Differentiable Multi-Agent Actor-Critic for Multi-Step Radiology Report Summarization. CoRR Sanjeev Kumar Karn, Ning Liu, Hinrich Schütze, Oladimeji Farri
2020	J	`jnl`	Assertion Detection in Multi-Label Clinical Text using Scope Localization. CoRR Rajeev Bhatt Ambati, Ahmed Ada Hanifi, Ramya Vunikili, Puneet Sharma, Oladimeji Farri
2020	—	`conf`	Clinical NER using Spanish BERT Embeddings. IberLEF@SEPLN Ramya Vunikili, Supriya H. N, Vasile George Marica, Oladimeji Farri
2019	—	`ch.`	Clinical Natural Language Processing with Deep Learning. Data Science for Healthcare Sadid A. Hasan, Oladimeji Farri
2019	J	`jnl`	Comparative effectiveness of convolutional neural network (CNN) and recurrent neural network (RNN) architectures for radiology text report classification. Artif. Intell. Medicine Imon Banerjee, Yuan Ling, Matthew C. Chen, Sadid A. Hasan, Curtis P. Langlotz, Nathaniel Moradzadeh, Brian E. Chapman, Timothy Amrhein, David A. Mong, Daniel L. Rubin, Oladimeji Farri, Matthew P. Lungren
2018	—	`conf`	DR-BiLSTM: Dependent Reading Bidirectional LSTM for Natural Language Inference. NAACL-HLT Reza Ghaeini, Sadid A. Hasan, Vivek V. Datla, Joey Liu, Kathy Lee, Ashequl Qadir, Yuan Ling, Aaditya Prakash, Xiaoli Z. Fern, Oladimeji Farri
2018	J	`jnl`	DR-BiLSTM: Dependent Reading Bidirectional LSTM for Natural Language Inference. CoRR Reza Ghaeini, Sadid A. Hasan, Vivek V. Datla, Joey Liu, Kathy Lee, Ashequl Qadir, Yuan Ling, Aaditya Prakash, Xiaoli Z. Fern, Oladimeji Farri
2018	—	`conf`	Overview of ImageCLEF 2018 Medical Domain Visual Question Answering Task. CLEF (Working Notes) Sadid A. Hasan, Yuan Ling, Oladimeji Farri, Joey Liu, Henning Müller, Matthew P. Lungren
2018	—	`conf`	Overview of ImageCLEF 2018: Challenges, Datasets and Evaluation. CLEF Bogdan Ionescu, Henning Müller, Mauricio Villegas, Alba Garcia Seco de Herrera, Carsten Eickhoff, Vincent Andrearczyk, Yashin Dicente Cid, Vitali Liauchuk, Vassili Kovalev, Sadid A. Hasan, Yuan Ling, Oladimeji Farri, Joey Liu, Matthew P. Lungren, Duc-Tien Dang-Nguyen, Luca Piras, Michael Riegler, Liting Zhou, Mathias Lux, Cathal Gurrin
2018	—	`ed.`	Proceedings of the 3rd International Workshop on Knowledge Discovery in Healthcare Data co-located with the 27th International Joint Conference on Artificial Intelligence and the 23rd European Conference on Artificial Intelligence (IJCAI-ECAI 2018), Stockholm, Schweden, July 13, 2018. KDH@IJCAI Kerstin Bach, Razvan C. Bunescu, Oladimeji Farri, Aili Guo, Sadid A. Hasan, Zina M. Ibrahim, Cindy Marling, Jesse Raffa, Jonathan Rubin, Honghan Wu
2018	—	`conf`	Towards Dataset Creation And Establishing Baselines for Sentence-level Neural Clinical Paraphrase Generation and Simplification. KDH@IJCAI Viraj Adduru, Sadid A. Hasan, Joey Liu, Yuan Ling, Vivek V. Datla, Ashequl Qadir, Oladimeji Farri
2017	—	`conf`	A Hybrid Approach to Precision Medicine-related Biomedical Article Retrieval and Clinical Trial Matching. TREC Yuan Ling, Sadid A. Hasan, Michele Filannino, Kevin P. Buchan, Kahyun Lee, Joey Liu, William Boag, Di Jin, Özlem Uzuner, Kathy Lee, Vivek V. Datla, Ashequl Qadir, Oladimeji Farri
