Nico Scherf - RankMe

45 papers A* 1B 3Journal 27Unranked 13

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	AUTOENCODIX: a generalized and versatile framework to train and evaluate autoencoders for biological representation learning and beyond. Nat. Comput. Sci. Maximilian Josef Joas, Neringa Jurenaite, Dusan Prascevic, Nico Scherf, Jan Ewald
2026	J	`jnl`	Grid-World Representations in Transformers Reflect Predictive Geometry. CoRR Sasha Brenner, Thomas R. Knösche, Nico Scherf
2026	J	`jnl`	Relative Geometry of Neural Forecasters: Linking Accuracy and Alignment in Learned Latent Geometry. CoRR Deniz Küçükahmetler, Maximilian Jean Hemmann, Julian Mosig von Aehrenfeld, Maximilian Amthor, Christian Deubel, Nico Scherf, Diaaeldin Taha
2026	J	`jnl`	Relative Geometry of Neural Forecasters: Linking Accuracy and Alignment in Learned Latent Geometry. Trans. Mach. Learn. Res. Deniz Küçükahmetler, Maximilian Jean Hemmann, Julian Mosig von Aehrenfeld, Maximilian Amthor, Christian Deubel, Nico Scherf, Diaaeldin Taha
2026	J	`jnl`	Stochastic Decision Horizons for Constrained Reinforcement Learning. CoRR Nikola Milosevic, Leonard Franz, Daniel Häufle, Georg Martius, Nico Scherf, Pavel Kolev
2026	—	`conf`	Visual Bias in Simulated Users: The Impact of Luminance and Contrast on Reinforcement Learning-based Interaction. CHI Extended Abstracts Hannah Selder, Charlotte Beylier, Nico Scherf, Arthur Fleig
2026	J	`jnl`	Visual Bias in Simulated Users: The Impact of Luminance and Contrast on Reinforcement Learning-based Interaction. CoRR Hannah Selder, Charlotte Beylier, Nico Scherf, Arthur Fleig
2026	J	`jnl`	Visualizing the multidimensional landscape of biological variation in modern microscopy. Frontiers Bioinform. Gesine Müller, Torben Göpel, Nico Scherf, Jan Huisken
2025	J	`jnl`	Attention Trajectories as a Diagnostic Axis for Deep Reinforcement Learning. CoRR Charlotte Beylier, Hannah Selder, Arthur Fleig, Simon M. Hofmann, Nico Scherf
2025	J	`jnl`	Central Path Proximal Policy Optimization. CoRR Nikola Milosevic, Johannes Müller, Nico Scherf
2025	—	`conf`	Correcting the Modified Stochastic Synaptic Model of Synaptic Dynamics Refinement of Vesicle and Neurotransmitters Functions. ICANN (1) Ferney Beltran-Velandia, Nico Scherf, Martin Bogdan
2025	A*	`conf`	Embedding Safety into RL: A New Take on Trust Region Methods. ICML Nikola Milosevic, Johannes Müller, Nico Scherf
2025	J	`jnl`	Exploring Geometric Representational Alignment through Ollivier-Ricci Curvature and Ricci Flow. CoRR Nahid Torbati, Michael Gaebler, Simon M. Hofmann, Nico Scherf
2025	J	`jnl`	Multimodal Recurrent Ensembles for Predicting Brain Responses to Naturalistic Movies (Algonauts 2025). CoRR Semih Eren, Deniz Küçükahmetler, Nico Scherf
2025	J	`jnl`	Physical Embodiment Enables Information Processing Beyond Explicit Sensing in Active Matter. CoRR Diptabrata Paul, Nikola Milosevic, Nico Scherf, Frank Cichos
2025	J	`jnl`	Predicting Microbial Interactions Using Graph Neural Networks. CoRR Elham Gholamzadeh, Kajal Singla, Nico Scherf
2025	J	`jnl`	The Geometry of Nonlinear Reinforcement Learning. CoRR Nikola Milosevic, Nico Scherf
2024	J	`jnl`	Embedding Safety into RL: A New Take on Trust Region Methods. CoRR Nikola Milosevic, Johannes Müller, Nico Scherf
2024	J	`jnl`	Fair Distributed Machine Learning with Imbalanced Data as a Stackelberg Evolutionary Game. CoRR Sebastian Niehaus, Ingo Roeder, Nico Scherf
2024	J	`jnl`	Open Problem: Active Representation Learning. CoRR Nikola Milosevic, Gesine Müller, Jan Huisken, Nico Scherf
2024	J	`jnl`	Revealing the learning process in reinforcement learning agents through attention-oriented metrics. CoRR Charlotte Beylier, Simon M. Hofmann, Nico Scherf
2021	J	`jnl`	Quality control for more reliable integration of deep learning-based image segmentation into medical workflows. CoRR Elena Williams, Sebastian Niehaus, Janis Reinelt, Alberto Merola, Paul Glad Mihai, Ingo Roeder, Nico Scherf, Maria del C. Valdés Hernández
2021	J	`jnl`	linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser. PLoS Comput. Biol. Johannes Waschke, Mario Hlawitschka, Kerim Anlas, Vikas Trivedi, Ingo Roeder, Jan Huisken, Nico Scherf
2020	J	`jnl`	A comparative study of semi- and self-supervised semantic segmentation of biomedical microscopy data. CoRR Nastassya Horlava, Alisa Mironenko, Sebastian Niehaus, Sebastian Wagner, Ingo Roeder, Nico Scherf
