Niall Gaffney - RankMe

20 papers A 1Journal 8Unranked 11

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	AstroVisBench: A Code Benchmark for Scientific Computing and Visualization in Astronomy. CoRR Sebastian Antony Joseph, Syed Murtaza Husain, Stella S. R. Offner, Stéphanie Juneau, Paul Torrey, Adam S. Bolton, Juan P. Farias, Niall Gaffney, Greg Durrett, Junyi Jessy Li
2024	—	`conf`	Human-powered AI Gym: Lessons Learned as the Test and Evaluation Team for the DARPA SHADE Program: Human-powered AI Gym. PEARC Justin Drake, Niall Gaffney, Nathan Dean Freeman, Erik S. Ferlanti, John M. Fonner
2022	J	`jnl`	Prediction of whole-cell transcriptional response with machine learning. Bioinform. Mohammed Eslami, Amin Espah Borujeni, Hamed Eramian, Mark Weston, George Zheng, Joshua Urrutia, Carolyn Corbet, Diveena Becker, Paul Maschhoff, Katie Clowers, Alexander Cristofaro, Hamid Doost Hosseini, D. Benjamin Gordon, Yuval Dorfan, Jedediah Singer, Matthew Vaughn, Niall Gaffney, John M. Fonner, Joe Stubbs, Christopher A. Voigt, Enoch Yeung
2020	J	`jnl`	Toward Enabling Reproducibility for Data-Intensive Research using the Whole Tale Platform. CoRR Kyle Chard, Niall Gaffney, Mihael Hategan, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor, Thomas Thelen, Matthew J. Turk, Craig Willis
2019	—	`conf`	A data-driven method for quantifying the impact of a genetic circuit on its host. BioCAS Aqib Hasnain, Diveena Becker, Atsede Siba, Narendra Maheshri, Ben Gordon, Chris Voigt, Enoch Yeung, Subhrajit Sinha, Yuval Dorfan, Amin Espah Borujeni, Yongjin Park, Paul Maschhoff, Uma Saxena, Joshua Urrutia, Niall Gaffney
2019	—	`conf`	Application of BagIt-Serialized Research Object Bundles for Packaging and Re-Execution of Computational Analyses. eScience Kyle Chard, Thomas Thelen, Matthew J. Turk, Craig Willis, Niall Gaffney, Matthew B. Jones, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor
2019	J	`jnl`	Computing environments for reproducibility: Capturing the "Whole Tale". Future Gener. Comput. Syst. Adam Brinckman, Kyle Chard, Niall Gaffney, Mihael Hategan, Matthew B. Jones, Kacper Kowalik, Sivakumar Kulasekaran, Bertram Ludäscher, Bryce D. Mecum, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor, Matthew J. Turk, Kandace Turner
2019	—	`conf`	Implementing Computational Reproducibility in the Whole Tale Environment. P-RECS@HPDC Kyle Chard, Niall Gaffney, Matthew B. Jones, Kacper Kowalik, Bertram Ludäscher, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor, Matthew J. Turk, Craig Willis
2019	J	`jnl`	The demise of the filesystem and multi level service architecture. CoRR William O'Mullane, Niall Gaffney, Frossie Economou, Arfon M. Smith, J. Ross Thomson, Tim Jenness
2019	—	`conf`	Toward Enabling Reproducibility for Data-Intensive Research Using the Whole Tale Platform. PARCO Kyle Chard, Niall Gaffney, Mihael Hategan, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor, Thomas Thelen, Matthew J. Turk, Craig Willis
2018	J	`jnl`	Computing Environments for Reproducibility: Capturing the "Whole Tale". CoRR Adam Brinckman, Kyle Chard, Niall Gaffney, Mihael Hategan, Matthew B. Jones, Kacper Kowalik, Sivakumar Kulasekaran, Bertram Ludäscher, Bryce D. Mecum, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor, Matthew J. Turk, Kandace Turner
2018	J	`jnl`	FanStore: Enabling Efficient and Scalable I/O for Distributed Deep Learning. CoRR Zhao Zhang, Lei Huang, Uri Manor, Linjing Fang, Gabriele Merlo, Craig Michoski, John Cazes, Niall Gaffney
2018	—	`conf`	Improving Research Outcomes Leveraging Digital Libraries, Advanced Computing, and Data. JCDL Niall Gaffney
2017	—	`conf`	Stampede 2: The Evolution of an XSEDE Supercomputer. PEARC Dan Stanzione, Bill Barth, Niall Gaffney, Kelly P. Gaither, Chris Hempel, Tommy Minyard, Susan Mehringer, Eric A. Wernert, H. Tufo, Dhabaleswar K. Panda, Patricia J. Teller
2016	J	`jnl`	Capturing the "Whole Tale" of Computational Research: Reproducibility in Computing Environments. CoRR Bertram Ludäscher, Kyle Chard, Niall Gaffney, Matthew B. Jones, Jaroslaw Nabrzyski, Victoria Stodden, Matthew J. Turk
2015	—	`conf`	Feature frequency profiles for automatic sample identification using PySpark. PyHPC@SC Gregory J. Zynda, Niall Gaffney, Mehmet M. Dalkilic, Matthew W. Vaughn
2015	—	`conf`	Wrangler's user environment: A software framework for management of data-intensive computing system. IEEE BigData Christopher Jordan, David Walling, Weijia Xu, Stephen A. Mock, Niall Gaffney, Dan Stanzione
2014	—	`conf`	Building Wrangler: A transformational data intensive resource for the open science community. IEEE BigData Niall Gaffney, Christopher Jordan, Tommy Minyard, Dan Stanzione
2013	—	`conf`	Performance evaluation of R with Intel Xeon Phi coprocessor. IEEE BigData Yaakoub El Khamra, Niall Gaffney, David Walling, Eric A. Wernert, Weijia Xu, Hui Zhang
2003	A	`conf`	Grid-Based Galaxy Morphology Analysis for the National Virtual Observatory. SC Ewa Deelman, Raymond Plante, Carl Kesselman, Gurmeet Singh, Mei-Hui Su, Gretchen Greene, Robert J. Hanisch, Niall Gaffney, Antonio Volpicelli, James Annis, Vijay Sekhri, Tamas Budavari, María A. Nieto-Santisteban, William O'Mullane, David Bohlender, Tom McGlynn, Arnold H. Rots, Olga Pevunova