Neil R. Clark

12 papers Misc 1Journal 9Unranked 2
YearRankTypeTitle / Venue / Authors
2018 Misc conf
Cell-specific prediction and application of drug-induced gene expression .
PSB
Rachel Hodos, Ping Zhang, Hao-Chih Lee, Qiaonan Duan, Zichen Wang, Neil R. Clark, Avi Ma'ayan, Fei Wang, Brian A. Kidd, Jianying Hu, David A. Sontag, Joel Dudley
2016 J jnl
Drug-induced adverse events prediction with the LINCS L1000 data.
Bioinform.
Zichen Wang, Neil R. Clark, Avi Ma'ayan
2016 J jnl
Large Collection of Diverse Gene Set Search Queries Recapitulate Known Protein-Protein Interactions and Gene-Gene Functional Associations.
CoRR
Avi Ma'ayan, Neil R. Clark
2015 J jnl
Dynamics of the discovery process of protein-protein interactions from low content studies.
BMC Syst. Biol.
Zichen Wang, Neil R. Clark, Avi Ma'ayan
2015 — conf
Principle Angle Enrichment Analysis (PAEA): Dimensionally reduced multivariate gene set enrichment analysis tool.
BIBM
Neil R. Clark, Maciej Szymkiewicz, Zichen Wang, Caroline D. Monteiro, Matthew R. Jones, Avi Ma'ayan
2014 J jnl
The characteristic direction: a geometrical approach to identify differentially expressed genes.
BMC Bioinform.
Neil R. Clark, Kevin S. Hu, Axel S. Feldmann, Yan Kou, Edward Y. Chen, Qiaonan Duan, Avi Ma'ayan
2013 — conf
ChEA2: Gene-Set Libraries from ChIP-X Experiments to Decode the Transcription Regulome.
CD-ARES
Yan Kou, Edward Y. Chen, Neil R. Clark, Qiaonan Duan, Christopher M. Tan, Avi Ma'ayan
2013 J jnl
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool.
BMC Bioinform.
Edward Y. Chen, Christopher M. Tan, Yan Kou, Qiaonan Duan, Zichen Wang, Gabriela Vaz Meirelles, Neil R. Clark, Avi Ma'ayan
2013 J jnl
Network2Canvas: network visualization on a canvas with enrichment analysis.
Bioinform.
Christopher M. Tan, Edward Y. Chen, Ruth Dannenfelser, Neil R. Clark, Avi Ma'ayan
2012 J jnl
Genes2FANs: connecting genes through functional association networks.
BMC Bioinform.
Ruth Dannenfelser, Neil R. Clark, Avi Ma'ayan
2012 J jnl
Sets2Networks: network inference from repeated observations of sets.
BMC Syst. Biol.
Neil R. Clark, Ruth Dannenfelser, Christopher M. Tan, Michael E. Komosinski, Avi Ma'ayan
2011 J jnl
Recovering Protein-Protein and Domain-Domain Interactions from Aggregation of IP-MS Proteomics of Coregulator Complexes.
PLoS Comput. Biol.
Amin R. Mazloom, Ruth Dannenfelser, Neil R. Clark, Arsen V. Grigoryan, Kathryn M. Linder, Timothy Cardozo, Julia C. Bond, Aislyn D. W. Boran, Ravi Iyengar, Anna Malovannaya, Rainer B. Lanz, Avi Ma'ayan