Oguz Akbilgic

17 papers Journal 11Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
npj Digit. Medicine
Brian J. Wells, Hieu M. Nguyen, Andrew McWilliams, Matt Pallini, Amy Bovi, Andrew Kuzma, Justin Kramer, Shih-Hsiung Chou, Timothy Hetherington, Patricia Corn, Yhenneko J. Taylor, Audrey Cuison, Mary Gagen, McKenzie Isreal, Oguz Akbilgic, Katie Barr, Alicia Bowers, Rikki Caffrey, Michael S. Carroll, Matthew Cirullo, Stephen M. Downs, Natalie Hardy, Jason Heuay, Kristina Katzovitz, Eric Kirkendall, Elsie Lindgren, Lindsey Lonergan, Elissa McKinley, Nicholas M. Pajewski, Laura Sak-Castellano, Erika Setliff, Gabe Wright
2022 J jnl
Int. J. Medical Informatics
Liam Butler, Ibrahim Karabayir, Mohammad Samie Tootooni, Majid Afshar, Ari Goldberg, Oguz Akbilgic
2021 J jnl
CoRR
Oguz Akbilgic, Eun Kyong Shin, Arash Shaban-Nejad
2021 J jnl
IEEE Trans. Neural Networks Learn. Syst.
Ibrahim Karabayir, Oguz Akbilgic, Nihat Tas
2020 J jnl
BMC Medical Informatics Decis. Mak.
Ibrahim Karabayir, Samuel M. Goldman, Suguna Pappu, Oguz Akbilgic
2019 J jnl
IEEE J. Biomed. Health Informatics
Jacob R. Sutton, Ruhi Mahajan, Oguz Akbilgic, Rishikesan Kamaleswaran
2019 J jnl
Informatics
Oguz Akbilgic, Ramin Homayouni, Kevin Heinrich, Max Raymond Langham, Robert Lowell Davis
2018 conf
BHI
Ruhi Mahajan, Rishikesan Kamaleswaran, Oguz Akbilgic
2018 conf
EFMI-STC
Ruhi Mahajan, Eun Kyong Shin, Arash Shaban-Nejad, Max Raymond Langham, Michelle Y. Martin, Robert Lowell Davis, Oguz Akbilgic
2018 J jnl
npj Digit. Medicine
Eun Kyong Shin, Ruhi Mahajan, Oguz Akbilgic, Arash Shaban-Nejad
2017 conf
CRI
Teeradache Viangteeravat, Oguz Akbilgic, Robert L. Davis
2017 conf
CinC
Ruhi Mahajan, Rishikesan Kamaleswaran, John Andrew Howe, Oguz Akbilgic
2017 conf
DMAH@VLDB
Ruhi Mahajan, Rishikesan Kamaleswaran, Oguz Akbilgic
2017 J jnl
Int. J. Medical Informatics
Ruhi Mahajan, Teeradache Viangteeravat, Oguz Akbilgic
2014 J jnl
Stat. Comput.
Oguz Akbilgic, Hamparsum Bozdogan, M. Erdal Balaban
2013 conf
ECDA
Oguz Akbilgic, Hamparsum Bozdogan
2013 J jnl
Inf. Serv. Use
Hamparsum Bozdogan, Oguz Akbilgic
redb/extractors/decompiler/_archive/DecompileGhidra-old.py
← Index redb/extractors/decompiler/_archive/DecompileGhidra-old.py python
from hashlib import sha256
import inspect
from pathlib import Path
import subprocess
import json
import subprocess
import json
import os
import tempfile
import uuid
import shutil
import time

from dotenv import load_dotenv

from redb.extractors.enum import Tag
from redb.models.dataclasses import Decompiled
from redb.extractors.extractor import Extractor


class DecompileGhidra(Extractor):
    def __init__(
        self,
        filepath,
        log,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
    ):
        super().__init__(
            filepath, log, index_prefix, elastic_index, known_benign, known_malicious
        )
        self.log.debug(inspect.currentframe().f_code.co_name)
        self.elastic_index = self.index_prefix + "-ghidra"
        self.ghidra_path = "/opt/ghidra"
        self.java_script_path = (
            self.ghidra_path
            + "/Ghidra/Features/Base/ghidra_scripts/GhidraDecompilerScript.java"
        )
        self.decompiled = None
        load_dotenv()
        self.decompiled_folder = os.getenv("DECOMPILED_FOLDER", "/opt/decompiled")
        self.log.debug(f"Decompiled folder: {self.decompiled_folder}")

