Nicholas Matsumoto

13 papers B 1Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
AI-driven Automation of End-to-end Assessment of Suturing Expertise.
CoRR
Atharva Deo, Nicholas Matsumoto, Sun Kim, Peter Wager, Randy G. Tsai, Aaron Denmark, Cherine Yang, Xi Li, Jay Moran, Miguel E. Hernandez, Andrew J. Hung
2025 J jnl
Drug repurposing for Alzheimer's disease using a graph-of-thoughts based large language model to infer drug-disease relationships in a comprehensive knowledge graph.
BioData Min.
Zhiping Paul Wang, Xi Li, Nicholas Matsumoto, Mythreye Venkatesan, Jui-Hsuan Chang, Jay Moran, Hyunjun Choi, Binglan Li, Yufei Meng, Miguel E. Hernandez, Jason H. Moore
2025 J jnl
ESCARGOT: an AI agent leveraging large language models, dynamic graph of thoughts, and biomedical knowledge graphs for enhanced reasoning.
Bioinform.
Nicholas Matsumoto, Hyunjun Choi, Jay Moran, Miguel E. Hernandez, Mythreye Venkatesan, Xi Li, Jui-Hsuan Chang, Zhiping Paul Wang, Jason H. Moore
2025 J jnl
End to End AI System for Surgical Gesture Sequence Recognition and Clinical Outcome Prediction.
CoRR
Xi Li, Nicholas Matsumoto, Ujjwal Pasupulety, Atharva Deo, Cherine Yang, Jay Moran, Miguel E. Hernandez, Peter Wager, Jasmine Lin, Jeanine Kim, Alvin C. Goh, Christian Wagner, Geoffrey A. Sonn, Andrew J. Hung
2025 J jnl
StarBASE-GP: Biologically-Guided Automated Machine Learning for Genotype-to-Phenotype Association Analysis.
CoRR
Jose Guadalupe Hernandez, Attri Ghosh, Philip J. Freda, Yufei Meng, Nicholas Matsumoto, Jason H. Moore
2024 J jnl
Distinct network patterns emerge from Cartesian and XOR epistasis models: a comparative network science analysis.
BioData Min.
Zhendong Sha, Philip J. Freda, Priyanka Bhandary, Attri Ghosh, Nicholas Matsumoto, Jason H. Moore, Ting Hu
2024 J jnl
Interaction models matter: an efficient, flexible computational framework for model-specific investigation of epistasis.
BioData Min.
Sandra Batista, Vered Madar, Philip J. Freda, Priyanka Bhandary, Attri Ghosh, Nicholas Matsumoto, Apurva S. Chitre, Abraham A. Palmer, Jason H. Moore
2024 J jnl
KRAGEN: a knowledge graph-enhanced RAG framework for biomedical problem solving using large language models.
Bioinform.
Nicholas Matsumoto, Jay Moran, Hyunjun Choi, Miguel E. Hernandez, Mythreye Venkatesan, Zhiping Paul Wang, Jason H. Moore
2024 J jnl
PAGER: A novel genotype encoding strategy for modeling deviations from additivity in complex trait association studies.
BioData Min.
Philip J. Freda, Attri Ghosh, Priyanka Bhandary, Nicholas Matsumoto, Apurva S. Chitre, Jiayan Zhou, Molly A. Hall, Abraham A. Palmer, Tayo Obafemi-Ajayi, Jason H. Moore
2023 J jnl
Aliro: an automated machine learning tool leveraging large language models.
Bioinform.
Hyunjun Choi, Jay Moran, Nicholas Matsumoto, Miguel E. Hernandez, Jason H. Moore
2023 B conf
Faster Convergence with Lexicase Selection in Tree-Based Automated Machine Learning.
EuroGP
Nicholas Matsumoto, Anil Kumar Saini, Pedro Henrique Ribeiro, Hyunjun Choi, Alena Orlenko, Leo-Pekka Lyytikäinen, Jari O. Laurikka, Terho Lehtimäki, Sandra Batista, Jason H. Moore
2023 J jnl
Faster Convergence with Lexicase Selection in Tree-based Automated Machine Learning.
CoRR
Nicholas Matsumoto, Anil Kumar Saini, Pedro Henrique Ribeiro, Hyunjun Choi, Alena Orlenko, Leo-Pekka Lyytikäinen, Jari O. Laurikka, Terho Lehtimäki, Sandra Batista, Jason H. Moore
2023 — conf
TPOT2: A New Graph-Based Implementation of the Tree-Based Pipeline Optimization Tool for Automated Machine Learning.
GPTP
Pedro Henrique Ribeiro, Anil Kumar Saini, Jay Moran, Nicholas Matsumoto, Hyunjun Choi, Miguel E. Hernandez, Jason H. Moore