Nika Mansouri-Ghiasi

52 papers A* 16A 2Journal 33Unranked 1
YearRankTypeTitle / Venue / Authors
2026 A* conf
Conduit: Programmer-Transparent Near-Data Processing Using Multiple Compute-Capable Resources in Solid State Drives.
HPCA
Rakesh Nadig, Vamanan Arulchelvan, Mayank Kabra, Harshita Gupta, Rahul Bera, Nika Mansouri-Ghiasi, Nanditha Rao, Qingcai Jiang, Andreas Kosmas Kakolyris, Yu Liang, Mohammad Sadrosadati, Onur Mutlu
2026 J jnl
Conduit: Programmer-Transparent Near-Data Processing Using Multiple Compute-Capable Resources in Solid State Drives.
CoRR
Rakesh Nadig, Vamanan Arulchelvan, Mayank Kabra, Harshita Gupta, Rahul Bera, Nika Mansouri-Ghiasi, Nanditha Rao, Qingcai Jiang, Andreas Kosmas Kakolyris, Yu Liang, Mohammad Sadrosadati, Onur Mutlu
2026 A* conf
GenPairX: A Hardware-Algorithm Co-Designed Accelerator for Paired-End Read Mapping.
HPCA
Julien Eudine, Chu Li, Zhuo Cheng, Renzo Andri, Can Firtina, Mohammad Sadrosadati, Nika Mansouri-Ghiasi, Konstantina Koliogeorgi, Anirban Nag, Arash Tavakkol, Haiyu Mao, Onur Mutlu, Shai Bergman, Ji Zhang
2026 J jnl
GenPairX: A Hardware-Algorithm Co-Designed Accelerator for Paired-End Read Mapping.
CoRR
Julien Eudine, Chu Li, Zhuo Cheng, Renzo Andri, Can Firtina, Mohammad Sadrosadati, Nika Mansouri-Ghiasi, Konstantina Koliogeorgi, Anirban Nag, Arash Tavakkol, Haiyu Mao, Onur Mutlu, Shai Bergman, Ji Zhang
2026 J jnl
Rawsamble: overlapping raw nanopore signals using a hash-based seeding mechanism.
Bioinform.
Can Firtina, Maximilian Mordig, Harun Mustafa, Sayan Goswami, Nika Mansouri-Ghiasi, Stefano Mercogliano, Furkan Eris, Joël Lindegger, André Kahles, Onur Mutlu
2026 A* conf
SAGe: A Lightweight Algorithm-Architecture Co-Design for Mitigating the Data Preparation Bottleneck in Large-Scale Genome Sequence Analysis.
HPCA
Nika Mansouri-Ghiasi, Talu Güloglu, Harun Mustafa, Can Firtina, Konstantina Koliogeorgi, Konstantinos Kanellopoulos, Haiyu Mao, Rakesh Nadig, Mohammad Sadrosadati, Jisung Park, Onur Mutlu
2025 J jnl
A decentralized future for the open-science databases.
CoRR
Gaurav Sharma, Viorel Munteanu, Nika Mansouri-Ghiasi, Jineta Banerjee, Susheel Varma, Luca Foschini, Kyle Ellrott, Onur Mutlu, Dumitru Ciorba, Roel A. Ophoff, Viorel Bostan, Christopher E. Mason, Jason H. Moore, Despoina Sousoni, Arunkumar Krishnan, Mihai Dimian, Gustavo Stolovitzky, Fabio G. Liberante, Taras K. Oleksyk, Serghei Mangul
2025 A* conf
Ariadne: A Hotness-Aware and Size-Adaptive Compressed Swap Technique for Fast Application Relaunch and Reduced CPU Usage on Mobile Devices.
HPCA
Yu Liang, Aofeng Shen, Chun Jason Xue, Riwei Pan, Haiyu Mao, Nika Mansouri-Ghiasi, Qingcai Jiang, Rakesh Nadig, Lei Li, Rachata Ausavarungnirun, Mohammad Sadrosadati, Onur Mutlu
2025 J jnl
Ariadne: A Hotness-Aware and Size-Adaptive Compressed Swap Technique for Fast Application Relaunch and Reduced CPU Usage on Mobile Devices.
CoRR
Yu Liang, Aofeng Shen, Chun Jason Xue, Riwei Pan, Haiyu Mao, Nika Mansouri-Ghiasi, Qingcai Jiang, Rakesh Nadig, Lei Li, Rachata Ausavarungnirun, Mohammad Sadrosadati, Onur Mutlu
2025 A conf
MARS: Processing-In-Memory Acceleration of Raw Signal Genome Analysis Inside the Storage Subsystem.
