Nicolas Garcelon

33 papers Misc 1Journal 13Unranked 18

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Active learning for extracting rare adverse events from electronic health records: A study in pediatric cardiology. Int. J. Medical Informatics Sophie Quennelle, Sophie Malekzadeh-Milani, Nicolas Garcelon, Hassan Faour, Anita Burgun, Carole Faviez, Rosy Tsopra, Damien Bonnet, Antoine Neuraz
2025	J	`jnl`	Comparing representations of long clinical texts for the task of patient note-identification. CoRR Safa Alsaidi, Marc Vincent, Olivia Boyer, Nicolas Garcelon, Miguel Couceiro, Adrien Coulet
2025	J	`jnl`	Enhancing rare disease detection with deep phenotyping from EHR narratives: evaluation on Jeune syndrome. Int. J. Medical Informatics Carole Faviez, Xiaomeng Wang, Marc Vincent, Nicolas Garcelon, Sophie Saunier, Valerie Cormier-Daire, Xiaoyi Chen, Anita Burgun
2024	—	`conf`	An Integrated Pipeline for Phenotypic Characterization, Clustering and Visualization of Patient Cohorts in a Rare Disease-Oriented Clinical Data Warehouse. MIE Xiaoyi Chen, Junyuan Wang, Carole Faviez, Xiaomeng Wang, Marc Vincent, Rosy Tsopra, Anita Burgun, Nicolas Garcelon
2024	J	`jnl`	Facilitating phenotyping from clinical texts: the medkit library. Bioinform. Antoine Neuraz, Ghislain Vaillant, Camila Arias, Olivier Birot, Kim Tâm Huynh, Thibaut Fabacher, Alice Rogier, Nicolas Garcelon, Ivan Lerner, Bastien Rance, Adrien Coulet
2024	J	`jnl`	Facilitating phenotyping from clinical texts: the medkit library. CoRR Antoine Neuraz, Ghislain Vaillant, Camila Arias, Olivier Birot, Kim Tâm Huynh, Thibaut Fabacher, Alice Rogier, Nicolas Garcelon, Ivan Lerner, Bastien Rance, Adrien Coulet
2024	J	`jnl`	Objectivizing issues in the diagnosis of complex rare diseases: lessons learned from testing existing diagnosis support systems on ciliopathies. BMC Medical Informatics Decis. Mak. Carole Faviez, Xiaoyi Chen, Nicolas Garcelon, Mohamad Zaidan, Katy Billot, Friederike Petzold, Hassan Faour, Maxime Douillet, Jean-Michel Rozet, Valerie Cormier-Daire, Tania Attié-Bitach, Stanislas Lyonnet, Sophie Saunier, Anita Burgun
2023	—	`conf`	Improving Patient Similarity Using Different Modalities of Phenotypes Extracted from Clinical Narratives. MIE Xiaoyi Chen, Carole Faviez, Marc Vincent, Sophie Saunier, Nicolas Garcelon, Anita Burgun
2023	—	`conf`	The Smart Data Extractor, a Clinician Friendly Solution to Accelerate and Improve the Data Collection During Clinical Trials. MIE Sophie Quennelle, Maxime Douillet, Lisa Friedlander, Olivia Boyer, Antoine Neuraz, Anita Burgun, Nicolas Garcelon
2023	J	`jnl`	The Smart Data Extractor, a Clinician Friendly Solution to Accelerate and Improve the Data Collection During Clinical Trials. CoRR Sophie Quennelle, Maxime Douillet, Lisa Friedlander, Olivia Boyer, Anita Burgun, Antoine Neuraz, Nicolas Garcelon
2022	—	`conf`	An analogy based framework for patient-stay identification in healthcare. ICCBR Workshops Safa Alsaidi, Miguel Couceiro, Esteban Marquer, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet
2022	—	`conf`	Enriching UMLS-Based Phenotyping of Rare Diseases Using Deep-Learning: Evaluation on Jeune Syndrome. MIE Carole Faviez, Marc Vincent, Nicolas Garcelon, Caroline Michot, Geneviève Baujat, Valerie Cormier-Daire, Sophie Saunier, Xiaoyi Chen, Anita Burgun
2022	—	`conf`	Exploring Analogical Inference in Healthcare. IARML@IJCAI Safa Alsaidi, Miguel Couceiro, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet
2021	—	`conf`	A Multi-Omics Common Data Model for Primary Immunodeficiencies. MedInfo Mélanie Buy, William Digan, Xiaoyi Chen, Julien Husson, Mickael Ménager, Frédéric Rieux-Laucat, Nicolas Garcelon
2021	—	`conf`	Identification of Similar Patients Through Medical Concept Embedding from Electronic Health Records: A Feasibility Study for Rare Disease Diagnosis. MIE Xiaoyi Chen, Carole Faviez, Marc Vincent, Nicolas Garcelon, Sophie Saunier, Anita Burgun
2021	—	`conf`	Using Deep Learning to Improve Phenotyping from Clinical Reports. MedInfo Marc Vincent, Maxime Douillet, Ivan Lerner, Antoine Neuraz, Anita Burgun, Nicolas Garcelon
2020	—	`conf`	The Impact of Specialized Corpora for Word Embeddings in Natural Langage Understanding. MIE Antoine Neuraz, Bastien Rance, Nicolas Garcelon, Leonardo Campillos-Llanos, Anita Burgun, Sophie Rosset
