Nikolay A. Kolchanov

92 papers A 3B 1Journal 72Unranked 16

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	BGRS: bioinformatics of genome regulation and data integration. J. Integr. Bioinform. Yuriy L. Orlov, Ming Chen, Nikolay A. Kolchanov, Ralf Hofestädt
2024	J	`jnl`	Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection. J. Integr. Bioinform. Evgeniya A. Antropova, Tamara M. Khlebodarova, Pavel S. Demenkov, Anastasiia R. Volianskaia, Artur S. Venzel, Nikita V. Ivanisenko, Alexandr D. Gavrilenko, Timofey V. Ivanisenko, Anna V. Adamovskaya, Polina M. Revva, Nikolay A. Kolchanov, Inna N. Lavrik, Vladimir A. Ivanisenko
2018	J	`jnl`	Argo_CUDA: Exhaustive GPU based approach for motif discovery in large DNA datasets. J. Bioinform. Comput. Biol. Oleg V. Vishnevsky, Andrey V. Bocharnikov, Nikolay A. Kolchanov
2018	J	`jnl`	Introduction to the 9th Young Scientists School on Systems Biology and Bioinformatics (SBB'2017). J. Bioinform. Comput. Biol. Yuriy L. Orlov, Tatiana V. Tatarinova, Maksim V. Zakhartsev, Nikolay A. Kolchanov
2017	J	`jnl`	Editorial - Bioinformatics development at the BGRS\SB conference series: 10th anniversary. J. Bioinform. Comput. Biol. Yuriy L. Orlov, Nikolay A. Kolchanov, Ralf Hofestädt, Limsoon Wong
2017	J	`jnl`	Identification of residues of the archaeal RNA-binding Nip7 proteins specific to environmental conditions. J. Bioinform. Comput. Biol. Kirill E. Medvedev, Nikolay A. Kolchanov, Dmitry A. Afonnikov
2016	J	`jnl`	Large scale analysis of amino acid substitutions in bacterial proteomics. BMC Bioinform. Dmitry S. Ischenko, Dmitry G. Alexeev, Egor Shitikov, Alexandra Kanygina, Maja Malakhova, Elena S. Kostryukova, Andrey Larin, Sergey Kovalchuk, Olga Pobeguts, Ivan Butenko, Nikolay A. Kolchanov, Ilya A. Altukhov, Elena Ilina, Vadim Govorun
2015	J	`jnl`	ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology. BMC Syst. Biol. Vladimir A. Ivanisenko, Olga V. Saik, Nikita V. Ivanisenko, Evgeny S. Tiys, Timofey V. Ivanisenko, Pavel S. Demenkov, Nikolay A. Kolchanov
2015	J	`jnl`	Introductory note for BGRS\SB-2014 special issue. J. Bioinform. Comput. Biol. Yuriy L. Orlov, Ralf Hofestädt, Nikolay A. Kolchanov
2015	J	`jnl`	Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome). BMC Syst. Biol. Andrey S. Glotov, Evgeny S. Tiys, Elena S. Vashukova, Vladimir S. Pakin, Pavel S. Demenkov, Olga V. Saik, Timofey V. Ivanisenko, Olga N. Arzhanova, Elena V. Mozgovaya, Marina S. Zainulina, Nikolay A. Kolchanov, Vladislav S. Baranov, Vladimir A. Ivanisenko
2015	J	`jnl`	Permanent proteins in the urine of healthy humans during the Mars-500 experiment. J. Bioinform. Comput. Biol. Irina M. Larina, Lyudmila Kh. Pastushkova, Evgeny S. Tiys, Kirill S. Kireev, Alexey S. Kononikhin, Natalia L. Starodubtseva, Igor A. Popov, Marc-Antoine Custaud, Igor V. Dobrokhotov, Evgeny N. Nikolaev, Nikolay A. Kolchanov, Vladimir A. Ivanisenko
2013	B	`conf`	Enhanced Differential Evolution Entirely Parallel Method for Biomedical Applications. PaCT Konstantin Kozlov, Nikita Ivanisenko, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Maria Samsonova, Alexander M. Samsonov
2013	J	`jnl`	How Multiple Auxin Responsive Elements May Interact in plant promoters: a Reverse Problem solution. J. Bioinform. Comput. Biol. Victoria V. Mironova, Nadezda A. Omelyanchuk, Maria S. Savina, Petr M. Ponomarenko, Mikhail P. Ponomarenko, Vitali A. Likhoshvai, Nikolay A. Kolchanov
