Nicholson T. Collier

45 papers B 1Misc 12Journal 19Unranked 13

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A Portfolio Approach to Massively Parallel Bayesian Optimization. J. Artif. Intell. Res. Mickaël Binois, Nicholson T. Collier, Jonathan Ozik
2025	J	`jnl`	AERO: An autonomous platform for continuous research. CoRR Valérie Hayot-Sasson, Abby Stevens, Nicholson T. Collier, Sudershan Sridhar, Kyle Conroy, J. Gregory Pauloski, Yadu N. Babuji, Maxime Gonthier, Nathaniel Hudson, Dante D. Sánchez-Gallegos, Ian T. Foster, Jonathan Ozik, Kyle Chard
2025	J	`jnl`	Advancing calibration for stochastic agent-based models in epidemiology with Stein variational inference and Gaussian process surrogates. CoRR Connor Robertson, Cosmin Safta, Nicholson T. Collier, Jonathan Ozik, Jaideep Ray
2025	—	`conf`	Automation and Collaboration in Complex Epidemiological Workflows with OSPREY. ICPP Workshops Jonathan Ozik, Nicholson T. Collier, Arindam Fadikar, Justin M. Wozniak, Valérie Hayot-Sasson, Kyle Conroy, Kyle Chard, Jacqueline Wentz, Erin Acquesta, Jaideep Ray
2024	J	`jnl`	Bayesian calibration of stochastic agent based model via random forest. CoRR Connor Robertson, Cosmin Safta, Nicholson T. Collier, Jonathan Ozik, Jaideep Ray
2024	Misc	`conf`	Distributed Model Exploration with EMEWS. WSC Nicholson T. Collier, Justin M. Wozniak, Arindam Fadikar, Abby Stevens, Jonathan Ozik
2024	J	`jnl`	Spatial inequities in access to medications for treatment of opioid use disorder highlight scarcity of methadone providers under counterfactual scenarios. PLoS Comput. Biol. Eric Tatara, Qinyun Lin, Jonathan Ozik, Marynia Kolak, Nicholson T. Collier, Dylan Halpern, Luc Anselin, Harel Dahari, Basmattee Boodram, John A. Schneider
2024	—	`conf`	Towards Improved Uncertainty Quantification of Stochastic Epidemic Models Using Sequential Monte Carlo. IPDPS (Workshops) Arindam Fadikar, Abby Stevens, Nicholson T. Collier, Kok Ben Toh, Olga Morozova, Anna Hotton, Jared Clark, David Higdon, Jonathan Ozik
2023	—	`conf`	Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis. IPDPS Workshops Nicholson T. Collier, Justin M. Wozniak, Abby Stevens, Yadu N. Babuji, Mickaël Binois, Arindam Fadikar, Alexandra Würth, Kyle Chard, Jonathan Ozik
2023	J	`jnl`	Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis. CoRR Nicholson T. Collier, Justin M. Wozniak, Abby Stevens, Yadu N. Babuji, Mickaël Binois, Arindam Fadikar, Alexandra Würth, Kyle Chard, Jonathan Ozik
2023	J	`jnl`	Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics. PLoS Comput. Biol. Atesmachew Hailegiorgis, Yuji Ishida, Nicholson T. Collier, Michio Imamura, Zhenzhen Shi, Vladimir Reinharz, Masataka Tsuge, Danny Barash, Nobuhiko Hiraga, Hiroshi Yokomichi, Chise Tateno, Jonathan Ozik, Susan L. Uprichard, Kazuaki Chayama, Harel Dahari
2023	B	`conf`	PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs. e-Science Mihael Hategan-Marandiuc, André Merzky, Nicholson T. Collier, Ketan Maheshwari, Jonathan Ozik, Matteo Turilli, Andreas Wilke, Justin M. Wozniak, Kyle Chard, Ian T. Foster, Rafael Ferreira da Silva, Shantenu Jha, Daniel E. Laney
2023	J	`jnl`	PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs. CoRR Mihael Hategan-Marandiuc, André Merzky, Nicholson T. Collier, Ketan Maheshwari, Jonathan Ozik, Matteo Turilli, Andreas Wilke, Justin M. Wozniak, Kyle Chard, Ian T. Foster, Rafael Ferreira da Silva, Shantenu Jha, Daniel E. Laney
