Nurit Haspel - RankMe

42 papers Journal 15Unranked 25

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Allosteric Activation of RhoA Complexed with p115-RhoGEF Deciphered by Conformational Dynamics. J. Chem. Inf. Model. Nurit Haspel, Hyunbum Jang, Ruth Nussinov
2024	—	`conf`	Elucidating Cancer Subtypes by Using Epigenome and Genome Cross-Talk. IWBBIO (1) Muneeba Jilani, Nurit Haspel
2023	—	`conf`	Investigating the Role of Gene Body Methylation and CpG Methylation in Cancer Subtyping. ICBRA Muneeba Jilani, Nurit Haspel
2021	—	`conf`	Assessing the Effects of Amino Acid Insertion and Deletion Mutations. BIBM Muneeba Jilani, Alistair Turcan, Nurit Haspel, Filip Jagodzinski
2020	J	`jnl`	Patch-DCA: improved protein interface prediction by utilizing structural information and clustering DCA scores. Bioinform. Amir Vajdi, Kourosh Zarringhalam, Nurit Haspel
2019	—	`conf`	Integrating Co-Evolutionary Information in Monte Carlo Based Method for Proteins Trajectory Simulation. BCB Amir Vajdi, Arpita Joshi, Nurit Haspel
2017	—	`conf`	Detecting chromosomal structural variation using jaccard distance and parallel architecture. BIBM Hamidreza Mohebbi, Amir Vajdi, Nurit Haspel, Dan A. Simovici
2017	J	`jnl`	Detecting intermediate protein conformations using algebraic topology. BMC Bioinform. Nurit Haspel, Dong Luo, Eduardo Gonzalez
2017	J	`jnl`	Introduction to selected papers from the 8th International Conference on Bioinformatics and Computational Biology (BICOB 2016). J. Bioinform. Comput. Biol. Nurit Haspel, Thomas R. Ioerger, Hisham Al-Mubaid
2017	J	`jnl`	Machine Learning Approaches for Predicting Protein Complex Similarity. J. Comput. Biol. Roshanak Farhoodi, Bahar Akbal-Delibas, Nurit Haspel
2017	—	`conf`	Predicting the Effect of Point Mutations on Protein Structural Stability. BCB Roshanak Farhoodi, Max Shelbourne, Rebecca Hsieh, Nurit Haspel, Brian Hutchinson, Filip Jagodzinski
2017	J	`jnl`	Preface: Selected Articles from 2015 Computational Structural Bioinformatics Workshop. J. Comput. Biol. Jing He, Nurit Haspel, Brian Chen
2017	—	`ed.`	Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2017, Boston, MA, USA, August 20-23, 2017 BCB Nurit Haspel, Lenore J. Cowen, Amarda Shehu, Tamer Kahveci, Giuseppe Pozzi
2017	—	`conf`	Ranking Protein-Protein Binding Using Evolutionary Information and Machine Learning. BCB Roshanak Farhoodi, Bahar Akbal-Delibas, Nurit Haspel
2017	—	`conf`	The 2017 Computational Structural Bioinformatics Workshop: CSBW 2017. BCB Nurit Haspel, Amarda Shehu, Kevin Molloy
2016	J	`jnl`	Accurate refinement of docked protein complexes using evolutionary information and deep learning. J. Bioinform. Comput. Biol. Bahar Akbal-Delibas, Roshanak Farhoodi, Marc Pomplun, Nurit Haspel
2016	—	`conf`	Assessing how multiple mutations affect protein stability using rigid cluster size distributions. ICCABS Erik Andersson, Rebecca Hsieh, Howard Szeto, Roshanak Farhoodi, Nurit Haspel, Filip Jagodzinski
2016	—	`conf`	Detecting intermediate protein conformations using algebraic topology. ICCABS Nurit Haspel, Dong Luo, Eduardo Gonzalez
2016	J	`jnl`	Introduction to the selected papers from the 7th International Conference on Bioinformatics and Computational Biology (BICoB 2015). J. Bioinform. Comput. Biol. Fahad Saeed, Nurit Haspel, Hisham Al-Mubaid
2015	—	`conf`	A new DP algorithm for comparing gene expression data using geometric similarity. BIBM Amir Vajdi, Nurit Haspel, Hadi Banaee
2015	—	`conf`	A new DP algorithm for comparing gene expression data using geometric similarity. BIBM Amir Vajdi, Nurit Haspel, Hadi Banaee