2013	J	`jnl`	Introductory Note for Bgrs-2012 Special Issue. J. Bioinform. Comput. Biol. Nikolay A. Kolchanov, Yuriy L. Orlov
2013	J	`jnl`	Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. J. Bioinform. Comput. Biol. Björn Sommer, Benjamin Kormeier, Pavel Demenkov, Patrizio Arrigo, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
2012	J	`jnl`	ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem. Silico Biol. Pavel Demenkov, Timofey V. Ivanisenko, Nikolay A. Kolchanov, Vladimir A. Ivanisenko
2012	J	`jnl`	SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes. Nucleic Acids Res. Irina V. Medvedeva, Pavel Demenkov, Nikolay A. Kolchanov, Vladimir A. Ivanisenko
2010	J	`jnl`	A plausible mechanism for auxin patterning along the developing root. BMC Syst. Biol. Victoria V. Mironova, Nadezda A. Omelyanchuk, Guy Yosiphon, Stanislav I. Fadeev, Nikolay A. Kolchanov, Eric Mjolsness, Vitali A. Likhoshvai
2010	J	`jnl`	Snps in the HIV-1 TATA Box and the Aids pandemic. J. Bioinform. Comput. Biol. Valentin V. Suslov, Petr M. Ponomarenko, Vadim M. Efimov, Ludmila K. Savinkova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov
2010	J	`jnl`	Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. J. Integr. Bioinform. Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
2008	J	`jnl`	Genetic algorithm and optimized weight matrix application for peroxisome proliferator response elements recognition: Prerequisites of accuracy growth for wide genome research. Intell. Data Anal. Victor G. Levitsky, Elena V. Ignatieva, Eugenia Aman, Tatyana I. Merkulova, Nikolay A. Kolchanov, T. Charles Hodgman
2008	J	`jnl`	TRRD: Technology for extraction, storage, and use of knowledge about the structural-functional organization of the transcriptional regulatory regions in the eukaryotic genes. Intell. Data Anal. Nikolay A. Kolchanov, Elena V. Ignatieva, Olga A. Podkolodnaya, Elena A. Ananko, Tamara M. Khlebodarova, Irina L. Stepanenko, Tatyana I. Merkulova, Vasily M. Merkulov, Nikolay L. Podkolodny, Aida G. Romashchenko
2007	J	`jnl`	A Cellular Automaton to Model the Development of Primary Shoot Meristems of Arabidopsis thaliana. J. Bioinform. Comput. Biol. Ilya R. Akberdin, Evgeniy A. Ozonov, Victoria V. Mironova, Nadezda A. Omelyanchuk, Vitali A. Likhoshvai, Dmytry N. Gorpinchenko, Nikolay A. Kolchanov
2007	J	`jnl`	AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site. BMC Bioinform. Alexey V. Kochetov, Andrey Palyanov, Igor I. Titov, Dmitry A. Grigorovich, Akinori Sarai, Nikolay A. Kolchanov
2007	—	`conf`	Analysis of Protein Functional Site Distribution on Gene Structure. BIOCOMP Irina Medvedeva, Pavel Demenkov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov
2007	J	`jnl`	Application of Bioinformatics Resources for Genosensor Design. J. Bioinform. Comput. Biol. Tamara M. Khlebodarova, Nina V. Tikunova, Alla V. Kachko, Irina L. Stepanenko, Nikolay L. Podkolodny, Nikolay A. Kolchanov
2007	J	`jnl`	Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes. Briefings Bioinform. Nikolay A. Kolchanov, Tatyana I. Merkulova, Elena V. Ignatieva, Elena A. Ananko, Dmitry Yu. Oshchepkov, Victor G. Levitsky, Gennady V. Vasiliev, Nataly V. Klimova, Vasily M. Merkulov, T. Charles Hodgman
2007	J	`jnl`	Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions. BMC Bioinform. Victor G. Levitsky, Elena V. Ignatieva, Elena A. Ananko, Igor I. Turnaev, Tatyana I. Merkulova, Nikolay A. Kolchanov, T. Charles Hodgman
