Nicolas Wieseke

34 papers C 2Misc 2Journal 27Unranked 2

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Orthology and Near-Cographs in the Context of Phylogenetic Networks. CoRR Anna Lindeberg, Guillaume E. Scholz, Nicolas Wieseke, Marc Hellmuth
2025	J	`jnl`	Orthology and near-cographs in the context of phylogenetic networks. Algorithms Mol. Biol. Anna Lindeberg, Guillaume E. Scholz, Nicolas Wieseke, Marc Hellmuth
2023	J	`jnl`	Relative timing information and orthology in evolutionary scenarios. Algorithms Mol. Biol. David Schaller, Tom Hartmann, Manuel Lafond, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
2022	J	`jnl`	Complete edge-colored permutation graphs. Adv. Appl. Math. Tom Hartmann, Max Bannach, Martin Middendorf, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
2022	J	`jnl`	Relative Timing Information and Orthology in Evolutionary Scenarios. CoRR David Schaller, Tom Hartmann, Manuel Lafond, Nicolas Wieseke, Marc Hellmuth, Peter F. Stadler
2020	J	`jnl`	Cograph editing: Merging modules is equivalent to editing P_4s. Art Discret. Appl. Math. Adrian Fritz, Marc Hellmuth, Peter F. Stadler, Nicolas Wieseke
2020	J	`jnl`	Complete Edge-Colored Permutation Graphs. CoRR Tom Hartmann, Max Bannach, Martin Middendorf, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
2020	J	`jnl`	Indirect Identification of Horizontal Gene Transfer. CoRR David Schaller, Manuel Lafond, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
2018	J	`jnl`	Genome Rearrangement with ILP. IEEE ACM Trans. Comput. Biol. Bioinform. Tom Hartmann, Nicolas Wieseke, Roded Sharan, Martin Middendorf, Matthias Bernt
2018	J	`jnl`	On tree representations of relations and graphs: symbolic ultrametrics and cograph edge decompositions. J. Comb. Optim. Marc Hellmuth, Nicolas Wieseke
2018	Misc	`conf`	Partial Homology Relations - Satisfiability in Terms of Di-Cographs. COCOON Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth
2018	J	`jnl`	Time-consistent reconciliation maps and forbidden time travel. Algorithms Mol. Biol. Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
2017	C	`conf`	Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps. WABI Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
2017	J	`jnl`	Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps. CoRR Nikolai Nøjgaard, Manuela Geiß, Peter F. Stadler, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth
2017	—	`—`	From Homologous Genes to Phylogenetic Species Trees: On Tree Representations of Binary Relations Nicolas Wieseke
2017	J	`jnl`	From event labeled gene trees to species trees. CoRR Maribel Hernandez-Rosales, Marc Hellmuth, Nicolas Wieseke, Katharina T. Huber, Vincent Moulton, Peter F. Stadler
2017	J	`jnl`	Merging Modules is equivalent to Editing P4's. CoRR Marc Hellmuth, Adrian Fritz, Nicolas Wieseke, Peter F. Stadler
2017	J	`jnl`	Partial Orthology, Paralogy and Xenology Relations - Satisfiability in terms of Di-Cographs. CoRR Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth
2017	J	`jnl`	Phylogenomics with Paralogs. CoRR Marc Hellmuth, Nicolas Wieseke, Marcus Lechner, Hans-Peter Lenhof, Martin Middendorf, Peter F. Stadler
2017	J	`jnl`	Reconstructing Gene Trees From Fitch's Xenology Relation. CoRR Manuela Geiß, John Anders, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
2016	J	`jnl`	Construction of Gene and Species Trees from Sequence Data incl. Orthologs, Paralogs, and Xenologs. CoRR Marc Hellmuth, Nicolas Wieseke
2016	J	`jnl`	The Mathematics of Xenology: Di-cographs, Symbolic Ultrametrics, 2-structures and Tree-representable Systems of Binary Relations. CoRR Marc Hellmuth, Peter F. Stadler, Nicolas Wieseke
2016	J	`jnl`	The paralog-to-contig assignment problem: high quality gene models from fragmented assemblies. Algorithms Mol. Biol. Henrike Indrischek, Nicolas Wieseke, Peter F. Stadler, Sonja J. Prohaska
2015	J	`jnl`	Cophylogenetic Reconciliation with ILP. IEEE ACM Trans. Comput. Biol. Bioinform. Nicolas Wieseke, Tom Hartmann, Matthias Bernt, Martin Middendorf
2015	Misc	`conf`	On Symbolic Ultrametrics, Cotree Representations, and Cograph Edge Decompositions and Partitions. COCOON Marc Hellmuth, Nicolas Wieseke
2015	J	`jnl`	On Symbolic Ultrametrics, Cotree Representations, and Cograph Edge Decompositions and Partitions. CoRR Marc Hellmuth, Nicolas Wieseke
2015	J	`jnl`	On Tree Representations of Relations and Graphs: Symbolic Ultrametrics and Cograph Edge Decompositions. CoRR Marc Hellmuth, Nicolas Wieseke
2015	J	`jnl`	Techniques for the Cograph Editing Problem: Module Merge is equivalent to Editing P4s. CoRR Marc Hellmuth, Adrian Fritz, Nicolas Wieseke, Peter F. Stadler
2014	J	`jnl`	Simulation of gene family histories. BMC Bioinform. Maribel Hernandez-Rosales, Nicolas Wieseke, Marc Hellmuth, Peter F. Stadler
2013	—	`conf`	On Weighting Schemes for Gene Order Analysis. GCB Matthias Bernt, Nicolas Wieseke, Martin Middendorf
2013	—	`conf`	POMAGO: Multiple Genome-Wide Alignment Tool for Bacteria. ISBRA Nicolas Wieseke, Marcus Lechner, Marcus Ludwig, Manja Marz
2013	C	`conf`	Unifying Parsimonious Tree Reconciliation. WABI Nicolas Wieseke, Matthias Bernt, Martin Middendorf
2012	J	`jnl`	From event-labeled gene trees to species trees. BMC Bioinform. Maribel Hernandez-Rosales, Marc Hellmuth, Nicolas Wieseke, Katharina T. Huber, Vincent Moulton, Peter F. Stadler
2010	J	`jnl`	A parameter-adaptive dynamic programming approach for inferring cophylogenies. BMC Bioinform. Daniel Merkle, Martin Middendorf, Nicolas Wieseke