Oguz Selvitopi

36 papers A 8B 3Journal 22Unranked 2

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A Flexible Forwarding Scheme to Improve Latency-Bound Irregular P2P Communication in MPI. IEEE Trans. Parallel Distributed Syst. Oguz Selvitopi, Nabil Abubaker, Erkin Aydin, Cevdet Aykanat
2025	J	`jnl`	Fast Algorithms for Scheduling Many-body Correlation Functions on Accelerators. CoRR Oguz Selvitopi, M. Emin Ozturk, Jie Chen, Ponnuswamy Sadayappan, Robert G. Edwards, Aydin Buluç
2025	—	`conf`	Performance-Portable Symbolic Factorization through Common Graph Operations. SC Workshops Oguz Selvitopi, Xiaoye S. Li, Aydin Buluç
2025	J	`jnl`	Sparsity-Aware Communication for Distributed Graph Neural Network Training. CoRR Ujjaini Mukhopadhyay, Alok Tripathy, Oguz Selvitopi, Katherine A. Yelick, Aydin Buluç
2024	J	`jnl`	Evaluating the potential of disaggregated memory systems for HPC applications. Concurr. Comput. Pract. Exp. Nan Ding, Pieter Maris, Hai Ah Nam, Taylor L. Groves, Muaaz Gul Awan, LeAnn Lindsey, Christopher S. Daley, Oguz Selvitopi, Leonid Oliker, Nicholas J. Wright, Samuel Williams
2024	J	`jnl`	Exabiome: Advancing Microbial Science through Exascale Computing. Comput. Sci. Eng. Steven A. Hofmeyr, Aydin Buluç, Robert Riley, Rob Egan, Oguz Selvitopi, Leonid Oliker, Katherine A. Yelick, Migun Shakya, Brett Youtsey, Ariful Azad
2024	B	`conf`	Sparsity-Aware Communication for Distributed Graph Neural Network Training. ICPP Ujjaini Mukhopadhyay, Alok Tripathy, Oguz Selvitopi, Katherine A. Yelick, Aydin Buluç
2023	J	`jnl`	Evaluating the Potential of Disaggregated Memory Systems for HPC applications. CoRR Nan Ding, Pieter Maris, Hai Ah Nam, Taylor L. Groves, Muaaz Gul Awan, LeAnn Lindsey, Christopher S. Daley, Oguz Selvitopi, Leonid Oliker, Nicholas J. Wright, Samuel Williams
2023	J	`jnl`	Extreme-scale many-against-many protein similarity search. CoRR Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
2022	J	`jnl`	Combinatorial BLAS 2.0: Scaling Combinatorial Algorithms on Distributed-Memory Systems. IEEE Trans. Parallel Distributed Syst. Ariful Azad, Oguz Selvitopi, Md Taufique Hussain, John R. Gilbert, Aydin Buluç
2022	A	`conf`	Extreme-Scale Many-against-Many Protein Similarity Search. SC Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
2022	B	`conf`	Parallel Algorithms for Masked Sparse Matrix-Matrix Products. ICPP Srdan Milakovic, Oguz Selvitopi, Israt Nisa, Zoran Budimlic, Aydin Buluç
2022	B	`conf`	Parallel algorithms for masked sparse matrix-matrix products. PPoPP Srdan Milakovic, Oguz Selvitopi, Israt Nisa, Zoran Budimlic, Aydin Buluç
2021	J	`jnl`	Combinatorial BLAS 2.0: Scaling combinatorial algorithms on distributed-memory systems. CoRR Ariful Azad, Oguz Selvitopi, Md Taufique Hussain, John R. Gilbert, Aydin Buluç
2021	A	`conf`	Communication-Avoiding and Memory-Constrained Sparse Matrix-Matrix Multiplication at Extreme Scale. IPDPS Md Taufique Hussain, Oguz Selvitopi, Aydin Buluç, Ariful Azad
2021	A	`conf`	Distributed-memory parallel algorithms for sparse times tall-skinny-dense matrix multiplication. ICS Oguz Selvitopi, Benjamin Brock, Israt Nisa, Alok Tripathy, Katherine A. Yelick, Aydin Buluç
