Niranjan Nagarajan

28 papers A* 1B 3C 2Journal 18Unranked 3

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Comparative analysis of metagenomic classifiers for long-read sequencing datasets. BMC Bioinform. Josip Maric, Kresimir Krizanovic, Sylvain Riondet, Niranjan Nagarajan, Mile Sikic
2024	J	`jnl`	Floria: fast and accurate strain haplotyping in metagenomes. Bioinform. Jim Shaw, Jean-Sébastien Gounot, Hanrong Chen, Niranjan Nagarajan, Yun William Yu
2024	J	`jnl`	MetageNN: a memory-efficient neural network taxonomic classifier robust to sequencing errors and missing genomes. BMC Bioinform. Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan
2023	J	`jnl`	CREAMMIST: an integrative probabilistic database for cancer drug response prediction. Nucleic Acids Res. Hatairat Yingtaweesittikul, Jiaxi Wu, Aanchal Mongia, Rafael Peres, Karrie Ko, Niranjan Nagarajan, Chayaporn Suphavilai
2021	J	`jnl`	BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data. PLoS Comput. Biol. Chenhao Li, Tamar Vered Av-Shalom, Jun Wei Gerald Tan, Junmei Samantha Kwah, Kern Rei Chng, Niranjan Nagarajan
2021	J	`jnl`	TUGDA: task uncertainty guided domain adaptation for robust generalization of cancer drug response prediction from in vitro to in vivo settings. Bioinform. Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan
2021	A*	`conf`	Task Uncertainty Loss Reduce Negative Transfer in Asymmetric Multi-task Feature Learning (Student Abstract). AAAI Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan
2020	J	`jnl`	Task Uncertainty Loss Reduce Negative Transfer in Asymmetric Multi-task Feature Learning. CoRR Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan
2018	J	`jnl`	Predicting Cancer Drug Response using a Recommender System. Bioinform. Chayaporn Suphavilai, Denis Bertrand, Niranjan Nagarajan
2016	J	`jnl`	@MInter: automated text-mining of microbial interactions. Bioinform. Kun Ming Kenneth Lim, Chenhao Li, Kern Rei Chng, Niranjan Nagarajan
2012	C	`conf`	FinIS: Improved in silico Finishing Using an Exact Quadratic Programming Formulation. WABI Song Gao, Denis Bertrand, Niranjan Nagarajan
2011	B	`conf`	Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences. RECOMB Song Gao, Niranjan Nagarajan, Wing-Kin Sung
2011	J	`jnl`	Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences. J. Comput. Biol. Song Gao, Wing-Kin Sung, Niranjan Nagarajan
2010	J	`jnl`	Alignment and clustering of phylogenetic markers - implications for microbial diversity studies. BMC Bioinform. James Robert White, Saket Navlakha, Niranjan Nagarajan, Mohammadreza Ghodsi, Carl Kingsford, Mihai Pop
2010	J	`jnl`	Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. J. Comput. Biol. Saket Navlakha, James Robert White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford
2009	B	`conf`	Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. RECOMB Saket Navlakha, James Robert White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford
2009	J	`jnl`	Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing. J. Comput. Biol. Niranjan Nagarajan, Mihai Pop
2009	J	`jnl`	Reliability and efficiency of algorithms for computing the significance of the Mann-Whitney test. Comput. Stat. Niranjan Nagarajan, Uri Keich
2009	J	`jnl`	Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. PLoS Comput. Biol. James Robert White, Niranjan Nagarajan, Mihai Pop
2008	J	`jnl`	FAST: Fourier transform based algorithms for significance testing of ungapped multiple alignments. Bioinform. Niranjan Nagarajan, Uri Keich
2008	J	`jnl`	Scaffolding and validation of bacterial genome assemblies using optical restriction maps. Bioinform. Niranjan Nagarajan, Timothy D. Read, Mihai Pop
2008	—	`conf`	Uncovering Genomic Reassortments among Influenza Strains by Enumerating Maximal Bicliques. BIBM Niranjan Nagarajan, Carl Kingsford
2007	—	`—`	Statistical Techniques for Biological Motif Discovery. Niranjan Nagarajan
2006	—	`conf`	Apples to apples: improving the performance of motif finders and their significance analysis in the Twilight Zone. ISMB (Supplement of Bioinformatics) Patrick Ng, Niranjan Nagarajan, Neil Jones, Uri Keich
2005	—	`conf`	Computing the P-value of the information content from an alignment of multiple sequences. ISMB (Supplement of Bioinformatics) Niranjan Nagarajan, Neil Jones, Uri Keich
2004	C	`conf`	A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial llr Statistic. WABI Uri Keich, Niranjan Nagarajan
2004	J	`jnl`	Automatic prediction of protein domains from sequence information using a hybrid learning system. Bioinform. Niranjan Nagarajan, Golan Yona
2003	B	`conf`	A multi-expert system for the automatic detection of protein domains from sequence information. RECOMB Niranjan Nagarajan, Golan Yona