Nikita Alexeev

18 papers Misc 1Journal 11Unranked 6
YearRankTypeTitle / Venue / Authors
2022 — conf
Chromothripsis Rearrangements Are Informed by 3D-Genome Organization.
RECOMB-CG
Natalia Petukhova, Alexey Zabelkin, Vitaly Dravgelis, Sergey Aganezov, Nikita Alexeev
2022 J jnl
Orienting Ordered Scaffolds: Complexity and Algorithms.
SN Comput. Sci.
Sergey Aganezov, Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
2022 J jnl
PaReBrick: PArallel REarrangements and BReaks identification toolkit.
Bioinform.
Alexey Zabelkin, Yulia Yakovleva, Olga Bochkareva, Nikita Alexeev
2020 J jnl
A unified ILP framework for core ancestral genome reconstruction problems.
Bioinform.
Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
2020 J jnl
Markov chain Monte Carlo for active module identification problem.
BMC Bioinform.
Nikita Alexeev, Javlon E. Isomurodov, Vladimir Sukhov, Gennady Korotkevich, Alexey A. Sergushichev
2019 J jnl
Orienting Ordered Scaffolds: Complexity and Algorithms.
CoRR
Sergey Aganezov, Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
2019 J jnl
Recovering rearranged cancer chromosomes from karyotype graphs.
BMC Bioinform.
Sergey Aganezov, Ilya Zban, Vitaly Aksenov, Nikita Alexeev, Michael C. Schatz
2018 J jnl
Combinatorial Scoring of Phylogenetic Trees and Networks Based on Homoplasy-Free Characters.
J. Comput. Biol.
Nikita Alexeev, Max A. Alekseyev
2018 — conf
Estimation of the True Evolutionary Distance Under the INFER Model.
RECOMB-CG
Alexey Zabelkin, Nikita Alexeev
2017 — conf
A Unified ILP Framework for Genome Median, Halving, and Aliquoting Problems Under DCJ.
RECOMB-CG
Pavel Avdeyev, Nikita Alexeev, Yongwu Rong, Max A. Alekseyev
2017 J jnl
Generalized Hultman Numbers and Cycle Structures of Breakpoint Graphs.
J. Comput. Biol.
Nikita Alexeev, Anna Pologova, Max A. Alekseyev
2016 Misc conf
Combinatorial Scoring of Phylogenetic Networks.
COCOON
Nikita Alexeev, Max A. Alekseyev
2016 J jnl
Combinatorial Scoring of Phylogenetic Networks.
CoRR
Nikita Alexeev, Max A. Alekseyev
2016 J jnl
Comparative genomics meets topology: a novel view on genome median and halving problems.
BMC Bioinform.
Nikita Alexeev, Pavel Avdeyev, Max A. Alekseyev
2015 — conf
A Computational Method for the Rate Estimation of Evolutionary Transpositions.
IWBBIO (1)
Nikita Alexeev, Rustem Aidagulov, Max A. Alekseyev
2015 — conf
Estimation of the true evolutionary distance under the fragile breakage model.
ICCABS
Nikita Alexeev, Max A. Alekseyev
2015 — conf
Generalized Hultman Numbers and the Distribution of Multi-break Distances.
AlCoB
Nikita Alexeev, Anna Pologova, Max A. Alekseyev
2014 J jnl
Random Matrix Approach to the Distribution of Genomic Distance.
J. Comput. Biol.
Nikita Alexeev, Peter Zograf