2017	—	`conf`	A statistics and UMLS-based tool for assisted semantic annotation of Brazilian clinical documents. BIBM Lucas E. S. Oliveira, Caroline P. Gebeluca, Adalniza Moura Pucca da Silva, Claudia M. C. Moro, Sadid A. Hasan, Oladimeji Farri
2017	A*	`conf`	Adverse Drug Event Detection in Tweets with Semi-Supervised Convolutional Neural Networks. WWW Kathy Lee, Ashequl Qadir, Sadid A. Hasan, Vivek V. Datla, Aaditya Prakash, Joey Liu, Oladimeji Farri
2017	—	`conf`	Attention-Based Medical Caption Generation with Image Modality Classification and Clinical Concept Mapping. CLEF Sadid A. Hasan, Yuan Ling, Joey Liu, Rithesh Sreenivasan, Shreya Anand, Tilak Raj Arora, Vivek V. Datla, Kathy Lee, Ashequl Qadir, Christine Leon Swisher, Oladimeji Farri
2017	—	`conf`	Automated clinical diagnosis: The role of content in various sections of a clinical document. BIBM Vivek V. Datla, Sadid A. Hasan, Ashequl Qadir, Kathy Lee, Yuan Ling, Joey Liu, Oladimeji Farri
2017	A*	`conf`	Condensed Memory Networks for Clinical Diagnostic Inferencing. AAAI Aaditya Prakash, Siyuan Zhao, Sadid A. Hasan, Vivek V. Datla, Kathy Lee, Ashequl Qadir, Joey Liu, Oladimeji Farri
2017	—	`conf`	Diagnostic Inferencing via Improving Clinical Concept Extraction with Deep Reinforcement Learning: A Preliminary Study. MLHC Yuan Ling, Sadid A. Hasan, Vivek V. Datla, Ashequl Qadir, Kathy Lee, Joey Liu, Oladimeji Farri
2017	—	`conf`	Extracting and Normalizing Adverse Drug Reactions from Drug Labels. TAC Carson Tao, Kahyun Lee, Michele Filannino, Kevin Buchan, Kathy Lee, Tilak Raj Arora, Joey Liu, Oladimeji Farri, Özlem Uzuner
2017	—	`conf`	Learning to Diagnose: Assimilating Clinical Narratives using Deep Reinforcement Learning. IJCNLP(1) Yuan Ling, Sadid A. Hasan, Vivek Varma Datla, Ashequl Qadir, Kathy Lee, Joey Liu, Oladimeji Farri
2017	—	`conf`	Medical Concept Normalization for Online User-Generated Texts. ICHI Kathy Lee, Sadid A. Hasan, Oladimeji Farri, Alok N. Choudhary, Ankit Agrawal
2017	—	`conf`	Open domain real-time question answering based on asynchronous multiperspective context-driven retrieval and neural paraphrasing. TREC Vivek V. Datla, Tilak Raj Arora, Joey Liu, Viraj Adduru, Sadid A. Hasan, Kathy Lee, Ashequl Qadir, Yuan Ling, Aaditya Prakash, Oladimeji Farri
2017	—	`conf`	PRNA at ImageCLEF 2017 Caption Prediction and Concept Detection Tasks. CLEF (Working Notes) Sadid A. Hasan, Yuan Ling, Joey Liu, Rithesh Sreenivasan, Shreya Anand, Tilak Raj Arora, Vivek V. Datla, Kathy Lee, Ashequl Qadir, Christine Leon Swisher, Oladimeji Farri
2017	—	`conf`	Recognizing Tweet Relevance with Profile-specific and Profile-independent Supervised Models. TREC Kathy Lee, Ashequl Qadir, Yuan Ling, Joey Liu, Sadid A. Hasan, Vivek V. Datla, Aaditya Prakash, Oladimeji Farri
2016	—	`conf`	Assorted Textual Features and Dynamic Push Strategies for Real-time Tweet Notification. TREC Kathy Lee, Ashequl Qadir, Vivek V. Datla, Sadid A. Hasan, Joey Liu, Aaditya Prakash, Oladimeji Farri
2016	—	`conf`	Clinical Question Answering using Key-Value Memory Networks and Knowledge Graph. TREC Sadid A. Hasan, Siyuan Zhao, Vivek V. Datla, Joey Liu, Kathy Lee, Ashequl Qadir, Aaditya Prakash, Oladimeji Farri
