Nela Zavaljevski

11 papers Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2016 J jnl
BMC Bioinform.
Vesna Memisevic, Kamal Kumar, Nela Zavaljevski, David DeShazer, Anders Wallqvist, Jaques Reifman
2015 J jnl
PLoS Comput. Biol.
Vesna Memisevic, Nela Zavaljevski, Seesandra V. Rajagopala, Keehwan Kwon, Rembert Pieper, David DeShazer, Jaques Reifman, Anders Wallqvist
2014 J jnl
BMC Bioinform.
Vesna Memievi, Kamal Kumar, Li Cheng, Nela Zavaljevski, David DeShazer, Anders Wallqvist, Jaques Reifman
2011 J jnl
Source Code Biol. Medicine
Ravi Vijaya Satya, Nela Zavaljevski, Jaques Reifman
2010 J jnl
BMC Bioinform.
Ravi Vijaya Satya, Kamal Kumar, Nela Zavaljevski, Jaques Reifman
2010 J jnl
Comput. Sci. Eng.
Anders Wallqvist, Nela Zavaljevski, Ravi Vijaya Satya, Rajkumar Bondugula, Valmik Desai, Xin Hu, Kamal Kumar, Michael S. Lee, In-Chul Yeh, Chenggang Yu, Jaques Reifman
2008 J jnl
BMC Bioinform.
Ravi Vijaya Satya, Nela Zavaljevski, Kamal Kumar, Jaques Reifman
2008 J jnl
BMC Bioinform.
Chenggang Yu, Nela Zavaljevski, Valmik Desai, Seth Johnson, Fred J. Stevens, Jaques Reifman
2007 J jnl
Bioinform.
Waibhav Tembe, Nela Zavaljevski, Elizabeth A. Bode, Catherine Chase, Jeanne Geyer, Leonard P. Wasieloski, Gary Benson, Jaques Reifman
2005 conf
ISMB (Supplement of Bioinformatics)
Chenggang Yu, Nela Zavaljevski, Fred J. Stevens, Kelly Yackovich, Jaques Reifman
2002 J jnl
Bioinform.
Nela Zavaljevski, Fred J. Stevens, Jaques Reifman
tests/unit/test_apk_jadx_wrapper.py
← Index tests/unit/test_apk_jadx_wrapper.py python
"""
Unit tests for JADX wrapper subprocess management and output parsing.

All subprocess calls are mocked — no JADX/Java installation required.
"""
import os
import tempfile
import textwrap

import pytest
from unittest.mock import MagicMock, patch, call

pytestmark = [pytest.mark.unit, pytest.mark.apk, pytest.mark.decompile]


class TestJADXDecompiler:
    """Tests for JADXDecompiler subprocess wrapper."""

    @patch.dict(os.environ, {}, clear=False)
    def test_init_defaults(self):
        os.environ.pop("JADX_PATH", None)
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        assert j.jadx_path == "jadx"
        assert j.timeout == 300

    def test_init_custom_path(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler(jadx_path="/usr/local/bin/jadx", timeout=300)
        assert j.jadx_path == "/usr/local/bin/jadx"
        assert j.timeout == 300

    def test_init_from_env(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        with patch.dict(os.environ, {"JADX_PATH": "/opt/jadx/bin/jadx", "JADX_TIMEOUT": "120"}):
            j = JADXDecompiler()
            assert j.jadx_path == "/opt/jadx/bin/jadx"
            assert j.timeout == 120

    @patch("subprocess.Popen")
    def test_decompile_success(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("output", "")
        mock_proc.returncode = 0
        mock_popen.return_value = mock_proc

        j = JADXDecompiler()
        result = j.decompile("/test.apk", "/output")
        assert result is True

    @patch("subprocess.Popen")
    def test_decompile_nonzero_exit_no_sources(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("", "error msg")
        mock_proc.returncode = 1
        mock_popen.return_value = mock_proc

        j = JADXDecompiler(log=MagicMock())
        result = j.decompile("/test.apk", "/nonexistent_output")
        assert result is False

    @patch("subprocess.Popen")
    def test_decompile_timeout(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        import subprocess
        mock_proc = MagicMock()
        mock_proc.communicate.side_effect = subprocess.TimeoutExpired(cmd="jadx", timeout=10)
        mock_proc.pid = 12345
        mock_popen.return_value = mock_proc

        with patch("os.getpgid", return_value=12345), \
             patch("os.killpg"):
            j = JADXDecompiler(timeout=10, log=MagicMock())
            result = j.decompile("/test.apk", "/output")
            assert result is False

    @patch("subprocess.Popen", side_effect=FileNotFoundError)
    def test_decompile_not_found(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler(log=MagicMock())
        result = j.decompile("/test.apk", "/output")
        assert result is False

    @patch("subprocess.Popen")
    def test_decompile_command_args(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("", "")
        mock_proc.returncode = 0
        mock_popen.return_value = mock_proc

        j = JADXDecompiler(jadx_path="/opt/jadx")
        j.decompile("/test.apk", "/output")

        cmd = mock_popen.call_args[0][0]
        assert cmd[0] == "/opt/jadx"
        assert "--no-res" in cmd
        assert "--no-imports" in cmd
        assert "--threads-count" in cmd
        assert "/test.apk" in cmd

    def test_parse_java_methods_empty_dir(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        result = j.parse_java_methods("/nonexistent")
        assert result == {}

    def test_parse_java_methods_with_files(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        with tempfile.TemporaryDirectory() as tmpdir:
            sources_dir = os.path.join(tmpdir, "sources", "com", "example")
            os.makedirs(sources_dir)

            java_content = textwrap.dedent("""\
                package com.example;

                public class MyClass {
                    public void doStuff(int x) {
                        System.out.println(x);
                    }

                    private String getName() {
                        return "test";
                    }
                }
            """)
            with open(os.path.join(sources_dir, "MyClass.java"), "w") as f:
                f.write(java_content)

            j = JADXDecompiler()
            methods = j.parse_java_methods(tmpdir)
            assert len(methods) >= 1

    def test_extract_methods_from_java(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        source = textwrap.dedent("""\
            public void foo(int x) {
                if (x > 0) {
                    System.out.println(x);
                }
            }
        """)
        j = JADXDecompiler()
        methods = j._extract_methods_from_java(source, "com.example.Test")
        assert len(methods) == 1
        key = list(methods.keys())[0]
        assert "foo" in key

    def test_is_method_declaration_valid(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        result = j._is_method_declaration("    public void foo(int x) {")
        assert result is not None
        assert result[0] == "foo"

    def test_is_method_declaration_control_flow(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        # 'if', 'for', etc. should not be recognized as methods
        assert j._is_method_declaration("        if (x > 0) {") is None
        assert j._is_method_declaration("        for (int i = 0; i < 10; i++) {") is None

    def test_is_method_declaration_static(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        result = j._is_method_declaration("    public static void main(String[] args) {")
        assert result is not None
        assert result[0] == "main"