Nicole T. Perna

13 papers C 1Journal 10Unranked 2
YearRankTypeTitle / Venue / Authors
2013 J jnl
Inferring ancient metabolism using ancestral core metabolic models of enterobacteria.
BMC Syst. Biol.
David J. Baumler, Bing Ma, Jennifer L. Reed, Nicole T. Perna
2011 J jnl
The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes.
Database J. Biol. Databases Curation
John P. Hamilton, Eric C. Neeno-Eckwall, Bishwo N. Adhikari, Nicole T. Perna, Ned Tisserat, Jan Leach, C. André Lévesque, C. Robin Buell
2011 J jnl
The evolution of metabolic networks of E. coli.
BMC Syst. Biol.
David J. Baumler, Roman G. Peplinski, Jennifer L. Reed, Jeremy D. Glasner, Nicole T. Perna
2010 J jnl
chipD: a web tool to design oligonucleotide probes for high-density tiling arrays.
Nucleic Acids Res.
Yann S. Dufour, Gary E. Wesenberg, Andrew J. Tritt, Jeremy D. Glasner, Nicole T. Perna, Julie C. Mitchell, Timothy J. Donohue
2009 J jnl
Reordering contigs of draft genomes using the Mauve Aligner.
Bioinform.
Anna I. Rissman, Bob Mau, Bryan S. Biehl, Aaron E. Darling, Jeremy D. Glasner, Nicole T. Perna
2009 J jnl
Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.
BMC Bioinform.
Sam Zaremba, Mila Ramos-Santacruz, Thomas Hampton, Panna Shetty, Joel Fedorko, Jon Whitmore, John M. Greene, Nicole T. Perna, Jeremy D. Glasner, Guy Plunkett III, Matthew Shaker, David Pot
2008 J jnl
Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria.
Nucleic Acids Res.
Jeremy D. Glasner, Guy Plunkett III, Bradley D. Anderson, David J. Baumler, Bryan S. Biehl, Valerie Burland, Eric L. Cabot, Aaron E. Darling, Bob Mau, Eric C. Neeno-Eckwall, David Pot, Yu Qiu, Anna I. Rissman, Sara Worzella, Sam Zaremba, Joel Fedorko, Thomas Hampton, Paul Liss, Michael Rusch, Matthew Shaker, Lorie Shaull, Panna Shetty, Silpa Thotakura, Jon Whitmore, Frederick R. Blattner, John M. Greene, Nicole T. Perna
2006 J jnl
ASAP: a resource for annotating, curating, comparing, and disseminating genomic data.
Nucleic Acids Res.
Jeremy D. Glasner, Michael Rusch, Paul Liss, Guy Plunkett III, Eric L. Cabot, Aaron E. Darling, Bradley D. Anderson, Paul Infield-Harm, Michael C. Gilson, Nicole T. Perna
2006 C conf
Procrastination Leads to Efficient Filtration for Local Multiple Alignment.
WABI
Aaron E. Darling, Todd J. Treangen, Louxin Zhang, Carla Kuiken, Xavier Messeguer, Nicole T. Perna
2004 J jnl
GRIL: genome rearrangement and inversion locator.
Bioinform.
Aaron E. Darling, Bob Mau, Frederick R. Blattner, Nicole T. Perna
2004 — conf
Identifying Evolutionarily Conserved Segments Among Multiple Divergent and Rearranged Genomes.
Comparative Genomics
Bob Mau, Aaron E. Darling, Nicole T. Perna
2004 — conf
Multiple Alignment of Rearranged Genomes.
CSB
Aaron E. Darling, Bob Mau, Mark Craven, Nicole T. Perna
2003 J jnl
ASAP, a systematic annotation package for community analysis of genomes.
Nucleic Acids Res.
Jeremy D. Glasner, Paul Liss, Guy Plunkett III, Aaron E. Darling, Tejasvini Prasad, Michael Rusch, Alexis Byrnes, Michael K. Gilson, Bryan S. Biehl, Frederick R. Blattner, Nicole T. Perna