2019	—	`conf`	Do You Need Embeddings Trained on a Massive Specialized Corpus for Your Clinical Natural Language Processing Task? MedInfo Antoine Neuraz, Vincent Looten, Bastien Rance, Nicolas Daniel, Nicolas Garcelon, Leonardo Campillos-Llanos, Anita Burgun, Sophie Rosset
2019	J	`jnl`	Phenotypic similarity for rare disease: Ciliopathy diagnoses and subtyping. J. Biomed. Informatics Xiaoyi Chen, Nicolas Garcelon, Antoine Neuraz, Katy Billot, Marc Lelarge, Thomas Bonald, Hugo Garcia, Yoann Martin, Vincent Benoit, Marc Vincent, Hassan Faour, Maxime Douillet, Stanislas Lyonnet, Sophie Saunier, Anita Burgun
2018	J	`jnl`	A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse. J. Biomed. Informatics Nicolas Garcelon, Antoine Neuraz, Rémi Salomon, Hassan Faour, Vincent Benoit, Arthur Delapalme, Arnold Munnich, Anita Burgun, Bastien Rance
2017	J	`jnl`	Finding patients using similarity measures in a rare diseases-oriented clinical data warehouse: Dr. Warehouse and the needle in the needle stack. J. Biomed. Informatics Nicolas Garcelon, Antoine Neuraz, Vincent Benoit, Rémi Salomon, Sven Kracker, Felipe Suarez, Nadia Bahi-Buisson, Smail Hadj-Rabia, Alain Fischer, Arnold Munnich, Anita Burgun
2017	J	`jnl`	Improving a full-text search engine: the importance of negation detection and family history context to identify cases in a biomedical data warehouse. J. Am. Medical Informatics Assoc. Nicolas Garcelon, Antoine Neuraz, Vincent Benoit, Rémi Salomon, Anita Burgun
2017	—	`—`	Problématique des entrepôts de données textuelles: dr Warehouse et la recherche translationnelle sur les maladies rares. (Textual data Warehouse challenge: Dr. Warehouse and translational research on rare diseases). Nicolas Garcelon
2014	—	`conf`	Enrichissement sémantique associé à la détection de la négation et des antécédents familiaux dans un entrepôt de données hospitalier. JFIM Nicolas Garcelon, Rémi Salomon, Anita Burgun
2013	—	`conf`	Full-text Automated Detection of Surgical Site Infections Secondary to Neurosurgery in Rennes, France. MedInfo Boris Campillo-Gimenez, Nicolas Garcelon, Pascal Jarno, Jean Marc Chapplain, Marc Cuggia
2012	—	`conf`	RAVEL: Retrieval And Visualization in ELectronic health records. MIE Frantz Thiessard, Fleur Mougin, Gayo Diallo, Vianney Jouhet, Sébastien Cossin, Nicolas Garcelon, Boris Campillo-Gimenez, Wassim Jouini, Julien Grosjean, Philippe Massari, Nicolas Griffon, Marie Dupuch, Fayssal Tayalati, Edwige Dugas, Antonio Balvet, Natalia Grabar, Suzanne Pereira, Bruno Frandji, Stéfan Jacques Darmoni, Marc Cuggia
2012	Misc	`conf`	Towards complex queries on data from complex patients. AMIA Gayo Diallo, Natalia Grabar, Frantz Thiessard, Nicolas Garcelon, Julien Grosjean, Marie Dupuch, Suzanne Bento-Pereira, Bruno Frandji, Stéfan Jacques Darmoni, Marc Cuggia
2011	—	`conf`	Roogle: An Information Retrieval Engine for Clinical Data Warehouse. MIE Marc Cuggia, Nicolas Garcelon, Boris Campillo-Gimenez, Thomas Bernicot, Jean-François Laurent, Etienne Garin, André Happe, Régis Duvauferrier
2010	—	`conf`	A full-text information retrieval system for an epidemiological registry. MedInfo Marc Cuggia, Sahar Bayat, Nicolas Garcelon, Lauren Sanders, Florence Rouget, Arnaud Coursin, Patrick Pladys
2007	J	`jnl`	An Internet supported workflow for the publication process in UMVF (French Virtual Medical University). Int. J. Medical Informatics Jean-Marie Renard, Annabel Bourde, Marc Cuggia, Nicolas Garcelon, Nathalie Souf, Stéfan Jacques Darmoni, Régis Beuscart, Jean-Marc Brunetaud
2007	J	`jnl`	Doc'UMVF: Two search tools to provide quality-controlled teaching resources in French to students and teachers. Int. J. Medical Informatics Marc Cuggia, Stéfan Jacques Darmoni, Nicolas Garcelon, Lina Fatima Soualmia, Annabel Bourde
2006	—	`conf`	Evidence in pharmacovigilance: extracting Adverse Drug Reactions articles from MEDLINE to link them to case databases. MIE Nicolas Garcelon, Fleur Mougin, Cédric Bousquet, Anita Burgun
2004	—	`conf`	Experiments in cross-language medical information retrieval using a mixing translation module. MedInfo Tuan Due Tran, Nicolas Garcelon, Anita Burgun, Pierre Le Beux