ICS
Melina Soysal, Konstantina Koliogeorgi, Can Firtina, Nika Mansouri-Ghiasi, Rakesh Nadig, Haiyu Mao, Geraldo Francisco de Oliveira Junior, Yu Liang, Klea Zambaku, Mohammad Sadrosadati, Onur Mutlu
2025 J jnl
MARS: Processing-In-Memory Acceleration of Raw Signal Genome Analysis Inside the Storage Subsystem.
CoRR
Melina Soysal, Konstantina Koliogeorgi, Can Firtina, Nika Mansouri-Ghiasi, Rakesh Nadig, Haiyu Mao, Geraldo F. Oliveira, Yu Liang, Klea Zambaku, Mohammad Sadrosadati, Onur Mutlu
2025 A* conf
REIS: A High-Performance and Energy-Efficient Retrieval System with In-Storage Processing.
ISCA
Kangqi Chen, Rakesh Nadig, Manos Frouzakis, Nika Mansouri-Ghiasi, Yu Liang, Haiyu Mao, Jisung Park, Mohammad Sadrosadati, Onur Mutlu
2025 J jnl
REIS: A High-Performance and Energy-Efficient Retrieval System with In-Storage Processing.
CoRR
Kangqi Chen, Andreas Kosmas Kakolyris, Rakesh Nadig, Manos Frouzakis, Nika Mansouri-Ghiasi, Yu Liang, Haiyu Mao, Jisung Park, Mohammad Sadrosadati, Onur Mutlu
2025 A conf
Revisiting Main Memory-Based Covert and Side Channel Attacks in the Context of Processing-in-Memory.
DSN
F. Nisa Bostanci, Konstantinos Kanellopoulos, Ataberk Olgun, A. Giray Yaglikçi, Ismail Emir Yüksel, Nika Mansouri-Ghiasi, Zülal Bingöl, Mohammad Sadrosadati, Onur Mutlu
2025 J jnl
SAGe: A Lightweight Algorithm-Architecture Co-Design for Mitigating the Data Preparation Bottleneck in Large-Scale Genome Analysis.
CoRR
Nika Mansouri-Ghiasi, Talu Güloglu, Harun Mustafa, Can Firtina, Konstantina Koliogeorgi, Konstantinos Kanellopoulos, Haiyu Mao, Rakesh Nadig, Mohammad Sadrosadati, Jisung Park, Onur Mutlu
2024 J jnl
Amplifying Main Memory-Based Timing Covert and Side Channels using Processing-in-Memory Operations.
CoRR
Konstantinos Kanellopoulos, F. Nisa Bostanci, Ataberk Olgun, Abdullah Giray Yaglikçi, Ismail Emir Yuksel, Nika Mansouri-Ghiasi, Zülal Bingöl, Mohammad Sadrosadati, Onur Mutlu
2024 J jnl
Label-guided seed-chain-extend alignment on annotated De Bruijn graphs.
Bioinform.
Harun Mustafa, Mikhail Karasikov, Nika Mansouri-Ghiasi, Gunnar Rätsch, André Kahles
2024 J jnl
MATSA: An MRAM-Based Energy-Efficient Accelerator for Time Series Analysis.
IEEE Access
Ivan Fernandez, Christina Giannoula, Aditya Manglik, Ricardo Quislant, Nika Mansouri-Ghiasi, Juan Gómez-Luna, Eladio Gutiérrez, Oscar G. Plata, Onur Mutlu
2024 A* conf
MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing.
ISCA
Nika Mansouri-Ghiasi, Mohammad Sadrosadati, Harun Mustafa, Arvid Gollwitzer, Can Firtina, Julien Eudine, Haiyu Mao, Joël Lindegger, Meryem Banu Cavlak, Mohammed Alser, Jisung Park, Onur Mutlu
2024 J jnl
MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing.
CoRR
Nika Mansouri-Ghiasi, Mohammad Sadrosadati, Harun Mustafa, Arvid Gollwitzer, Can Firtina, Julien Eudine, Haiyu Mao, Joël Lindegger, Meryem Banu Cavlak, Mohammed Alser, Jisung Park, Onur Mutlu
2024 J jnl
RawAlign: Accurate, Fast, and Scalable Raw Nanopore Signal Mapping via Combining Seeding and Alignment.