2007	J	`jnl`	Fifth International Conference on Bioinformatics of Genome Regulation and Structure-BGRS'2006. Silico Biol. Sergei N. Rodin, Nikolay A. Kolchanov
2007	—	`conf`	From Published Expression and Phenotype Data to Structured Knowledge: The Arabidopsis Gene Net Supplementary Database and Its Applications. KONT/KPP Denis K. Ponomaryov, Nadezhda Omelianchuk, Victoria V. Mironova, Eugene Zalevsky, Nikolay L. Podkolodny, Eric Mjolsness, Nikolay A. Kolchanov
2007	J	`jnl`	Mathematical Model for Suppression of Subgenomic Hepatitis C Virus RNA Replication in Cell Culture. J. Bioinform. Comput. Biol. Elena L. Mishchenko, Kirill D. Bezmaternykh, Vitali A. Likhoshvai, Alexander V. Ratushny, Tamara M. Khlebodarova, Natalia Yu. Sournina, Vladimir A. Ivanisenko, Nikolay A. Kolchanov
2007	J	`jnl`	Model of the reception of Hedgehog morphogen concentration Gradient: Comparison with an Extended Range of Experimental Data. J. Bioinform. Comput. Biol. Konstantin V. Gunbin, Leonid V. Omelyanchuk, Vladislav V. Kogai, Stanislav I. Fadeev, Nikolay A. Kolchanov
2007	J	`jnl`	Recognition of interferon-inducible sites, promoters, and enhancers. BMC Bioinform. Elena A. Ananko, Yury V. Kondrakhin, Tatyana I. Merkulova, Nikolay A. Kolchanov
2007	J	`jnl`	Simulation of Coevolution in Community by Using the "Evolutionary Constructor" Program. Silico Biol. Sergey A. Lashin, Valentin V. Suslov, Nikolay A. Kolchanov, Yuri G. Matushkin
2007	J	`jnl`	The Evolution of the Hh-Signaling Pathway Genes: A Computer-Assisted Study. Silico Biol. Konstantin V. Gunbin, Dmitry A. Afonnikov, Nikolay A. Kolchanov
2005	J	`jnl`	ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters. Nucleic Acids Res. Oleg V. Vishnevsky, Nikolay A. Kolchanov
2005	J	`jnl`	GeneNet in 2005. Nucleic Acids Res. Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Olga A. Podkolodnaya, D. A. Rasskazov, Denis S. Miginsky, Vitali A. Likhoshvai, Alexander V. Ratushny, N. N. Podkolodnaya, Nikolay A. Kolchanov
2005	J	`jnl`	NPRD: Nucleosome Positioning Region Database. Nucleic Acids Res. Victor G. Levitsky, Aleksey V. Katokhin, Olga A. Podkolodnaya, Dagmara P. Furman, Nikolay A. Kolchanov
2005	J	`jnl`	PDBSite: a database of the 3D structure of protein functional sites. Nucleic Acids Res. Vladimir A. Ivanisenko, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov
2005	J	`jnl`	WebProAnalyst: an interactive tool for analysis of quantitative structure-activity relationships in protein families. Nucleic Acids Res. Vladimir A. Ivanisenko, Alexey M. Eroshkin, Nikolay A. Kolchanov
2004	J	`jnl`	CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences. Nucleic Acids Res. Dmitry A. Afonnikov, Nikolay A. Kolchanov
2004	J	`jnl`	PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins. Nucleic Acids Res. Vladimir A. Ivanisenko, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov
2003	J	`jnl`	The 3rd International Conference on Bioinformatics of Genome Regulation and Structure (BGRS 2002) - Preface. Silico Biol. Nikolay A. Kolchanov, Ralf Hofestädt
2002	J	`jnl`	ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro. Nucleic Acids Res. Vadim P. Valuev, Dmitry A. Afonnikov, Mikhail P. Ponomarenko, Luciano Milanesi, Nikolay A. Kolchanov
2002	J	`jnl`	Computer system "Gene Discovery" for promoter structure analysis. Silico Biol. Evgenii E. Vityaev, Yuri L. Orlov, Oleg V. Vishnevsky, Mikhail A. Pozdnyakov, Nikolay A. Kolchanov
2002	J	`jnl`	Construction of stochastic context trees for genetical texts. Silico Biol. Yuri L. Orlov, V. P. Filippov, Vladimir N. Potapov, Nikolay A. Kolchanov