2015	J	`jnl`	Accurate Prediction of Docked Protein Structure Similarity. J. Comput. Biol. Bahar Akbal-Delibas, Marc Pomplun, Nurit Haspel
2015	—	`conf`	Accurate prediction of docked protein structure similarity using neural networks and restricted Boltzmann machines. BIBM Roshanak Farhoodi, Bahar Akbal-Delibas, Nurit Haspel
2015	J	`jnl`	The 7th Computational Structural Bioinformatics Workshop. J. Comput. Biol. Jing He, Amarda Shehu, Nurit Haspel, Brian Chen
2014	—	`conf`	AccuRMSD: a machine learning approach to predicting structure similarity of docked protein complexes. BCB Bahar Akbal-Delibas, Marc Pomplun, Nurit Haspel
2014	—	`conf`	TIDE: Inter-chromosomal translocation and insertion detection using embeddings. IEEE BigData Rosanne Vetro, Roshanak Farhoodi, Rohith Kotla, Nurit Haspel, David Weisman, Jennifer Rosen, Dan A. Simovici
2013	—	`conf`	An Evolutionary Conservation & Rigidity Analysis Machine Learning Approach for Detecting Critical Protein Residues. BCB Filip Jagodzinski, Bahar Akbal-Delibas, Nurit Haspel
2013	—	`conf`	Multi-Resolution Rigidity-Based Sampling of Protein Conformational Paths. BCB Dong Luo, Nurit Haspel
2012	J	`jnl`	An Evolutionary conservation-Based Method for Refining and Reranking protein Complex Structures. J. Bioinform. Comput. Biol. Bahar Akbal-Delibas, Irina Hashmi, Amarda Shehu, Nurit Haspel
2012	—	`conf`	An evolutionary-guided iterative refinement approach for protein multimers. BIBM Workshops Bahar Akbal-Delibas, Nurit Haspel
2012	—	`conf`	Characterizing Intermediate Conformations in Protein Conformational Space. CIBB Rosanne Vetro, Nurit Haspel, Dan A. Simovici
2012	—	`conf`	Combining conservation and rigidity methods to detect critical residues in proteins. BIBM Workshops Bahar Akbal-Delibas, Filip Jagodzinski, Nurit Haspel
2012	J	`jnl`	Guiding protein docking with Geometric and Evolutionary Information. J. Bioinform. Comput. Biol. Irina Hashmi, Bahar Akbal-Delibas, Nurit Haspel, Amarda Shehu
2012	—	`conf`	Refining multimeric protein complexes using conservation, electrostatics and probabilistic selection. BIBM Workshops Bahar Akbal-Delibas, Nurit Haspel
2012	—	`conf`	Towards a hybrid method for detecting critical protein residues. BIBM Workshops Bahar Akbal-Delibas, Filip Jagodzinski, Nurit Haspel
2011	—	`conf`	Protein docking with information on evolutionary conserved interfaces. BIBM Workshops Irina Hashmi, Bahar Akbal-Delibas, Nurit Haspel, Amarda Shehu
2011	—	`conf`	Refinement of docked protein complex structures using evolutionary traces. BIBM Workshops Bahar Akbal-Delibas, Irina Hashmi, Amarda Shehu, Nurit Haspel
2011	J	`jnl`	The 5th International Conference on Bio-Inspired Models of Network, Information and Computing Systems (Bionetics 2010) Special Track on Bioinformatics. J. Bioinform. Comput. Biol. Nurit Haspel, Amarda Shehu
2010	—	`conf`	Tracing Conformational Changes in Proteins Represented at a Coarse Level. BIONETICS Nurit Haspel
2009	J	`jnl`	Protein Segments with Conformationally Restricted Amino Acids Can Control Supramolecular Organization at the Nanoscale. J. Chem. Inf. Model. David Zanuy, Gema Ballano, Ana I. Jiménez, Jordi Casanovas, Nurit Haspel, Carlos Cativiela, David Curcó, Ruth Nussinov, Carlos Alemán
2006	J	`jnl`	A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly. Bioinform. Gilad Wainreb, Nurit Haspel, Haim J. Wolfson, Ruth Nussinov
2006	—	`—`	Computational modeling and prediction of self assembling [beta]-sheet rich protein structures Nurit Haspel