Nevan J. Krogan

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
Inference of differential kinase interaction networks with KINference.
Bioinform.
Nicolai Meyerhöfer, Nevan J. Krogan, Benjamin J. Polacco, David B. Blumenthal
2016 J jnl
Non-degradative Ubiquitination of Protein Kinases.
PLoS Comput. Biol.
K. Aurelia Ball, Jeffrey R. Johnson, Mary K. Lewinski, John Guatelli, Erik Verschueren, Nevan J. Krogan, Matthew P. Jacobson
2015 J jnl
Prediction of Functionally Important Phospho-Regulatory Events in
PLoS Comput. Biol.
Jeffrey R. Johnson, Silvia D. Santos, Tasha Johnson, Ursula Pieper, Marta Strumillo, Omar Wagih, Andrej Sali, Nevan J. Krogan, Pedro Beltrão
2012 J jnl
Global landscape of HIV-human protein complexes.
Nat.
Stefanie Jäger, Peter Cimermancic, Natali Gulbahce, Jeffrey R. Johnson, Kathryn E. McGovern, Starlynn C. Clarke, Michael Shales, Gaelle Mercenne, Lars Pache, Kathy Li, Hilda Hernandez, Gwendolyn M. Jang, Shoshannah L. Roth, Eyal Akiva, John Marlett, Melanie Stephens, Iván D'Orso, Jason Fernandes, Marie E. Fahey, Cathal Mahon, Anthony J. O'Donoghue, Aleksandar Todorovic, John H. Morris, David A. Maltby, Tom Alber, Gerard Cagney, Frederic D. Bushman, John A. Young, Sumit K. Chanda, Wesley I. Sundquist, Tanja Kortemme, Ryan D. Hernandez, Charles S. Craik, Alma Burlingame, Andrej Sali, Alan D. Frankel, Nevan J. Krogan
2011 J jnl
Distinct configurations of protein complexes and biochemical pathways revealed by epistatic interaction network motifs.
BMC Syst. Biol.
Fergal P. Casey, Nevan J. Krogan, Denis C. Shields, Gerard Cagney
2011 J jnl
GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data.
BMC Bioinform.
Marie E. Fahey, Melanie J. Bennett, Cathal Mahon, Stefanie Jäger, Lars Pache, Dhiraj Kumar, Alex Shapiro, Kanury Rao, Sumit K. Chanda, Charles S. Craik, Alan D. Frankel, Nevan J. Krogan
2011 J jnl
Improved functional overview of protein complexes using inferred epistatic relationships.
BMC Syst. Biol.
Colm J. Ryan, Derek Greene, Aude Guénolé, Haico van Attikum, Nevan J. Krogan, Pádraig Cunningham, Gerard Cagney
2008 J jnl
Ensemble non-negative matrix factorization methods for clustering protein-protein interactions.
Bioinform.
Derek Greene, Gerard Cagney, Nevan J. Krogan, Padraig Cunningham
2008 J jnl
Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data.
PLoS Comput. Biol.
Sourav Bandyopadhyay, Ryan M. Kelley, Nevan J. Krogan, Trey Ideker
2008 J jnl
Optimal stepwise experimental design for pairwise functional interaction studies.
Bioinform.
Fergal P. Casey, Gerard Cagney, Nevan J. Krogan, Denis C. Shields
2006 J jnl
PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs.
BMC Bioinform.
Sylvain Pitre, Frank K. H. A. Dehne, Albert Chan, James Cheetham, Alex Duong, Andrew Emili, Marinella Gebbia, Jack Greenblatt, Matthew Jessulat, Nevan J. Krogan, Xuemei Luo, Ashkan Golshani