IEEE Access
Joël Lindegger, Can Firtina, Nika Mansouri-Ghiasi, Mohammad Sadrosadati, Mohammed Alser, Onur Mutlu
2023 J jnl
ALP: Alleviating CPU-Memory Data Movement Overheads in Memory-Centric Systems.
IEEE Trans. Emerg. Top. Comput.
Nika Mansouri-Ghiasi, Nandita Vijaykumar, Geraldo F. Oliveira, Lois Orosa, Ivan Fernandez, Mohammad Sadrosadati, Konstantinos Kanellopoulos, Nastaran Hajinazar, Juan Gómez-Luna, Onur Mutlu
2023 J jnl
MetaStore: High-Performance Metagenomic Analysis via In-Storage Computing.
CoRR
Nika Mansouri-Ghiasi, Mohammad Sadrosadati, Harun Mustafa, Arvid Gollwitzer, Can Firtina, Julien Eudine, Haiyu Mao, Joël Lindegger, Meryem Banu Cavlak, Mohammed Alser, Jisung Park, Onur Mutlu
2023 J jnl
RawHash: enabling fast and accurate real-time analysis of raw nanopore signals for large genomes.
Bioinform.
Can Firtina, Nika Mansouri-Ghiasi, Joël Lindegger, Gagandeep Singh, Meryem Banu Cavlak, Haiyu Mao, Onur Mutlu
2023 J jnl
Scrooge: a fast and memory-frugal genomic sequence aligner for CPUs, GPUs, and ASICs.
Bioinform.
Joël Lindegger, Damla Senol Cali, Mohammed Alser, Juan Gómez-Luna, Nika Mansouri-Ghiasi, Onur Mutlu
2023 A* conf
Venice: Improving Solid-State Drive Parallelism at Low Cost via Conflict-Free Accesses.
ISCA
Rakesh Nadig, Mohammad Sadrosadati, Haiyu Mao, Nika Mansouri-Ghiasi, Arash Tavakkol, Jisung Park, Hamid Sarbazi-Azad, Juan Gómez-Luna, Onur Mutlu
2023 J jnl
Venice: Improving Solid-State Drive Parallelism at Low Cost via Conflict-Free Accesses.
CoRR
Rakesh Nadig, Mohammad Sadrosadati, Haiyu Mao, Nika Mansouri-Ghiasi, Arash Tavakkol, Jisung Park, Hamid Sarbazi-Azad, Juan Gómez-Luna, Onur Mutlu
2022 J jnl
ALP: Alleviating CPU-Memory Data Movement Overheads in Memory-Centric Systems.
CoRR
Nika Mansouri-Ghiasi, Nandita Vijaykumar, Geraldo F. Oliveira, Lois Orosa, Ivan Fernandez, Mohammad Sadrosadati, Konstantinos Kanellopoulos, Nastaran Hajinazar, Juan Gómez-Luna, Onur Mutlu
2022 J jnl
Accelerating Time Series Analysis via Processing using Non-Volatile Memories.
CoRR
Ivan Fernandez, Aditya Manglik, Christina Giannoula, Ricardo Quislant, Nika Mansouri-Ghiasi, Juan Gómez-Luna, Eladio Gutiérrez, Oscar G. Plata, Onur Mutlu
2022 J jnl
GenStore: A High-Performance and Energy-Efficient In-Storage Computing System for Genome Sequence Analysis.
CoRR
Nika Mansouri-Ghiasi, Jisung Park, Harun Mustafa, Jeremie S. Kim, Ataberk Olgun, Arvid Gollwitzer, Damla Senol Cali, Can Firtina, Haiyu Mao, Nour Almadhoun Alserr, Rachata Ausavarungnirun, Nandita Vijaykumar, Mohammed Alser, Onur Mutlu
2022 — conf
GenStore: In-Storage Filtering of Genomic Data for High-Performance and Energy-Efficient Genome Analysis.
ISVLSI
Nika Mansouri-Ghiasi, Jisung Park, Harun Mustafa, Jeremie S. Kim, Ataberk Olgun, Arvid Gollwitzer, Damla Senol Cali, Can Firtina, Haiyu Mao, Nour Almadhoun Alserr, Rachata Ausavarungnirun, Nandita Vijaykumar, Mohammed Alser, Onur Mutlu
2022 A* conf
GenStore: a high-performance in-storage processing system for genome sequence analysis.