2023	Misc	`conf`	Trajectory-Oriented Optimization of Stochastic Epidemiological Models. WSC Arindam Fadikar, Nicholson T. Collier, Abby Stevens, Jonathan Ozik, Mickaël Binois, Kok Ben Toh
2022	Misc	`conf`	Distributed Agent-Based Simulation with Repast4Py. WSC Nicholson T. Collier, Jonathan Ozik
2022	J	`jnl`	Sequentially calibrating a Bayesian microsimulation model to incorporate new information and assumptions. BMC Medical Informatics Decis. Mak. Maria DeYoreo, Carolyn M. Rutter, Jonathan Ozik, Nicholson T. Collier
2021	J	`jnl`	A population data-driven workflow for COVID-19 modeling and learning. Int. J. High Perform. Comput. Appl. Jonathan Ozik, Justin M. Wozniak, Nicholson T. Collier, Charles M. Macal, Mickaël Binois
2021	—	`conf`	Application of Distributed Agent-based Modeling to Investigate Opioid Use Outcomes in Justice Involved Populations. IPDPS Workshops Eric Tatara, John A. Schneider, Madeline Quasebarth, Nicholson T. Collier, Harold Pollack, Basmattee Boodram, Samuel H. Friedman, Elizabeth Salisbury-Afshar, Mary Ellen Mackesy-Amiti, Jonathan Ozik
2021	J	`jnl`	Building and experimenting with an agent-based model to study the population-level impact of CommunityRx, a clinic-based community resource referral intervention. PLoS Comput. Biol. Stacy Tessler Lindau, Jennifer A. Makelarski, Chaitanya Kaligotla, Emily Abramsohn, David G. Beiser, Chiahung Chou, Nicholson T. Collier, Elbert S. Huang, Charles M. Macal, Jonathan Ozik, Elizabeth L. Tung
2021	—	`conf`	Load Balancing Schemes for Large Synthetic Population-Based Complex Simulators. IPDPS Workshops Bogdan Mucenic, Chaitanya Kaligotla, Abby Stevens, Jonathan Ozik, Nicholson T. Collier, Charles M. Macal
2020	—	`conf`	Experiences in Developing a Distributed Agent-based Modeling Toolkit with Python. PyHPC@SC Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara
2020	—	`conf`	High-bypass Learning: Automated Detection of Tumor Cells That Significantly Impact Drug Response. MLHPC/AI4S@SC Justin M. Wozniak, Hyun Seung Yoo, Jamaludin Mohd-Yusof, Bogdan Nicolae, Nicholson T. Collier, Jonathan Ozik, Thomas S. Brettin, Rick Stevens
2020	J	`jnl`	Model Exploration of an Information-Based Healthcare Intervention Using Parallelization and Active Learning. J. Artif. Soc. Soc. Simul. Chaitanya Kaligotla, Jonathan Ozik, Nicholson T. Collier, Charles M. Macal, Kelly Boyd, Jennifer A. Makelarski, Elbert S. Huang, Stacy T. Lindau
2019	Misc	`conf`	Multi-Objective Model Exploration of Hepatitis C Elimination in an Agent-Based Model of People who Inject Drugs. WSC Eric Tatara, Nicholson T. Collier, Jonathan Ozik, Alexander Gutfraind, Scott J. Cotler, Harel Dahari, Marian Major, Basmattee Boodram
2018	J	`jnl`	CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research. BMC Bioinform. Justin M. Wozniak, Rajeev Jain, Prasanna Balaprakash, Jonathan Ozik, Nicholson T. Collier, John Bauer, Fangfang Xia, Thomas S. Brettin, Rick Stevens, Jamaludin Mohd-Yusof, Cristina Garcia-Cardona, Brian Van Essen, Matthew Baughman
2018	Misc	`conf`	Chisim: an Agent-based simulation Model of Social Interactions in a Large Urban Area. WSC Charles M. Macal, Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara, John T. Murphy
2018	J	`jnl`	Extreme-Scale Dynamic Exploration of a Distributed Agent-Based Model With the EMEWS Framework. IEEE Trans. Comput. Soc. Syst. Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Charles M. Macal, Gary An