2021	J	`jnl`	EXAGRAPH: Graph and combinatorial methods for enabling exascale applications. Int. J. High Perform. Comput. Appl. Seher Acer, Ariful Azad, Erik G. Boman, Aydin Buluç, Karen D. Devine, S. M. Ferdous, Nitin Gawande, Sayan Ghosh, Mahantesh Halappanavar, Ananth Kalyanaraman, Arif Khan, Marco Minutoli, Alex Pothen, Sivasankaran Rajamanickam, Oguz Selvitopi, Nathan R. Tallent, Antonino Tumeo
2021	J	`jnl`	Fast shared-memory streaming multilevel graph partitioning. J. Parallel Distributed Comput. Nazanin Jafari, Oguz Selvitopi, Cevdet Aykanat
2021	J	`jnl`	Parallel Algorithms for Masked Sparse Matrix-Matrix Products. CoRR Srdan Milakovic, Oguz Selvitopi, Israt Nisa, Zoran Budimlic, Aydin Buluç
2021	A	`conf`	Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly. IPDPS Giulia Guidi, Oguz Selvitopi, Marquita Ellis, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
2020	A	`conf`	A High-Throughput Solver for Marginalized Graph Kernels on GPU. IPDPS Yu-Hang Tang, Oguz Selvitopi, Doru-Thom Popovici, Aydin Buluç
2020	J	`jnl`	ADEPT: a domain independent sequence alignment strategy for gpu architectures. BMC Bioinform. Muaaz G. Awan, Jack Deslippe, Aydin Buluç, Oguz Selvitopi, Steven A. Hofmeyr, Leonid Oliker, Katherine A. Yelick
2020	J	`jnl`	Communication-Avoiding and Memory-Constrained Sparse Matrix-Matrix Multiplication at Extreme Scale. CoRR Md Taufique Hussain, Oguz Selvitopi, Aydin Buluç, Ariful Azad
2020	—	`conf`	Considerations for a Distributed GraphBLAS API. IPDPS Workshops Benjamin Brock, Aydin Buluç, Timothy G. Mattson, Scott McMillan, José E. Moreira, Roger Pearce, Oguz Selvitopi, Trevor Steil
2020	J	`jnl`	Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices. CoRR Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, Aydin Buluç
2020	A	`conf`	Distributed many-to-many protein sequence alignment using sparse matrices. SC Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, Aydin Buluç
2020	A	`conf`	Optimizing High Performance Markov Clustering for Pre-Exascale Architectures. IPDPS Oguz Selvitopi, Md Taufique Hussain, Ariful Azad, Aydin Buluç
2020	J	`jnl`	Optimizing High Performance Markov Clustering for Pre-Exascale Architectures. CoRR Oguz Selvitopi, Md Taufique Hussain, Ariful Azad, Aydin Buluç
2020	J	`jnl`	Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly. CoRR Giulia Guidi, Oguz Selvitopi, Marquita Ellis, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
2020	J	`jnl`	The Parallelism Motifs of Genomic Data Analysis. CoRR Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker
2019	J	`jnl`	A High-Throughput Solver for Marginalized Graph Kernels on GPU. CoRR Yu-Hang Tang, Oguz Selvitopi, Doru Popovici, Aydin Buluç
2019	J	`jnl`	Locality-aware and load-balanced static task scheduling for MapReduce. Future Gener. Comput. Syst. Oguz Selvitopi, Gunduz Vehbi Demirci, Ata Turk, Cevdet Aykanat
2019	A	`conf`	Regularizing irregularly sparse point-to-point communications. SC Oguz Selvitopi, Cevdet Aykanat
2018	J	`jnl`	Optimizing nonzero-based sparse matrix partitioning models via reducing latency. J. Parallel Distributed Comput. Seher Acer, Oguz Selvitopi, Cevdet Aykanat
2018	J	`jnl`	Partitioning Models for Scaling Parallel Sparse Matrix-Matrix Multiplication. ACM Trans. Parallel Comput. Kadir Akbudak, Oguz Selvitopi, Cevdet Aykanat
2016	—	`—`	Latency-centric models and methods for scaling sparse operations (Seyrek işlemlerin ölçeklenebilmesi için gecikim-merkezli model ve yöntemler) Oguz Selvitopi