ASPLOS
Nika Mansouri-Ghiasi, Jisung Park, Harun Mustafa, Jeremie S. Kim, Ataberk Olgun, Arvid Gollwitzer, Damla Senol Cali, Can Firtina, Haiyu Mao, Nour Almadhoun Alserr, Rachata Ausavarungnirun, Nandita Vijaykumar, Mohammed Alser, Onur Mutlu
2022 J jnl
RevaMp3D: Architecting the Processor Core and Cache Hierarchy for Systems with Monolithically-Integrated Logic and Memory.
CoRR
Nika Mansouri-Ghiasi, Mohammad Sadrosadati, Geraldo F. Oliveira, Konstantinos Kanellopoulos, Rachata Ausavarungnirun, Juan Gómez-Luna, Aditya Manglik, João Dinis Ferreira, Jeremie S. Kim, Christina Giannoula, Nandita Vijaykumar, Jisung Park, Onur Mutlu
2022 J jnl
Scrooge: A Fast and Memory-Frugal Genomic Sequence Aligner for CPUs, GPUs, and ASICs.
CoRR
Joël Lindegger, Damla Senol Cali, Mohammed Alser, Juan Gómez-Luna, Nika Mansouri-Ghiasi, Onur Mutlu
2022 J jnl
SeGraM: A Universal Hardware Accelerator for Genomic Sequence-to-Graph and Sequence-to-Sequence Mapping.
CoRR
Damla Senol Cali, Konstantinos Kanellopoulos, Joël Lindegger, Zülal Bingöl, Gurpreet S. Kalsi, Ziyi Zuo, Can Firtina, Meryem Banu Cavlak, Jeremie S. Kim, Nika Mansouri-Ghiasi, Gagandeep Singh, Juan Gómez-Luna, Nour Almadhoun Alserr, Mohammed Alser, Sreenivas Subramoney, Can Alkan, Saugata Ghose, Onur Mutlu
2022 A* conf
SeGraM: a universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping.
ISCA
Damla Senol Cali, Konstantinos Kanellopoulos, Joël Lindegger, Zülal Bingöl, Gurpreet S. Kalsi, Ziyi Zuo, Can Firtina, Meryem Banu Cavlak, Jeremie S. Kim, Nika Mansouri-Ghiasi, Gagandeep Singh, Juan Gómez-Luna, Nour Almadhoun Alserr, Mohammed Alser, Sreenivas Subramoney, Can Alkan, Saugata Ghose, Onur Mutlu
2022 J jnl
TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering.
CoRR
Meryem Banu Cavlak, Gagandeep Singh, Mohammed Alser, Can Firtina, Joël Lindegger, Mohammad Sadrosadati, Nika Mansouri-Ghiasi, Can Alkan, Onur Mutlu
2022 J jnl
TuRaN: True Random Number Generation Using Supply Voltage Underscaling in SRAMs.
CoRR
Ismail Emir Yüksel, Ataberk Olgun, Behzad Salami, F. Nisa Bostanci, Yahya Can Tugrul, Abdullah Giray Yaglikçi, Nika Mansouri-Ghiasi, Onur Mutlu, Oguz Ergin
2021 A* conf
CODIC: A Low-Cost Substrate for Enabling Custom In-DRAM Functionalities and Optimizations.
ISCA
Lois Orosa, Yaohua Wang, Mohammad Sadrosadati, Jeremie S. Kim, Minesh Patel, Ivan Puddu, Haocong Luo, Kaveh Razavi, Juan Gómez-Luna, Hasan Hassan, Nika Mansouri-Ghiasi, Saugata Ghose, Onur Mutlu
2021 J jnl
CODIC: A Low-Cost Substrate for Enabling Custom In-DRAM Functionalities and Optimizations.
CoRR
Lois Orosa, Yaohua Wang, Mohammad Sadrosadati, Jeremie S. Kim, Minesh Patel, Ivan Puddu, Haocong Luo, Kaveh Razavi, Juan Gómez-Luna, Hasan Hassan, Nika Mansouri-Ghiasi, Saugata Ghose, Onur Mutlu
2021 J jnl
SIMDRAM: An End-to-End Framework for Bit-Serial SIMD Computing in DRAM.
CoRR
Nastaran Hajinazar, Geraldo F. Oliveira, Sven Gregorio, João Dinis Ferreira, Nika Mansouri-Ghiasi, Minesh Patel, Mohammed Alser, Saugata Ghose, Juan Gómez-Luna, Onur Mutlu
2021 A* conf
SIMDRAM: a framework for bit-serial SIMD processing using DRAM.
