Nick Goldman

19 papers B 1Journal 16Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
SWAMPy: simulating SARS-CoV-2 wastewater amplicon metagenomes.
Bioinform.
William R. Boulton, Fatma Rabia Fidan, Hubert Denise, Nicola De Maio, Nick Goldman
2022 J jnl
phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets.
PLoS Comput. Biol.
Nicola De Maio, William R. Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett-Detig, Nick Goldman
2021 J jnl
A phylogenetic approach for weighting genetic sequences.
BMC Bioinform.
Nicola De Maio, Alexander V. Alekseyenko, William J. Coleman-Smith, Fabio Pardi, Marc A. Suchard, Asif U. Tamuri, Jakub Truszkowski, Nick Goldman
2021 J jnl
Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk.
PLoS Comput. Biol.
Antanas Kalkauskas, Umberto Perron, Yuxuan Sun, Nick Goldman, Guy Baele, Stéphane Guindon, Nicola De Maio
2015 — conf
Music of the Spheres.
EVA
Charlotte Jarvis, Nick Goldman
2014 J jnl
Phylogenetic Quantification of Intra-tumour Heterogeneity.
PLoS Comput. Biol.
Roland F. Schwarz, Anne Trinh, Botond Sipos, James D. Brenton, Nick Goldman, Florian Markowetz
2013 J jnl
Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset.
PLoS Comput. Biol.
Tjaart A. P. de Beer, Roman A. Laskowski, Sarah L. Parks, Botond Sipos, Nick Goldman, Janet M. Thornton
2013 J jnl
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA.
Nat.
Nick Goldman, Paul Bertone, Siyuan Chen, Christophe Dessimoz, Emily M. LeProust, Botond Sipos, Ewan Birney
2012 J jnl
Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm.
Bioinform.
Ari Löytynoja, Albert J. Vilella, Nick Goldman
2012 J jnl
Error-correcting properties of the SOLiD Exact Call Chemistry.
BMC Bioinform.
Tim Massingham, Nick Goldman
2011 J jnl
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment.
BMC Bioinform.
Botond Sipos, Tim Massingham, Gregory E. Jordan, Nick Goldman
2010 B conf
Genomic DNA
RECOMB
Benny Chor, David Horn, Nick Goldman, Yaron Levy, Tim Massingham
2010 J jnl
webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser.
BMC Bioinform.
Ari Löytynoja, Nick Goldman
2008 J jnl
Determination and validation of principal gene products.
Bioinform.
Michael L. Tress, Jan-Jaap Wesselink, Adam Frankish, Gonzalo López, Nick Goldman, Ari Löytynoja, Tim Massingham, Fabio Pardi, Simon Whelan, Jennifer L. Harrow, Alfonso Valencia
2006 J jnl
PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees.
Nucleic Acids Res.
Simon Whelan, Paul I. W. de Bakker, Emmanuel Quevillon, Nicolas Rodriguez, Nick Goldman
2006 J jnl
XRate: a fast prototyping, training and annotation tool for phylo-grammars.
BMC Bioinform.
Peter S. Klosterman, Andrew V. Uzilov, Yuri R. Bendaña, Robert K. Bradley, Sharon Chao, Carolin Kosiol, Nick Goldman, Ian H. Holmes
2003 J jnl
Pandit: a database of protein and associated nucleotide domains with inferred trees.
Bioinform.
Simon Whelan, Paul I. W. de Bakker, Nick Goldman
2000 J jnl
EDIBLE: experimental design and information calculations in phylogenetics.
Bioinform.
Tim Massingham, Nick Goldman
1996 — conf
The Performance of Transversion Based Distance Estimates.
German Conference on Bioinformatics
Michael Schöniger, Nick Goldman