2018	J	`jnl`	High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow. BMC Bioinform. Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Charles M. Macal, Chase Cockrell, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Randy W. Heiland, Gary An, Paul Macklin
2018	Misc	`conf`	Modeling an Information-based Community Health Intervention on the South Side of Chicago. WSC Chaitanya Kaligotla, Jonathan Ozik, Nicholson T. Collier, Charles M. Macal, Stacy T. Lindau, Emily Abramsohn, Elbert S. Huang
2018	—	`conf`	Portable and Reusable Deep Learning Infrastructure with Containers to Accelerate Cancer Studies. ESPM2@SC George F. Zaki, Justin M. Wozniak, Jonathan Ozik, Nicholson T. Collier, Thomas S. Brettin, Rick Stevens
2017	—	`conf`	Endogenous Social Networks from Large-Scale Agent-Based Models. IPDPS Workshops Eric Tatara, Nicholson T. Collier, Jonathan Ozik, Charles M. Macal
2016	Misc	`conf`	From desktop to Large-Scale Model Exploration with Swift/T. WSC Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Carmine Spagnuolo
2015	—	`conf`	Large-Scale Agent-Based Modeling with Repast HPC: A Case Study in Parallelizing an Agent-Based Model. Euro-Par Workshops Nicholson T. Collier, Jonathan Ozik, Charles M. Macal
2015	J	`jnl`	Repast Simphony Statecharts. J. Artif. Soc. Soc. Simul. Jonathan Ozik, Nicholson T. Collier, Todd Combs, Charles M. Macal, Michael J. North
2015	Misc	`conf`	Simulating regional hydrology and water management: an integrated agent-based approach. WSC John T. Murphy, Jonathan Ozik, Nicholson T. Collier, Mark Altaweel, Richard B. Lammers, Alexander A. Prusevich, Andrew D. Kliskey, Lilian N. Alessa
2014	—	`conf`	Adaptive Simulation with Repast Simphony and Swift. Euro-Par Workshops (1) Jonathan Ozik, Michael Wilde, Nicholson T. Collier, Charles M. Macal
2014	Misc	`conf`	Simulating water, individuals, and management using a coupled and distributed approach. WSC Jonathan Ozik, Nicholson T. Collier, John T. Murphy, Mark Altaweel, Richard B. Lammers, Alexander A. Prusevich, Andrew D. Kliskey, Lilian N. Alessa
2013	J	`jnl`	Complex adaptive systems modeling with Repast Simphony. Complex Adapt. Syst. Model. Michael J. North, Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara, Charles M. Macal, Mark J. Bragen, Pam Sydelko
2013	J	`jnl`	Parallel agent-based simulation with Repast for High Performance Computing. Simul. Nicholson T. Collier, Michael J. North
2013	Misc	`conf`	Test-driven agent-based simulation development. WSC Nicholson T. Collier, Jonathan Ozik
2013	Misc	`conf`	The ReLogo agent-based modeling language. WSC Jonathan Ozik, Nicholson T. Collier, John T. Murphy, Michael J. North
2012	Misc	`conf`	Modeling the spread of community-associated MRSA. WSC Charles M. Macal, Michael J. North, Nicholson T. Collier, Vanja M. Dukic, Diane S. Lauderdale, Michael Z. David, Robert S. Daum, Philip Shumm, James A. Evans, Jocelyn R. Wilder, Duane T. Wegener
2006	—	`conf`	A Declarative Model Assembly Infrastructure for Verification and Validation. WCSS Michael J. North, T. R. Howe, Nicholson T. Collier, Jerry R. Vos
2006	—	`conf`	Demeter, Persephone, and the Search for Emergence in Agent-Based Models. AAAI Fall Symposium: Interaction and Emergent Phenomena in Societies of Agents Michael J. North, T. R. Howe, Nicholson T. Collier, Jerry R. Vos
2006	J	`jnl`	Experiences creating three implementations of the repast agent modeling toolkit. ACM Trans. Model. Comput. Simul. Michael J. North, Nicholson T. Collier, Jerry R. Vos