2016	J	`jnl`	Condensed Memory Networks for Clinical Diagnostic Inferencing. CoRR Aaditya Prakash, Siyuan Zhao, Sadid A. Hasan, Vivek V. Datla, Kathy Lee, Ashequl Qadir, Joey Liu, Oladimeji Farri
2016	Misc	`conf`	Does Section Order Affect Physicians' Experiences Reviewing Ambulatory Progress Notes? AMIA Gretchen M. Hultman, Jenna L. Marquard, Osadebamwen Ighile, Oladimeji Farri, Elizabeth Lindemann, Elliot G. Arsoniadis, Serguei V. S. Pakhomov, Genevieve B. Melton
2016	—	`conf`	Neural Clinical Paraphrase Generation with Attention. ClinicalNLP@COLING 2016 Sadid A. Hasan, Bo Liu, Joey Liu, Ashequl Qadir, Kathy Lee, Vivek V. Datla, Aaditya Prakash, Oladimeji Farri
2016	B	`conf`	Neural Paraphrase Generation with Stacked Residual LSTM Networks. COLING Aaditya Prakash, Sadid A. Hasan, Kathy Lee, Vivek V. Datla, Ashequl Qadir, Joey Liu, Oladimeji Farri
2016	J	`jnl`	Neural Paraphrase Generation with Stacked Residual LSTM Networks. CoRR Aaditya Prakash, Sadid A. Hasan, Kathy Lee, Vivek V. Datla, Ashequl Qadir, Joey Liu, Oladimeji Farri
2016	—	`conf`	Open Domain Real-Time Question Answering Based on Semantic and Syntactic Question Similarity. TREC Vivek V. Datla, Sadid A. Hasan, Joey Liu, Yassine Benajiba, Kathy Lee, Ashequl Qadir, Aaditya Prakash, Oladimeji Farri
2015	Misc	`conf`	Drug Database Refinement Using Machine Learning and Text Analysis. AMIA Reza Sharifi Sedeh, Xianshu Zhu, Yugang Jia, Joey Liu, Oladimeji Farri, Daniel Elgort
2015	—	`conf`	Exploiting Neural Embeddings for Social Media Data Analysis. TREC Sadid A. Hasan, Yuan Ling, Joey Liu, Oladimeji Farri
2015	—	`conf`	Ontology-Driven Semantic Search for Brazilian Portuguese Clinical Notes. MedInfo Sadid A. Hasan, Xianshu Zhu, Joey Liu, Claudia Maria Cabral Moro Barra, Lucas E. S. Oliveira, Oladimeji Farri
2015	—	`conf`	Using Neural Embeddings for Diagnostic Inferencing in Clinical Question Answering. TREC Sadid A. Hasan, Yuan Ling, Joey Liu, Oladimeji Farri
2014	—	`conf`	A Hybrid Approach to Clinical Question Answering. TREC Sadid A. Hasan, Xianshu Zhu, Yao Dong, Joey Liu, Oladimeji Farri
2013	J	`jnl`	Effects of time constraints on clinician-computer interaction: A study on information synthesis from EHR clinical notes. J. Biomed. Informatics Oladimeji Farri, Karen A. Monsen, Serguei V. S. Pakhomov, David S. Pieczkiewicz, Stuart M. Speedie, Genevieve B. Melton
2012	Misc	`conf`	A Qualitative Analysis of EHR Clinical Document Synthesis by Clinicians. AMIA Oladimeji Farri, David S. Pieczkiewicz, Ahmed Rahman, Serguei V. S. Pakhomov, Terrence Adam, Genevieve B. Melton
2012	—	`conf`	Evaluating Effects of Public Health Nurse Home Visitng on Health Literacy for Immigrants and Refugees Using Standardized Nursing Terminology Data. Nursing Informatics Karen A. Monsen, Eunice M. Areba, David M. Radosevich, Joan K. Brandt, Amy B. Lytton, Madeleine J. Kerr, Karen E. Johnson, Oladimeji Farri, Karen S. Martin
2012	J	`jnl`	Feasibility of encoding the Institute for Clinical Systems Improvement Depression Guideline using the Omaha System. J. Biomed. Informatics Karen A. Monsen, Claire Neely, Gary Oftedahl, Madeleine J. Kerr, Pam Pietruszewski, Oladimeji Farri