Nitin S. Baliga

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2015 J jnl
Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions.
BMC Syst. Biol.
Samuel A. Danziger, David J. Reiss, Alexander V. Ratushny, Jennifer J. Smith, Christopher L. Plaisier, John D. Aitchison, Nitin S. Baliga
2014 J jnl
Architecture for interoperable software in biology.
Briefings Bioinform.
James Christopher Bare, Nitin S. Baliga
2014 J jnl
Evolution of context dependent regulation by expansion of feast/famine regulatory proteins.
BMC Syst. Biol.
Christopher L. Plaisier, Fang-Yin Lo, Justin Ashworth, Aaron N. Brooks, Karlyn D. Beer, Amardeep Kaur, Min Pan, David J. Reiss, Marc T. Facciotti, Nitin S. Baliga
2014 J jnl
Network portal: a database for storage, analysis and visualization of biological networks.
Nucleic Acids Res.
Serdar Turkarslan, Elisabeth J. Wurtmann, Wei-Ju Wu, Ning Jiang, J. Christopher Bare, Karen Foley, David J. Reiss, Pavel S. Novichkov, Nitin S. Baliga
2013 J jnl
Metallochaperones Regulate Intracellular Copper Levels.
PLoS Comput. Biol.
Wyming Lee Pang, Amardeep Kaur, Alexander V. Ratushny, Aleksandar Cvetkovic, Sunil Kumar, Min Pan, Adam P. Arkin, John D. Aitchison, Michael W. W. Adams, Nitin S. Baliga
2011 J jnl
miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling.
Nucleic Acids Res.
Christopher Plaisier, J. Christopher Bare, Nitin S. Baliga
2010 J jnl
GTC: A web server for integrating systems biology data with web tools and desktop applications.
Source Code Biol. Medicine
Dan Tenenbaum, J. Christopher Bare, Nitin S. Baliga
2010 J jnl
Integration and visualization of systems biology data in context of the genome.
BMC Bioinform.
J. Christopher Bare, Tie Koide, David J. Reiss, Dan Tenenbaum, Nitin S. Baliga
2010 J jnl
Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis.
BMC Syst. Biol.
Marc T. Facciotti, Wyming Lee Pang, Fang-Yin Lo, Kenia Whitehead, Tie Koide, Ken-ichi Masumura, Min Pan, Amardeep Kaur, David J. Larsen, David J. Reiss, Linh Hoang, Ewa Kalisiak, Trent Northen, Sunia A. Trauger, Gary Siuzdak, Nitin S. Baliga
2008 J jnl
Model-based deconvolution of genome-wide DNA binding.
Bioinform.
David J. Reiss, Marc T. Facciotti, Nitin S. Baliga
2007 J jnl
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications.
BMC Bioinform.
J. Christopher Bare, Paul T. Shannon, Amy K. Schmid, Nitin S. Baliga
2006 J jnl
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks.
BMC Bioinform.
David J. Reiss, Nitin S. Baliga, Richard Bonneau
2006 J jnl
The Gaggle: An open-source software system for integrating bioinformatics software and data sources.
BMC Bioinform.
Paul T. Shannon, David J. Reiss, Richard Bonneau, Nitin S. Baliga