Nuno Bandeira

25 papers A 3B 6Journal 14Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Pep2Prob Benchmark: Predicting Fragment Ion Probability for MS
CoRR
Hao Xu, Zhichao Wang, Shengqi Sang, Pisit Wajanasara, Nuno Bandeira
2025 J jnl
Strategic priorities for transformative progress in advancing biology with proteomics and artificial intelligence.
CoRR
Yingying Sun, Jun A, Zhiwei Liu, Rui Sun, Liujia Qian, Samuel H. Payne, Wout Bittremieux, Markus Ralser, Chen Li, Yi Chen, Zhen Dong, Yasset Pérez-Riverol, Asif Khan, Chris Sander, Ruedi Aebersold, Juan Antonio Vizcaíno, Jonathan R. Krieger, Jianhua Yao, Han Wen, Linfeng Zhang, Yunping Zhu, Yue Xuan, Benjamin Boyang Sun, Liang Qiao, Henning Hermjakob, Haixu Tang, Huanhuan Gao, Yamin Deng, Qing Zhong, Cheng Chang, Nuno Bandeira, Ming Li, Weinan E, Siqi Sun, Yuedong Yang, Gilbert S. Omenn, Yue Zhang, Ping Xu, Yan Fu, Xiaowen Liu, Christopher M. Overall, Yu Wang, Eric W. Deutsch, Luonan Chen, Jürgen Cox, Vadim Demichev, Fuchu He, Jiaxing Huang, Huilin Jin, Chao Liu, Nan Li, Zhongzhi Luan, Jiangning Song, Kaicheng Yu, Wanggen Wan, Tai Wang, Kang Zhang, Le Zhang, Peter A. Bell, Matthias Mann, Bing Zhang, Tiannan Guo
2023 J jnl
The ProteomeXchange consortium at 10 years: 2023 update.
Nucleic Acids Res.
Eric W. Deutsch, Nuno Bandeira, Yasset Pérez-Riverol, Vagisha Sharma, Jeremy Carver, Luis Mendoza, Deepti Jaiswal Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno
2022 A conf
P-Massive: A Real-Time Search Engine for a Multi-Terabyte Mass Spectrometry Database.
SC
Narangerelt Batsoyol, Benjamin S. Pullman, Mingxun Wang, Nuno Bandeira, Steven Swanson
2021 J jnl
Index-based, High-dimensional, Cosine Threshold Querying with Optimality Guarantees.
Theory Comput. Syst.
Yuliang Li, Jianguo Wang, Benjamin S. Pullman, Nuno Bandeira, Yannis Papakonstantinou
2020 J jnl
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.
Nucleic Acids Res.
Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos, Andrew F. Jarnuczak, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno
2019 J jnl
Computational Proteomics (Dagstuhl Seminar 19351).
Dagstuhl Reports
Nuno Bandeira, Lennart Martens
2019 A conf
Index-Based, High-Dimensional, Cosine Threshold Querying with Optimality Guarantees.
ICDT
Yuliang Li, Jianguo Wang, Benjamin S. Pullman, Nuno Bandeira, Yannis Papakonstantinou
2018 J jnl
Index-based, High-dimensional, Cosine Threshold Querying with Optimality Guarantees.
CoRR
Yuliang Li, Jianguo Wang, Benjamin S. Pullman, Nuno Bandeira, Yannis Papakonstantinou
2017 — conf
Revealing deep proteome diversity with community-scale proteomics big data.
CSBio
Nuno Bandeira
2017 J jnl
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition.
Nucleic Acids Res.
Eric W. Deutsch, Attila Csordas, Zhi Sun, Andrew F. Jarnuczak, Yasset Pérez-Riverol, Tobias Ternent, David S. Campbell, Manuel Bernal Llinares, Shujiro Okuda, Shin Kawano, Robert L. Moritz, Jeremy Carver, Mingxun Wang, Yasushi Ishihama, Nuno Bandeira, Henning Hermjakob, Juan Antonio Vizcaíno
2016 — conf
On the Privacy Risks of Sharing Clinical Proteomics Data.
CRI
Sujun Li, Nuno Bandeira, Xiaofeng Wang, Haixu Tang
2015 J jnl
The Generating Function Approach for Peptide Identification in Spectral Networks.
J. Comput. Biol.
Adrian Guthals, Christina Boucher, Nuno Bandeira
2014 B conf
The Generating Function Approach for Peptide Identification in Spectral Networks.
RECOMB
Adrian Guthals, Christina Boucher, Nuno Bandeira
2013 B conf
Spectral Library Generating Function for Assessing Spectrum-Spectrum Match Significance.
RECOMB
Mingxun Wang, Nuno Bandeira
2012 J jnl
Accurate Mass Spectrometry Based Protein Quantification via Shared Peptides.
J. Comput. Biol.
Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna
2012 J jnl
False discovery rates in spectral identification.
BMC Bioinform.
Kyowon Jeong, Sangtae Kim, Nuno Bandeira
2011 J jnl
NeuroPedia: neuropeptide database and spectral library.
Bioinform.
Yoona Kim, Steven Bark, Vivian Hook, Nuno Bandeira
2010 B conf
Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra.
RECOMB
Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner
2009 B conf
Shared Peptides in Mass Spectrometry Based Protein Quantification.
RECOMB
Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna
2008 B conf
De Novo Sequencing of Nonribosomal Peptides.
RECOMB
Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter C. Dorrestein, Pavel A. Pevzner
2008 A conf
Multi-spectra peptide sequencing and its applications to multistage mass spectrometry.
ISMB
Nuno Bandeira, Jesper V. Olsen, Matthias Mann, Pavel A. Pevzner
2007 J jnl
Protein identification by spectral networks analysis.
Proc. Natl. Acad. Sci. USA
Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner
2006 B conf
A New Approach to Protein Identification.
RECOMB
Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner
1983 J jnl
A Two's Complement Array Multiplier Using True Values of the Operands.
IEEE Trans. Computers
Nuno Bandeira, Ken Vaccaro, James A. Howard