Nicole Radde

30 papers C 2Misc 2Journal 22Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Integrated mathematical and experimental modeling uncovers enhanced EMT plasticity upon loss of the DLC1 tumor suppressor.
PLoS Comput. Biol.
Sebastian Höpfl, Merih Özverin, Helena Nowack, Raluca Tamas, Andrew G. Clark, Nicole Radde, Monilola A. Olayioye
2024 J jnl
Bayesian modelling of time series data (BayModTS) - a FAIR workflow to process sparse and highly variable data.
Bioinform.
Sebastian Höpfl, Mohamed Albadry, Uta Dahmen, Karl-Heinz Herrmann, Eva Marie Kindler, Matthias König, Jürgen Rainer Reichenbach, Hans-Michael Tautenhahn, Weiwei Wei, Wan-Ting Zhao, Nicole Radde
2023 J jnl
The impossible challenge of estimating non-existent moments of the Chemical Master Equation.
Bioinform.
Vincent Wagner, Nicole Radde
2022 J jnl
Quasi-Entropy Closure: a fast and reliable approach to close the moment equations of the Chemical Master Equation.
Bioinform.
Vincent Wagner, Benjamin Castellaz, Marco Oesting, Nicole Radde
2017 J jnl
Sampling-based Bayesian approaches reveal the importance of quasi-bistable behavior in cellular decision processes on the example of the MAPK signaling pathway in PC-12 cell lines.
BMC Syst. Biol.
Antje Jensch, Caterina Thomaseth, Nicole Radde
2016 J jnl
MEMO: multi-experiment mixture model analysis of censored data.
Bioinform.
Eva-Maria Geissen, Jan Hasenauer, Stephanie Heinrich, Silke Hauf, Fabian J. Theis, Nicole Radde
2015 J jnl
A computational model of PKD and CERT interactions at the trans-Golgi network of mammalian cells.
BMC Syst. Biol.
Patrick Weber, Mariana Hornjik, Monilola A. Olayioye, Angelika Hausser, Nicole Radde
2014 J jnl
Hamiltonian Monte Carlo methods for efficient parameter estimation in steady state dynamical systems.
BMC Bioinform.
Andrei Kramer, Ben Calderhead, Nicole Radde
2014 J jnl
mcmc_clib-an advanced MCMC sampling package for ode models.
Bioinform.
Andrei Kramer, Vassilios Stathopoulos, Mark A. Girolami, Nicole Radde
2013 J jnl
iVUN: interactive Visualization of Uncertain biochemical reaction Networks.
BMC Bioinform.
Corinna Vehlow, Jan Hasenauer, Andrei Kramer, Andreas Raue, Sabine Hug, Jens Timmer, Nicole Radde, Fabian J. Theis, Daniel Weiskopf
2012 J jnl
Analyzing fixed points of intracellular regulation networks with interrelated feedback topology.
BMC Syst. Biol.
Nicole Radde
2012 J jnl
Trajectory-oriented Bayesian experiment design versus Fisher A-optimal design: an in depth comparison study.
Bioinform.
Patrick Weber, Andrei Kramer, Clemens Dingler, Nicole Radde
2012 — conf
Uncertainty-aware visual analysis of biochemical reaction networks.
BioVis
Corinna Vehlow, Jan Hasenauer, Andrei Kramer, Julian Heinrich, Nicole Radde, Frank Allgöwer, Daniel Weiskopf
2011 J jnl
Identification of models of heterogeneous cell populations from population snapshot data.
BMC Bioinform.
Jan Hasenauer, Steffen Waldherr, Malgorzata Doszczak, Nicole Radde, Peter Scheurich, Frank Allgöwer
2010 Misc conf
A maximum likelihood estimator for parameter distributions in heterogeneous cell populations.
ICCS
Jan Hasenauer, Steffen Waldherr, Nicole Radde, Malgorzata Doszczak, Peter Scheurich, Frank Allgöwer
2010 C conf
Computation of the Posterior Entropy in a Bayesian Framework for Parameter Estimation in Biological Networks.
CCA
Andrei Kramer, Jan Hasenauer, Frank Allgöwer, Nicole Radde
2010 J jnl
Fixed point characterization of biological networks with complex graph topology.
Bioinform.
Nicole Radde
2010 C conf
Generic Bifurcations in the Dynamics of Biochemical Networks.
CCA
Steffen Waldherr, Frank Allgöwer, Nicole Radde
2010 J jnl
Graphical methods for analysing feedback in biological networks - A survey.
Int. J. Syst. Sci.
Nicole Radde, Nadav S. Bar, Murad Banaji
2010 Misc conf
Towards experimental design using a Bayesian framework for parameter identification in dynamic intracellular network models.
ICCS
Andrei Kramer, Nicole Radde
2009 J jnl
Inference of an oscillating model for the yeast cell cycle.
Discret. Appl. Math.
Nicole Radde, Lars Kaderali
2009 J jnl
Long-term prediction of fish growth under varying ambient temperature using a multiscale dynamic model.
BMC Syst. Biol.
Nadav S. Bar, Nicole Radde
2009 J jnl
Modeling and simulation of nitrogen regulation in Corynebacterium glutamicum.
Discret. Appl. Math.
Jutta Gebert, Nicole Radde, Ulrich Faigle, Julia Strösser, Andreas Burkovski
2009 J jnl
The Impact of Time Delays on the Robustness of Biological Oscillators and the Effect of Bifurcations on the Inverse Problem.
EURASIP J. Bioinform. Syst. Biol.
Nicole Radde
2008 — ch.
Inferring Gene Regulatory Networks from Expression Data.
Computational Intelligence in Bioinformatics
Lars Kaderali, Nicole Radde
2008 J jnl
The Effect of Time Scale Differences and Time Delays on the Structural Stability of oscillations in a Two-Gene Network.
Adv. Complex Syst.
Nicole Radde
2007 — conf
Bayesian Inference of Gene Regulatory Networks Using Gene Expression Time Series Data.
BIRD
Nicole Radde, Lars Kaderali
2007 — —
Modeling Non-Linear Dynamic Phenomena in Biochemical Networks
Nicole Radde
2007 J jnl
Modeling gene regulatory networks with piecewise linear differential equations.
Eur. J. Oper. Res.
Jutta Gebert, Nicole Radde, Gerhard-Wilhelm Weber
2006 J jnl
Systematic component selection for gene-network refinement.
Bioinform.
Nicole Radde, Jutta Gebert, Christian V. Forst