    def run_command(self, cmd, env=None):
        try:
            self.log.info(f"Starting command: {' '.join(cmd)}")
            start_time = time.time()
            TIMEOUT = 1200  # 20 minutes in seconds
            process = subprocess.Popen(
                cmd, env=env, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True
            )

            while True:
                output = process.stdout.readline()
                if output:
                    print(output.strip())
                if process.poll() is not None:
                    break
            try:
                stdout, stderr = process.communicate(timeout=TIMEOUT)
            except subprocess.TimeoutExpired:
                process.kill()
                self.log.error(f"Ghidra timed out after {TIMEOUT} seconds")
                # raise subprocess.TimeoutExpired(process.args, TIMEOUT)
                return None
            end_time = time.time()

            self.log.debug(
                f"Command finished. Execution time: {end_time - start_time:.2f} seconds"
            )
            self.log.debug(f"Return code: {process.returncode}")

            if process.returncode != 0:
                self.log.error(f"Error output:\n{stderr}")
                return None
            return stdout
        except Exception as e:
            self.log.error(f"Error running command {' '.join(cmd)}: {e}")
            return None

    def analyze_binary(self):
        self.log.debug(f"Ghidra path: {self.ghidra_path}")
        self.log.debug(f"Binary path: {self.filepath}")
        self.log.debug(f"Java script path: {self.java_script_path}")

        # Check if Java script exists
        if not os.path.exists(self.java_script_path):
            self.log.error(f"Error: Java script not found at {self.java_script_path}")
            return None

        # Set up environment variables
        env = os.environ.copy()
        java_home = "/usr/lib/jvm/java-17-openjdk-amd64"  # Adjust this path if needed
        env["JAVA_HOME"] = java_home
        env["PATH"] = f"{java_home}/bin:{env['PATH']}"
        env["LD_LIBRARY_PATH"] = f"{java_home}/lib:{env.get('LD_LIBRARY_PATH', '')}"
        env["DECOMPILED_FOLDER"] = self.decompiled_folder

        # Print environment variables for debugging
        self.log.debug(f"JAVA_HOME: {env['JAVA_HOME']}")
        self.log.debug(f"PATH: {env['PATH']}")
        self.log.debug(f"LD_LIBRARY_PATH: {env['LD_LIBRARY_PATH']}")

        # Check Ghidra installation
        analyzeHeadless_path = f"{self.ghidra_path}/support/analyzeHeadless"
        self.log.debug(
            f"analyzeHeadless exists: {os.path.exists(analyzeHeadless_path)}"
        )

        # Create a temporary project directory
        project_path = tempfile.gettempdir() + "/ghidra_" + str(uuid.uuid4())
        os.makedirs(project_path, exist_ok=True)
        self.log.debug(f"Created temporary project path: {project_path}")
        output_file = ""

        try:
            # Run Ghidra's headless analyzer
            analyze_cmd = [
                analyzeHeadless_path,
                project_path,
                "TempProject",
                "-import",
                self.filepath,
                "-postScript",
                self.java_script_path,
                self.sha256,
                "-deleteProject",
            ]

            result = self.run_command(analyze_cmd, env=env)
            if result is None:
                return None

            # Read the output JSON file
            output_file = os.path.join(
                self.decompiled_folder, self.sha256 + "-decompiled.json"
            )
            if os.path.exists(output_file):
                with open(output_file, "r") as f:
                    functions = json.load(f)
                return functions
            else:
                self.log.error(
                    f"Output file {output_file} not found. Ghidra analysis may have failed."
                )
                return None
        finally:
            # Clean up
            if os.path.exists(project_path):
                shutil.rmtree(project_path)
                self.log.debug(f"Deleted temporary project path: {project_path}")

    def extract(self):
        self.log.debug(inspect.currentframe().f_code.co_name)
        try:
            functions = self.analyze_binary()

            if functions:
                self.log.info(f"Extracted functions from {self.filepath}:")
                for func in functions:
                    id = sha256(func["address"].encode()).hexdigest()
                    self.decompiled = Decompiled(
                        _id=id,
                        decompiled_function_name=func["name"],
                        decompiled_function_address=func["address"],
                        decompiled_function=func["decompiled"],
                    )
                    self.export_to_elastic([self.decompiled])
            else:
                self.log.error("No decompiled functions extracted.")
            return True
        except Exception as e:
            self.log.error(f"Error extracting decompiled information: {e}")
            return None

    def tag(self):
        return Tag.DECOMPILED.value