Noah M. Daniels

34 papers A 1B 4Journal 15Unranked 14
YearRankTypeTitle / Venue / Authors
2026 J jnl
MEDFORD in a Box: Improvements and Future Directions for a Metadata Description Language.
CoRR
Polina Shpilker, Benjamin Stubbs, Michael Sayers, Yumin Lee, Lenore Cowen, Donna K. Slonim, Shaun Wallace, Alva L. Couch, Noah M. Daniels
2026 J jnl
MuSAlS: A Fast Multiple Sequence Alignment Approach Using Hierarchical Clustering.
CoRR
Emily Light, Morgan E. Prior, Noah M. Daniels, Najib Ishaq
2025 B conf
Let them have CAKES: A Cutting-Edge Algorithm for Scalable, Efficient, and Exact Search on Big Data.
IEEE Big Data
Morgan E. Prior, Thomas J. Howard III, Oliver McLaughlin, Terry Ferguson, Najib Ishaq, Noah M. Daniels
2024 B conf
AnVILMEDFORD: Documenting Cloud-Based Analysis Projects Using the MEDFORD Metadata Language.
IEEE Big Data
Benjamin Stubbs, Polina Shpilker, Michael Sayers, Shaun Wallace, Noah M. Daniels, Alva L. Couch
2024 — conf
Cross-Referencing Metadata Through an Extension of the MEDFORD Language.
MTSR
Polina Shpilker, Benjamin Stubbs, Michael Sayers, Lenore Cowen, Shaun Wallace, Alva L. Couch, Noah M. Daniels
2024 B conf
Generalized compression and compressive search of large datasets.
IEEE Big Data
Morgan E. Prior, Thomas J. Howard III, Emily Light, Najib Ishaq, Noah M. Daniels
2024 J jnl
Generalized compression and compressive search of large datasets.
CoRR
Morgan E. Prior, Thomas J. Howard III, Emily Light, Najib Ishaq, Noah M. Daniels
2023 J jnl
CLAM-Accelerated K-Nearest Neighbors Entropy-Scaling Search of Large High-Dimensional Datasets via an Actualization of the Manifold Hypothesis.
CoRR
Morgan E. Prior, Thomas J. Howard III, Oliver McLaughlin, Najib Ishaq, Noah M. Daniels
2023 — conf
Context-Sensitive Editing for the MEDFORD Metadata Language.
MTSR
Liam Strand, Andrew Powers, Polina Shpilker, Lenore Cowen, Alva L. Couch, Noah M. Daniels
2022 — conf
Determining population structure from k-mer frequencies.
BCB
Yana Hrytsenko, Noah M. Daniels, Rachel S. Schwartz
2022 J jnl
MEDFORD: A human and machine readable metadata markup language.
CoRR
Polina Shpilker, John Freeman, Hailey McKelvie, Jill Ashey, Jay-Miguel Fonticella, Hollie Putnam, Jane Greenberg, Lenore J. Cowen, Alva L. Couch, Noah M. Daniels
2022 J jnl
MEDFORD: A human- and machine-readable metadata markup language.
Database J. Biol. Databases Curation
Polina Shpilker, John Freeman, Hailey McKelvie, Jill Ashey, Jay-Miguel Fonticella, Hollie Putnam, Jane Greenberg, Lenore Cowen, Alva L. Couch, Noah M. Daniels
2021 — conf
Clustered Hierarchical Anomaly and Outlier Detection Algorithms.
IEEE BigData
Najib Ishaq, Thomas J. Howard III, Noah M. Daniels
2021 J jnl
Clustered Hierarchical Anomaly and Outlier Detection Algorithms.
CoRR
Najib Ishaq, Thomas J. Howard III, Noah M. Daniels
2021 — conf
MEtaData Format for Open Reef Data (MEDFORD).
MTSR
Polina Shpilker, John Freeman, Hailey McKelvie, Jill Ashey, Jay-Miguel Fonticella, Hollie Putnam, Jane Greenberg, Lenore Cowen, Alva L. Couch, Noah M. Daniels
2019 — conf
Clustered Hierarchical Entropy-Scaling Search of Astronomical and Biological Data.
IEEE BigData
Najib Ishaq, George Student, Noah M. Daniels
2019 — conf
Clustered Hierarchical Entropy-Scaling Search of Astronomical and Biological Data.
IEEE BigData
Najib Ishaq, George Student, Noah M. Daniels
2019 J jnl
Clustered Hierarchical Entropy-Scaling Search of Astronomical and Biological Data.
CoRR
Najib Ishaq, George Student, Noah M. Daniels
2018 — conf
Efficient Distance Calculations Between Genomes Using Mathematical Approximation.
BCB
Yana Hrytsenko, Noah M. Daniels, Rachel S. Schwartz
2017 — conf
Analysis of 16S Genomic Data using Graphical Databases.
BCB
Olivia M. Ahern, Rebecca J. Stevick, Li Yuan, Noah M. Daniels
2017 — conf
Assortative Mixture of English Parts of Speech.
COMPLEX NETWORKS
Timothy Leonard, Lutz Hamel, Noah M. Daniels, Natallia V. Katenka
2016 B conf
An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values.
DCC
Claudio Alberti, Noah M. Daniels, Mikel Hernaez, Jan Voges, Rachel L. Goldfeder, Ana A. Hernandez-Lopez, Marco Mattavelli, Bonnie Berger
2016 J jnl
Computational biology in the 21st century: scaling with compressive algorithms.
Commun. ACM
Bonnie Berger, Noah M. Daniels
2015 J jnl
Entropy-scaling search of massive biological data.
CoRR
Yun William Yu, Noah M. Daniels, David Christian Danko, Bonnie Berger
2015 J jnl
MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search.
IEEE ACM Trans. Comput. Biol. Bioinform.
Noah M. Daniels, Andrew Gallant, Norman Ramsey, Lenore J. Cowen
2013 J jnl
Compressive genomics for protein databases.
Bioinform.
Noah M. Daniels, Andrew Gallant, Jian Peng, Lenore J. Cowen, Michael Baym, Bonnie Berger
2013 — conf
MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search.
BCB
Noah M. Daniels, Andrew Gallant, Norman Ramsey, Lenore J. Cowen
2013 J jnl
Remote Homology Detection in Proteins Using Graphical Models
CoRR
Noah M. Daniels
2012 A conf
Experience report: Haskell in computational biology.
ICFP
Noah M. Daniels, Andrew Gallant, Norman Ramsey
2012 J jnl
Formatt: Correcting Protein Multiple Structural Alignments by Incorporating Sequence Alignment.
BMC Bioinform.
Noah M. Daniels, Shilpa Nadimpalli, Lenore J. Cowen
2012 J jnl
SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone.
Bioinform.
Noah M. Daniels, Raghavendra Hosur, Bonnie Berger, Lenore J. Cowen
2011 — conf
Formatt: correcting protein multiple structural alignments by sequence peeking.
BCB
Shilpa Nadimpalli, Noah M. Daniels, Lenore Cowen
2010 — conf
Touring Protein Space with Matt.
ISBRA
Noah M. Daniels, Anoop Kumar, Lenore Cowen, Matthew Menke
2001 — conf
The Maelstrom: Network Service Debugging via "Ineffective Procedures".
LISA
Alva L. Couch, Noah M. Daniels