2002	—	`conf`	Gene Networks Description and Modeling in the GeneNet System. Gene Regulations and Metabolism Nikolay A. Kolchanov, Elena A. Ananko, Vitali A. Likhoshvai, Olga A. Podkolodnaya, Elena V. Ignatieva, Alexander V. Ratushny, Yuri G. Matushkin
2002	J	`jnl`	GeneNet database: description and modeling of gene networks. Silico Biol. Nikolay A. Kolchanov, Eugenia A. Nedosekina, Elena A. Ananko, Vitali A. Likhoshvai, Nikolay L. Podkolodny, Alexander V. Ratushny, Irina L. Stepanenko, Olga A. Podkolodnaya, Elena V. Ignatieva, Yuri G. Matushkin
2002	J	`jnl`	GeneNet: a database on structure and functional organisation of gene networks. Nucleic Acids Res. Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Elena V. Ignatieva, Olga A. Podkolodnaya, Nikolay A. Kolchanov
2002	J	`jnl`	Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface). Silico Biol. Ralf Hofestädt, Nikolay A. Kolchanov, John Reinitz
2002	J	`jnl`	Transcription Regulatory Regions Database (TRRD): its status in 2002. Nucleic Acids Res. Nikolay A. Kolchanov, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Irina L. Stepanenko, Tatyana I. Merkulova, Mikhail A. Pozdnyakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko
2001	J	`jnl`	ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another. Nucleic Acids Res. Julia V. Ponomarenko, Dagmara P. Furman, Anatoly S. Frolov, Nikolay L. Podkolodny, Galina Orlova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov, Akinori Sarai
2001	—	`conf`	Construction of stochastic context trees for genetical texts. German Conference on Bioinformatics Yuri L. Orlov, V. P. Filippov, Vladimir N. Potapov, Nikolay A. Kolchanov
2001	J	`jnl`	Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions. Bioinform. Dmitry A. Afonnikov, Dmitry Yu. Oshchepkov, Nikolay A. Kolchanov
2001	J	`jnl`	Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis. Bioinform. Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, Nikolay L. Podkolodny
2001	J	`jnl`	Nucleosome formation potential of exons, introns, and Alu repeats. Bioinform. Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, Nikolay L. Podkolodny
2001	—	`conf`	Program "Gene Discovery" for Pattern Matching in Promoter Sequences. German Conference on Bioinformatics Yuri L. Orlov, Evgenii E. Vityaev, Oleg V. Vishnevsky, A. S. Belenok, Boris Kovalerchuk, Mikhail A. Pozdnyakov, Nikolay A. Kolchanov
2001	J	`jnl`	The 2nd international conference on the Bioinformatics of Genome Regulation and Structure (BGRS-2000), Novosibirsk, August 2000. Bioinform. Nikolay A. Kolchanov, Charlie Hodgman
2000	J	`jnl`	COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation. Nucleic Acids Res. Olga V. Kel-Margoulis, Aida G. Romashchenko, Nikolay A. Kolchanov, Edgar Wingender, Alexander E. Kel
2000	J	`jnl`	Methods for integration of heterogeneous information resources in molecular biology in the digital library GeneExpress. Program. Comput. Softw. Fedor A. Kolpakov, N. L. Podkolodnyi, Sergey V. Lavryushev, Dmitry A. Grigorovich, Mikhail P. Ponomarenko, Nikolay A. Kolchanov
2000	J	`jnl`	SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation. Nucleic Acids Res. Julia V. Ponomarenko, Galina Orlova, Mikhail P. Ponomarenko, Sergey V. Lavryushev, Anatoly S. Frolov, Svetlana V. Zybova, Nikolay A. Kolchanov
2000	J	`jnl`	Transcription Regulatory Regions Database (TRRD): its status in 2000. Nucleic Acids Res. Nikolay A. Kolchanov, Olga A. Podkolodnaya, Elena A. Ananko, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, Fedor A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, I. M. Korostishevskaya, Aida G. Romashchenko, G. Christian Overton
1999	J	`jnl`	Conformational and physicochemical DNA features specific for transcription factor binding sites. Bioinform. Julia V. Ponomarenko, Mikhail P. Ponomarenko, Anatoly S. Frolov, Denis G. Vorobiev, G. Christian Overton, Nikolay A. Kolchanov
1999	J	`jnl`	Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins. Bioinform. Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Nikolay L. Podkolodny, Ludmila K. Savinkova, Nikolay A. Kolchanov, G. Christian Overton
1999	J	`jnl`	Integrated databases and computer systems for studying eukaryotic gene expression. Bioinform. Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, Fedor A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Yury V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton
1999	J	`jnl`	Nucleosomal DNA property database. Bioinform. Victor G. Levitsky, Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Nikolay A. Kolchanov
1999	J	`jnl`	Oligonucleotide frequency matrices addressed to recognizing functional DNA sites. Bioinform. Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Olga A. Podkolodnaya, Denis G. Vorobiev, Nikolay A. Kolchanov, G. Christian Overton
1999	J	`jnl`	Prediction of eukaryotic mRNA translational properties. Bioinform. Alexey V. Kochetov, Mikhail P. Ponomarenko, Anatoly S. Frolov, L. L. Kisselev, Nikolay A. Kolchanov
1999	J	`jnl`	Transcription Regulatory Regions Database (TRRD): its status in 1999. Nucleic Acids Res. Nikolay A. Kolchanov, Elena A. Ananko, Olga A. Podkolodnaya, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, Fedor A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko
1998	—	`conf`	Combinatorial identification of promoters induced upon immune cell activation. German Conference on Bioinformatics Alexander E. Kel, Olga V. Kel-Margoulis, Vladimir N. Babenko, Nikolay A. Kolchanov, Edgar Wingender
1998	J	`jnl`	Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Res. T. Heinemeyer, Edgar Wingender, Ingmar Reuter, Henning Hermjakob, Alexander E. Kel, Olga V. Kel-Margoulis, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Fedor A. Kolpakov, Nikolay L. Podkolodny, Nikolay A. Kolchanov
1998	A	`conf`	GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. ISMB Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Yury V. Kondrakhin, Anatoly S. Frolov, Fedor A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer
1998	J	`jnl`	GeneNet: a gene network database and its automated visualization. Bioinform. Fedor A. Kolpakov, Elena A. Ananko, G. B. Kolesov, Nikolay A. Kolchanov
1997	—	`conf`	Detecting direct correlations between positions in multiple alignments of amino acid sequences. German Conference on Bioinformatics Dmitry A. Afonnikov, Yury V. Kondrakhin, Igor I. Titov, Nikolay A. Kolchanov
1997	J	`jnl`	Generating Programs for Predicting the Activity of Functional Sites. J. Comput. Biol. Mikhail P. Ponomarenko, A. N. Kolchanova, Nikolay A. Kolchanov
1997	—	`conf`	Identification of the significant conformational features of functional sites in B-DNA. German Conference on Bioinformatics Mikhail P. Ponomarenko, Julia V. Ponomarenko, Alexander E. Kel, Nikolay A. Kolchanov, N. Karas, Edgar Wingender, Heinz Sklenar