ASPLOS
Nastaran Hajinazar, Geraldo F. Oliveira, Sven Gregorio, João Dinis Ferreira, Nika Mansouri-Ghiasi, Minesh Patel, Mohammed Alser, Saugata Ghose, Juan Gómez-Luna, Onur Mutlu
2020 A* conf
FIGARO: Improving System Performance via Fine-Grained In-DRAM Data Relocation and Caching.
MICRO
Yaohua Wang, Lois Orosa, Xiangjun Peng, Yang Guo, Saugata Ghose, Minesh Patel, Jeremie S. Kim, Juan Gómez-Luna, Mohammad Sadrosadati, Nika Mansouri-Ghiasi, Onur Mutlu
2020 J jnl
FIGARO: Improving System Performance via Fine-Grained In-DRAM Data Relocation and Caching.
CoRR
Yaohua Wang, Lois Orosa, Xiangjun Peng, Yang Guo, Saugata Ghose, Minesh Patel, Jeremie S. Kim, Juan Gómez-Luna, Mohammad Sadrosadati, Nika Mansouri-Ghiasi, Onur Mutlu
2020 J jnl
SIMDRAM: A Framework for Bit-Serial SIMD Processing Using DRAM.
CoRR
Nastaran Hajinazar, Geraldo F. Oliveira, Sven Gregorio, João Dinis Ferreira, Nika Mansouri-Ghiasi, Minesh Patel, Mohammed Alser, Saugata Ghose, Juan Gómez-Luna, Onur Mutlu
2019 A* conf
CROW: a low-cost substrate for improving DRAM performance, energy efficiency, and reliability.
ISCA
Hasan Hassan, Minesh Patel, Jeremie S. Kim, Abdullah Giray Yaglikçi, Nandita Vijaykumar, Nika Mansouri-Ghiasi, Saugata Ghose, Onur Mutlu
2019 J jnl
Dataplant: In-DRAM Security Mechanisms for Low-Cost Devices.
CoRR
Lois Orosa, Yaohua Wang, Ivan Puddu, Mohammad Sadrosadati, Kaveh Razavi, Juan Gómez-Luna, Hasan Hassan, Nika Mansouri-Ghiasi, Arash Tavakkol, Minesh Patel, Jeremie S. Kim, Vivek Seshadri, Uksong Kang, Saugata Ghose, Rodolfo Azevedo, Onur Mutlu
2019 A* conf
SMASH: Co-designing Software Compression and Hardware-Accelerated Indexing for Efficient Sparse Matrix Operations.
MICRO
Konstantinos Kanellopoulos, Nandita Vijaykumar, Christina Giannoula, Roknoddin Azizi, Skanda Koppula, Nika Mansouri-Ghiasi, Taha Shahroodi, Juan Gómez-Luna, Onur Mutlu
2019 J jnl
SMASH: Co-designing Software Compression and Hardware-Accelerated Indexing for Efficient Sparse Matrix Operations.
CoRR
Konstantinos Kanellopoulos, Nandita Vijaykumar, Christina Giannoula, Roknoddin Azizi, Skanda Koppula, Nika Mansouri-Ghiasi, Taha Shahroodi, Juan Gómez-Luna, Onur Mutlu
2018 A* conf
FLIN: Enabling Fairness and Enhancing Performance in Modern NVMe Solid State Drives.
ISCA
Arash Tavakkol, Mohammad Sadrosadati, Saugata Ghose, Jeremie S. Kim, Yixin Luo, Yaohua Wang, Nika Mansouri-Ghiasi, Lois Orosa, Juan Gómez-Luna, Onur Mutlu
2018 A* conf
Reducing DRAM Latency via Charge-Level-Aware Look-Ahead Partial Restoration.
MICRO
Yaohua Wang, Arash Tavakkol, Lois Orosa, Saugata Ghose, Nika Mansouri-Ghiasi, Minesh Patel, Jeremie S. Kim, Hasan Hassan, Mohammad Sadrosadati, Onur Mutlu
2017 J jnl
Efficient Critical Path Identification Based on Viability Analysis Method Considering Process Variations.
IEEE Trans. Very Large Scale Integr. Syst.
Sheis Abolma'ali, Nika Mansouri-Ghiasi, Mehdi Kamal, Ali Afzali-Kusha, Massoud Pedram