Nikolai Nøjgaard

18 papers A 1C 1Misc 1Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
Automated Inference of Graph Transformation Rules.
CoRR
Jakob L. Andersen, Akbar Davoodi, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard
2022 J jnl
Characterizing Catalytic Mechanisms with Overlay Graphs.
CoRR
Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard
2022 J jnl
Efficient Modular Graph Transformation Rule Application.
CoRR
Jakob L. Andersen, Rolf Fagerberg, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard
2022 J jnl
Generic Context-Aware Group Contributions.
IEEE ACM Trans. Comput. Biol. Bioinform.
Christoph Flamm, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Peter F. Stadler
2022 J jnl
Representing Catalytic Mechanisms with Rule Composition.
J. Chem. Inf. Model.
Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard
2021 J jnl
Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry.
CoRR
Nikolai Nøjgaard, Walter Fontana, Marc Hellmuth, Daniel Merkle
2021 J jnl
Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry.
J. Comput. Biol.
Nikolai Nøjgaard, Walter Fontana, Marc Hellmuth, Daniel Merkle
2021 J jnl
Graph Transformation for Enzymatic Mechanisms.
CoRR
Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard
2021 J jnl
Graph transformation for enzymatic mechanisms.
Bioinform.
Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard
2020 — conf
A Graph-Based Tool to Embed the π-Calculus into a Computational DPO Framework.
SOFSEM (Doctoral Student Research Forum)
Jakob Lykke Andersen, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Marco Peressotti
2020 — conf
Atom Tracking Using Cayley Graphs.
ISBRA
Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard
2019 J jnl
A Graph-Based Tool to Embed the π-Calculus into a Computational DPO Framework.
CoRR
Jakob Lykke Andersen, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Marco Peressotti
2018 A conf
Linear Time Canonicalization and Enumeration of Non-Isomorphic 1-Face Embeddings.
ALENEX
Marc Hellmuth, Anders S. Knudsen, Michal Kotrbcík, Daniel Merkle, Nikolai Nøjgaard
2018 Misc conf
Partial Homology Relations - Satisfiability in Terms of Di-Cographs.
COCOON
Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth
2018 J jnl
Time-consistent reconciliation maps and forbidden time travel.
Algorithms Mol. Biol.
Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
2017 C conf
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps.
WABI
Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
2017 J jnl
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps.
CoRR
Nikolai Nøjgaard, Manuela Geiß, Peter F. Stadler, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth
2017 J jnl
Partial Orthology, Paralogy and Xenology Relations - Satisfiability in terms of Di-Cographs.
CoRR
Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth