Noriko Hiroi

19 papers A 1B 8Journal 4Unranked 6
YearRankTypeTitle / Venue / Authors
2013 — conf
In vivo oriented modeling with consideration of intracellular crowding.
EMBC
Noriko Hiroi, Keisuke Iba, Akito Tabira, Takahiro Okuhara, Takeshi Kubojima, Takumi Hiraiwa, Tetsuya J. Kobayashi, Kotaro Oka, Akira Funahashi
2013 J jnl
LibSBMLSim: a reference implementation of fully functional SBML simulator.
Bioinform.
Hiromu Takizawa, Kazushige Nakamura, Akito Tabira, Yoichi Chikahara, Tatsuhiro Matsui, Noriko Hiroi, Akira Funahashi
2013 J jnl
The systems biology simulation core algorithm.
BMC Syst. Biol.
Roland Keller, Alexander Dörr, Akito Tabira, Akira Funahashi, Michael J. Ziller, Richard R. Adams, Nicolas Rodriguez, Nicolas Le Novère, Noriko Hiroi, Hannes Planatscher, Andreas Zell, Andreas Dräger
2012 J jnl
From Microscopy Data to in silico Environments for in vivo Oriented Simulations.
EURASIP J. Bioinform. Syst. Biol.
Noriko Hiroi, Michael Klann, Keisuke Iba, Pablo de Heras Ciechomski, Shuji Yamashita, Akito Tabira, Takahiro Okuhara, Takeshi Kubojima, Yasunori Okada, Kotaro Oka, Robin Mange, Michael Unger, Akira Funahashi, Heinz Koeppl
2010 — conf
A datapath classification method for FPGA-based scientific application accelerator systems.
FPT
Yui Ogawa, Tomonori Ooya, Yasunori Osana, Masato Yoshimi, Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Hideharu Amano, Yuichiro Shibata, Kiyoshi Oguri
2010 J jnl
Automatic Pipeline Construction Focused on Similarity of Rate Law Functions for an FPGA-based Biochemical Simulator.
IPSJ Trans. Syst. LSI Des. Methodol.
Hideki Yamada, Yui Ogawa, Tomonori Ooya, Tomoya Ishimori, Yasunori Osana, Masato Yoshimi, Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Hideharu Amano, Yuichiro Shibata, Kiyoshi Oguri
2009 — conf
A Modular Approach to Heterogeneous Biochemical Model Simulation on an FPGA.
ReConFig
Hideki Yamada, Yasunori Osana, Tomoya Ishimori, Tomonori Ooya, Masato Yoshimi, Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Hideharu Amano, Yuichiro Shibata, Kiyoshi Oguri
2009 B conf
Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator.
FPL
Tomonori Ooya, Hideki Yamada, Tomoya Ishimori, Yuichiro Shibata, Yasunori Osana, Kiyoshi Oguri, Masato Yoshimi, Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Hideharu Amano
2009 — conf
Pipeline Scheduling with Input Port Constraints for an FPGA-Based Biochemical Simulator.
ARC
Tomoya Ishimori, Hideki Yamada, Yuichiro Shibata, Yasunori Osana, Masato Yoshimi, Yuri Nishikawa, Hideharu Amano, Akira Funahashi, Noriko Hiroi, Kiyoshi Oguri
2008 B conf
Practical implementation of a network-based stochastic biochemical simulation system on an FPGA.
FPL
Masato Yoshimi, Yuri Nishikawa, Yasunori Osana, Akira Funahashi, Yuichiro Shibata, Hideki Yamada, Noriko Hiroi, Hiroaki Kitano, Hideharu Amano
2007 B conf
A Combining technique of rate law functions for a cost-effective reconfigurable biological simulator.
FPL
Hideki Yamada, Naoki Iwanaga, Yuichiro Shibata, Yasunori Osana, Masato Yoshimi, Yow Iwaoka, Yuri Nishikawa, Toshinori Kojima, Hideharu Amano, Akira Funahashi, Noriko Hiroi, Hiroaki Kitano, Kiyoshi Oguri
2007 — conf
A Framework for Implementing a Network-Based Stochastic Biochemical Simulator on an FPGA.
FPT
Masato Yoshimi, Yuri Nishikawa, Toshinori Kojima, Yasunori Osana, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Hideki Yamada, Hiroaki Kitano, Hideharu Amano
2007 B conf
FPGA Implementation of a Data-Driven Stochastic Biochemical Simulator with the Next Reaction Method.
FPL
Masato Yoshimi, Yow Iwaoka, Yuri Nishikawa, Toshinori Kojima, Yasunori Osana, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hideki Yamada, Hiroaki Kitano, Hideharu Amano
2006 B conf
An FPGA Implementation of High Throughput Stochastic Simulator for Large-Scale Biochemical Systems.
FPL
Masato Yoshimi, Yasunori Osana, Yow Iwaoka, Yuri Nishikawa, Toshinori Kojima, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano
2006 B conf
Performance Evaluation of an Fpga-Based Biochemical Simulator ReCSip.
FPL
Yasunori Osana, Masato Yoshimi, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano
2005 B conf
A Framework for ODE-Based Multimodel Biochemical Simulations on an FPGA.
FPL
Yasunori Osana, Yow Iwaoka, Tomonori Fukushima, Masato Yoshimi, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano
2005 A conf
An FPGA-Based, Multi-model Simulation Method for Biochemical Systems.
IPDPS
Yasunori Osana, Tomonori Fukushima, Masato Yoshimi, Yow Iwaoka, Yuichiro Shibata, Hiroaki Kitano, Akira Funahashi, Noriko Hiroi, Hideharu Amano
2005 B conf
Efficient Scheduling of Rate Law Functions for ODE-Based Multimodel Biochemical Simulation on an FPGA.
FPL
Naoki Iwanaga, Yuichiro Shibata, Masato Yoshimi, Yasunori Osana, Yow Iwaoka, Tomonori Fukushima, Hideharu Amano, Akira Funahashi, Noriko Hiroi, Hiroaki Kitano, Kiyoshi Oguri
2005 — conf
The Design of Scalable Stochastic Biochemical Simulator on FPGA.
FPT
Masato Yoshimi, Yasunori Osana, Yow Iwaoka, Akira Funahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano