Niina Haiminen

23 papers A* 1A 2C 1Misc 1Journal 15Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
AutoXAI4Omics: an automated explainable AI tool for omics and tabular data.
Briefings Bioinform.
James Strudwick, Laura-Jayne Gardiner, Kate Denning-James, Niina Haiminen, Ashley Evans, Jennifer Kelly, Matthew Madgwick, Filippo Utro, Ed Seabolt, Christopher Gibson, Bharat Bedi, Daniel Clayton, Ciaron Howell, Laxmi Parida, Anna Paola Carrieri
2020 — conf
A Topological Data Analysis Approach on Predicting Phenotypes from Gene Expression Data.
AlCoB
Sayan Mandal, Aldo Guzmán-Sáenz, Niina Haiminen, Saugata Basu, Laxmi Parida
2020 J jnl
Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data.
CoRR
Lingjing Jiang, Niina Haiminen, Anna Paola Carrieri, Shi Huang, Yoshiki Vazquez-Baeza, Laxmi Parida, Ho-Cheol Kim, Austin D. Swafford, Rob Knight, Loki Natarajan
2019 J jnl
Haplotype assembly of autotetraploid potato using integer linear programing.
Bioinform.
Enrico Siragusa, Niina Haiminen, Richard Finkers, Richard G. F. Visser, Laxmi Parida
2019 J jnl
Haplotype assembly of autotetraploid potato using integer linear programing.
Bioinform.
Enrico Siragusa, Niina Haiminen, Richard Finkers, Richard G. F. Visser, Laxmi Parida
2019 J jnl
Linear Time Algorithms to Construct Populations Fitting Multiple Constraint Distributions at Genomic Scales.
IEEE ACM Trans. Comput. Biol. Bioinform.
Enrico Siragusa, Niina Haiminen, Filippo Utro, Laxmi Parida
2019 J jnl
Signal enrichment with strain-level resolution in metagenomes using topological data analysis.
BMC Genom.
Aldo Guzmán-Sáenz, Niina Haiminen, Saugata Basu, Laxmi Parida
2016 J jnl
Design of the MCAW compute service for food safety bioinformatics.
IBM J. Res. Dev.
Stefan Edlund, Kristen L. Beck, Niina Haiminen, Laxmi Parida, Brian D. Storey, Bart C. Weimer, James H. Kaufman, David D. Chambliss
2016 — conf
Host Phenotype Prediction from Differentially Abundant Microbes Using RoDEO.
CIBB
Anna Paola Carrieri, Niina Haiminen, Laxmi Parida
2016 — conf
Scalable Algorithms at Genomic Resolution to fit LD Distributions.
BCB
Laxmi Parida, Niina Haiminen
2015 Misc conf
Host Trait Prediction of Metagenomic Data for Topology-Based Visualization.
ICDCIT
Laxmi Parida, Niina Haiminen, David Haws, Jan Suchodolski
2015 J jnl
SimBA: simulation algorithm to fit extant-population distributions.
BMC Bioinform.
Laxmi Parida, Niina Haiminen
2014 C conf
Best-Fit in Linear Time for Non-generative Population Simulation - (Extended Abstract).
WABI
Niina Haiminen, Claude Lebreton, Laxmi Parida
2013 J jnl
Efficient
Algorithms
Niina Haiminen, Filippo Utro, Claude Lebreton, Pascal Flament, Zivan Karaman, Laxmi Parida
2011 J jnl
Randomization techniques for assessing the significance of gene periodicity results.
BMC Bioinform.
Aleksi Kallio, Niko Vuokko, Markus Ojala, Niina Haiminen, Heikki Mannila
2010 J jnl
Evaluation of BIC and Cross Validation for model selection on sequence segmentations.
Int. J. Data Min. Bioinform.
Niina Haiminen, Heikki Mannila
2009 J jnl
Randomization methods for assessing data analysis results on real-valued matrices.
Stat. Anal. Data Min.
Markus Ojala, Niko Vuokko, Aleksi Kallio, Niina Haiminen, Heikki Mannila
2008 J jnl
Algorithms for unimodal segmentation with applications to unimodality detection.
Knowl. Inf. Syst.
Niina Haiminen, Aristides Gionis, Kari Laasonen
2008 J jnl
Determining significance of pairwise co-occurrences of events in bursty sequences.
BMC Bioinform.
Niina Haiminen, Heikki Mannila, Evimaria Terzi
2008 A conf
Randomization of real-valued matrices for assessing the significance of data mining results.
SDM
Markus Ojala, Niko Vuokko, Aleksi Kallio, Niina Haiminen, Heikki Mannila
2007 J jnl
Comparing segmentations by applying randomization techniques.
BMC Bioinform.
Niina Haiminen, Heikki Mannila, Evimaria Terzi
2006 A conf
Segmentation and dimensionality reduction.
SDM
Ella Bingham, Aristides Gionis, Niina Haiminen, Heli Hiisilä, Heikki Mannila, Evimaria Terzi
2004 A* conf
Unimodal Segmentation of Sequences.
ICDM
Niina Haiminen, Aristides Gionis