2020	B	`conf`	On the Formal Representation and Annotation of Cellular Genealogies. EKAW Patryk Burek, Nico Scherf, Heinrich Herre
2020	—	`conf`	On the Ontological Foundations of Cellular Development. JOWO Patryk Burek, Heinrich Herre, Nico Scherf
2019	B	`conf`	A pattern-based approach to a cell tracking ontology. KES Patryk Burek, Nico Scherf, Heinrich Herre
2019	J	`jnl`	Convolutional neural network stacking for medical image segmentation in CT scans. CoRR Marie Kloenne, Sebastian Niehaus, Leonie Lampe, Alberto Merola, Janis Reinelt, Nico Scherf
2019	—	`conf`	Foundations of the Cell Tracking Ontology. JOWO Patryk Burek, Nico Scherf, Heinrich Herre
2019	J	`jnl`	Ontology patterns for the representation of quality changes of cells in time. J. Biomed. Semant. Patryk Burek, Nico Scherf, Heinrich Herre
2018	—	`conf`	Combining Deep Learning and Active Contours Opens The Way to Robust, Automated Analysis of Brain Cytoarchitectonics. MLMI@MICCAI Konstantin Thierbach, Pierre-Louis Bazin, Walter de Back, Filippos Gavriilidis, Evgeniya Kirilina, Carsten Jäger, Markus Morawski, Stefan Geyer, Nikolaus Weiskopf, Nico Scherf
2018	J	`jnl`	Developing 3D microscopy with CLARITY on human brain tissue: Towards a tool for informing and validating MRI-based histology. NeuroImage Markus Morawski, Evgeniya Kirilina, Nico Scherf, Carsten Jäger, Katja Reimann, Robert Trampel, Filippos Gavriilidis, Stefan Geyer, Bernd Biedermann, Thomas Arendt, Nikolaus Weiskopf
2017	J	`jnl`	Spatiotemporal Deformable Prototypes for Motion Anomaly Detection. Int. J. Comput. Vis. Robert Bensch, Nico Scherf, Jan Huisken, Thomas Brox, Olaf Ronneberger
2016	—	`conf`	Biology-inspired visualization of morphogenetic motion in the zebrafish endoderm. ISBI Konstantin Thierbach, Gopi Shah, Ingmar Glauche, Jan Huisken, Ingo Roeder, Nico Scherf
2015	J	`jnl`	Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions. Bioinform. Theresa Niederberger, Henrik Failmezger, Diana Uskat, Don Poron, Ingmar Glauche, Nico Scherf, Ingo Roeder, Timm Schroeder, Achim Tresch
2014	—	`conf`	The benchmark data SET CeTReS.B-MI for in vitro mitosis detection. ISBI Tim Becker, W. Kanje, Daniel H. Rapoport, Konstantin Thierbach, Nico Scherf, Ingo Roeder, Amir Madany Mamlouk
2013	—	`conf`	Assisting the Machine Paradigms for Human-Machine Interaction in Single Cell Tracking. Bildverarbeitung für die Medizin Nico Scherf, Michael Kunze, Konstantin Thierbach, Thomas Zerjatke, Patryk Burek, Heinrich Herre, Ingmar Glauche, Ingo Roeder
2013	—	`conf`	Beyond genealogies: Mutual information of causal paths to analyse single cell tracking data. ISBI Nico Scherf, Thomas Zerjatke, K. Klemm, Ingmar Glauche, Ingo Roeder
2013	—	`—`	Panta Rhei: analysing the patterns of cellular organisation from time-lapse microscopy data. Nico Scherf
2012	—	`conf`	FluidTracks - Combining Nonlinear Image Registration and Active Contours for Cell Tracking. Bildverarbeitung für die Medizin Nico Scherf, Christian Ludborzs, Konstantin Thierbach, Jens-Peer Kuska, Ulf-Dietrich Braumann, Patrick Scheibe, Tilo Pompe, Ingmar Glauche, Ingo Roeder
2012	J	`jnl`	Imaging, quantification and visualization of spatio-temporal patterning in mESC colonies under different culture conditions. Bioinform. Nico Scherf, Maria Herberg, Konstantin Thierbach, Thomas Zerjatke, Tuzer Kalkan, Peter Humphreys, Austin Smith, Ingmar Glauche, Ingo Roeder
2009	—	`conf`	Spatio-temporal Analysis of Unstained Cells In-vitro. Bildverarbeitung für die Medizin Nico Scherf, Jens-Peer Kuska, Ulf-Dietrich Braumann, Katja Franke, Tilo Pompe, Ingo Röder
2008	—	`conf`	Segmentation of Axonal Fibres in Tissue Slices. Bildverarbeitung für die Medizin Nico Scherf, Jens-Peer Kuska, Claudia Heine, Ulf-Dietrich Braumann, Heike Franke
2006	B	`conf`	Image Registration of Differently Stained Histological Sections. ICIP Jens-Peer Kuska, Ulf-Dietrich Braumann, Nico Scherf, Markus Löffler, Jens Einenkel, Michael Höckel, Lars-Christian Horn, Nicolas Wentzensen, Magnus von Knebel Doeberitz
2006	—	`conf`	Registration of Histologic Colour Images of Different Staining. Bildverarbeitung für die Medizin Ulf-Dietrich Braumann, Jens Einenkel, Lars-Christian Horn, Jens-Peer Kuska, Markus Löffler, Nico Scherf, Nicolas Wentzensen