1997	—	`conf`	Lipid Metabolism Transcription Regulatory Regions Database (LM-TRRD). German Conference on Bioinformatics Elena V. Ignatieva, Alexander E. Kel, Nikolay A. Kolchanov
1997	J	`jnl`	TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation. Nucleic Acids Res. Edgar Wingender, Alexander E. Kel, Olga V. Kel-Margoulis, Holger Karas, T. Heinemeyer, P. Dietze, Rainer Knüppel, Aida G. Romashchenko, Nikolay A. Kolchanov
1996	—	`conf`	Comparative Analysis of the Secondary Structure of mRNA Encoded by High- and Low-Expression Eukaryotic Genes. German Conference on Bioinformatics I. V. Ischenko, Alexey V. Kochetov, Alexander E. Kel, Nikolay A. Kolchanov, L. L. Kisselev
1996	—	`conf`	Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes. German Conference on Bioinformatics Yury V. Kondrakhin, Fedor A. Kolpakov, Alexander E. Kel, Nikolay A. Kolchanov, Luciano Milanesi
1996	J	`jnl`	Gene structure prediction using information on homologous protein sequence. Comput. Appl. Biosci. Igor B. Rogozin, Luciano Milanesi, Nikolay A. Kolchanov
1996	—	`conf`	Genetic Algorithm for Selection of Oligonucleotides for Identification by Hybridisation of Genomic DNA Fragments Possessing Gene Potential. German Conference on Bioinformatics Alexander E. Kel, M. Philipenko, Vladimir N. Babenko, Nikolay A. Kolchanov
1996	—	`conf`	TRRD and COMPEL Databases an Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences. German Conference on Bioinformatics Alexander E. Kel, O. V. Kel, I. V. Ischenko, Nikolay A. Kolchanov, Holger Karas, Edgar Wingender, Heinz Sklenar
1996	—	`conf`	TRRD and COMPEL Databases on Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences. German Conference on Bioinformatics - Selected Papers Alexander E. Kel, O. V. Kel, Oleg V. Vishnevsky, Mikhail P. Ponomarenko, I. V. Ischenko, Holger Karas, Edgar Wingender, Nikolay A. Kolchanov, Heinz Sklenar
1996	—	`conf`	WWWTRRD: Hypertext Information System an Transcription Regulation. German Conference on Bioinformatics Elena A. Ananko, Elena V. Ignatieva, Alexander E. Kel, Nikolay A. Kolchanov
1995	A	`conf`	Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences. ISMB Alexander E. Kel, Yury V. Kondrakhin, Ph. A. Kolpakov, O. V. Kel, Aida G. Romashchenko, Edgar Wingender, Luciano Milanesi, Nikolay A. Kolchanov
1995	—	`conf`	Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes. HICSS (5) O. V. Kel, A. G. Romachenko, Alexander E. Kel, Andrey N. Naumochkin, Nikolay A. Kolchanov
1995	J	`jnl`	Eukaryotic promoter recognition by binding sites for transcription factors. Comput. Appl. Biosci. Yury V. Kondrakhin, Alexander E. Kel, Nikolay A. Kolchanov, Aida G. Romashchenko, Luciano Milanesi
1995	A	`conf`	Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application. ISMB Nikolay A. Kolchanov, Oleg V. Vishnevsky, Vladimir N. Babenko, Alexander E. Kel, Ilya N. Shindyalov
1994	J	`jnl`	Construction of a generalized consensus matrix for recognition of vertebrate pre-mRNA 3'-terminal processing sites. Comput. Appl. Biosci. Yury V. Kondrakhin, V. V. Shamin, Nikolay A. Kolchanov
1993	J	`jnl`	SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites. Comput. Appl. Biosci. Alexander E. Kel, Mikhail P. Ponomarenko, E. A. Likhachev, Yuri L. Orlov, I. V. Ischenko, Luciano Milanesi, Nikolay A. Kolchanov
1992	J	`jnl`	Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices. Comput. Appl. Biosci. Victor B. Strelets, Ilya N. Shindyalov, Nikolay A. Kolchanov, Luciano Milanesi