Noël Malod-Dognin

30 papers B 1C 2Misc 1Journal 23Unranked 2

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Clustering individuals using INMTD: a novel versatile multi-view embedding framework integrating omics and imaging data. Bioinform. Zuqi Li, Sam F. L. Windels, Noël Malod-Dognin, Seth M. Weinberg, Mary L. Marazita, Susan Walsh, Mark D. Shriver, David W. Fardo, Peter Claes, Natasa Przulj, Kristel Van Steen
2024	J	`jnl`	Graphlet-based hyperbolic embeddings capture evolutionary dynamics in genetic networks. Bioinform. Sam F. L. Windels, Daniel Tello Velasco, Mikhail Rotkevich, Noël Malod-Dognin, Natasa Przulj
2024	J	`jnl`	Graphlets correct for the topological information missed by random walks. CoRR Sam F. L. Windels, Noël Malod-Dognin, Natasa Przulj
2024	J	`jnl`	Simplicity within biological complexity. CoRR Natasa Przulj, Noël Malod-Dognin
2024	J	`jnl`	Simplifying complex machine learning by linearly separable network embedding spaces. CoRR Alexandros Xenos, Noël Malod-Dognin, Natasa Przulj
2023	J	`jnl`	A functional analysis of omic network embedding spaces reveals key altered functions in cancer. Bioinform. Sergio Doria-Belenguer, Alexandros Xenos, Gaia Ceddia, Noël Malod-Dognin, Natasa Przulj
2022	J	`jnl`	Identifying cellular cancer mechanisms through pathway-driven data integration. Bioinform. Sam F. L. Windels, Noël Malod-Dognin, Natasa Przulj
2021	J	`jnl`	Classification in biological networks with hypergraphlet kernels. Bioinform. Jose Lugo-Martinez, Daniel Zeiberg, Thomas Gaudelet, Noël Malod-Dognin, Natasa Przulj, Predrag Radivojac
2021	J	`jnl`	Linear functional organization of the omic embedding space. Bioinform. Alexandros Xenos, Noël Malod-Dognin, S. Milinkovic, Natasa Przulj
2020	J	`jnl`	Chromatin network markers of leukemia. Bioinform. Noël Malod-Dognin, Vera Pancaldi, Alfonso Valencia, Natasa Przulj
2020	J	`jnl`	Probabilistic graphlets capture biological function in probabilistic molecular networks. Bioinform. Sergio Doria-Belenguer, Markus K. Youssef, René Böttcher, Noël Malod-Dognin, Natasa Przulj
2019	J	`jnl`	Functional geometry of protein interactomes. Bioinform. Noël Malod-Dognin, Natasa Przulj
2019	J	`jnl`	Graphlet Laplacians for topology-function and topology-disease relationships. Bioinform. Sam F. L. Windels, Noël Malod-Dognin, Natasa Przulj
2018	J	`jnl`	Higher-order molecular organization as a source of biological function. Bioinform. Thomas Gaudelet, Noël Malod-Dognin, Natasa Przulj
2017	J	`jnl`	Omics Data Complementarity Underlines Functional Cross-Communication in Yeast. J. Integr. Bioinform. Noël Malod-Dognin, Natasa Przulj
2017	J	`jnl`	Rebuttal to the Letter to the Editor in response to the paper: proper evaluation of alignment-free network comparison methods. Bioinform. Ömer Nebil Yaveroglu, Noël Malod-Dognin, Tijana Milenkovic, Natasa Przulj
2016	J	`jnl`	Fuse: multiple network alignment via data fusion. Bioinform. Vladimir Gligorijevic, Noël Malod-Dognin, Natasa Przulj
2016	Misc	`conf`	Patient-Specific Data Fusion for Cancer Stratification and Personalised Treatment. PSB Vladimir Gligorijevic, Noël Malod-Dognin, Natasa Przulj
2016	J	`jnl`	Predictive Functional Connectivity of Real-World Systems. CoRR Anida Sarajlic, Noël Malod-Dognin, Ömer Nebil Yaveroglu, Natasa Przulj
2015	J	`jnl`	L-GRAAL: Lagrangian graphlet-based network aligner. Bioinform. Noël Malod-Dognin, Natasa Przulj
2015	J	`jnl`	Topology-function conservation in protein-protein interaction networks. Bioinform. Darren Davis, Ömer Nebil Yaveroglu, Noël Malod-Dognin, Aleksandar Stojmirovic, Natasa Przulj
2014	J	`jnl`	GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity. Bioinform. Noël Malod-Dognin, Natasa Przulj
2012	J	`jnl`	CSA: comprehensive comparison of pairwise protein structure alignments. Nucleic Acids Res. Inken Wohlers, Noël Malod-Dognin, Rumen Andonov, Gunnar W. Klau
2011	J	`jnl`	Maximum Contact Map Overlap Revisited. J. Comput. Biol. Rumen Andonov, Noël Malod-Dognin, Nicola Yanev
2011	—	`conf`	Shape Matching by Localized Calculations of Quasi-Isometric Subsets, with Applications to the Comparison of Protein Binding Patches. PRIB Frédéric Cazals, Noël Malod-Dognin
2011	C	`conf`	Using Dominances for Solving the Protein Family Identification Problem. WABI Noël Malod-Dognin, Mathilde Le Boudic-Jamin, Pritish Kamath, Rumen Andonov
2010	B	`conf`	Maximum Cliques in Protein Structure Comparison. SEA Noël Malod-Dognin, Rumen Andonov, Nicola Yanev
2010	—	`—`	Protein Structure Comparison: From Contact Map Overlap Maximisation to Distance-based Alignment Search Tool. (La comparaison structurale des protéines : de la maximisation du recouvrement de cartes de contacts à l'alignement basé sur les distances). Noël Malod-Dognin
2010	—	`conf`	SHREC'10 Track: Protein Model Classification. 3DOR@Eurographics Lazaros Mavridis, Vishwesh Venkatraman, David W. Ritchie, Naoto Morikawa, Rumen Andonov, Alexandre Cornu, Noël Malod-Dognin, Jacques Nicolas, Maja Temerinac-Ott, Marco Reisert, Hans Burkhardt, Apostolos Axenopoulos, Petros Daras
2008	C	`conf`	An Efficient Lagrangian Relaxation for the Contact Map Overlap Problem. WABI Rumen Andonov, Nicola Yanev, Noël Malod-Dognin