Neil F. Abernethy

24 papers A 2C 1Misc 5Journal 12Unranked 4
YearRankTypeTitle / Venue / Authors
2025 J jnl
Rapid development of a registry to accelerate COVID-19 vaccine clinical trials.
npj Digit. Medicine
Neil F. Abernethy, Kylie McCloskey, Meg Trahey, Laurie Rinn, Gail Broder, Michele Andrasik, Rebecca Laborde, Daniel McGhan, Scott Spendolini, Senthil Marimuthu, Adam Kanzmeier, Jayson Hanes, James G. Kublin
2025 J jnl
Reviewing Scientific Papers for Critical Problems With Reasoning LLMs: Baseline Approaches and Automatic Evaluation.
CoRR
Tianmai M. Zhang, Neil F. Abernethy
2025 J jnl
UW-BioNLP at ChemoTimelines 2025: Thinking, Fine-Tuning, and Dictionary-Enhanced LLM Systems for Chemotherapy Timeline Extraction.
CoRR
Tianmai M. Zhang, Zhaoyi Sun, Sihang Zeng, Chenxi Li, Neil F. Abernethy, Barbara D. Lam, Fei Xia, Meliha Yetisgen
2024 J jnl
Detecting Reference Errors in Scientific Literature with Large Language Models.
CoRR
Tianmai M. Zhang, Neil F. Abernethy
2019 J jnl
Large benefits to youth-focused HIV treatment-as-prevention efforts in generalized heterosexual populations: An agent-based simulation model.
PLoS Comput. Biol.
John E. Mittler, James T. Murphy, Sarah E. Stansfield, Kathryn Peebles, Geoffrey S. Gottlieb, Neil F. Abernethy, Molly C. Reid, Steven M. Goodreau, Joshua T. Herbeck
2016 — conf
An Analysis of Differences in Biological Pathway Resources.
ICBO/BioCreative
Lucy Lu Wang, John H. Gennari, Neil F. Abernethy
2016 Misc conf
Discovering representational differences between pathway knowledge bases for pathway resource merging.
AMIA
Lucy Lu Wang, John H. Gennari, Neil F. Abernethy
2015 J jnl
Making pharmacogenomic-based prescribing alerts more effective: A scenario-based pilot study with physicians.
J. Biomed. Informatics
Casey Lynnette Overby, Emily Beth Devine, Neil F. Abernethy, Jeannine S. McCune, Peter Tarczy-Hornoch
2015 Misc conf
The SDIDS System for Integrating Global Health Surveillance Data: An Example Application to Malaria Surveillance in Uganda.
AMIA
Kate Zinszer, Anya Okhmatovskaia, Arash Shaban-Nejad, Lauren N. Carroll, Neil F. Abernethy, David L. Buckeridge
2014 J jnl
Usability evaluation of pharmacogenomics clinical decision support aids and clinical knowledge resources in a computerized provider order entry system: A mixed methods approach.
Int. J. Medical Informatics
Emily Beth Devine, Chia-Ju Lee, Casey Lynnette Overby, Neil F. Abernethy, Jeannine McCune, Joe W. Smith, Peter Tarczy-Hornoch
2014 J jnl
Visualization and analytics tools for infectious disease epidemiology: A systematic review.
J. Biomed. Informatics
Lauren N. Carroll, Alan P. Au, Landon T. Detwiler, Tsung-chieh Fu, Ian S. Painter, Neil F. Abernethy
2013 J jnl
Using random walks to identify cancer-associated modules in expression data.
BioData Min.
Deanna Petrochilos, Ali Shojaie, John H. Gennari, Neil F. Abernethy
2012 C conf
Assessing network characteristics of cancer associated genes in metabolic and signaling networks.
CIBCB
Deanna Petrochilos, Neil F. Abernethy
2012 Misc conf
Assessing the effective communication of pharmacogenomics knowledge embedded in the electronic health record for drug therapy individualization.
AMIA
Casey Lynnette Overby, Emily Beth Devine, Neil F. Abernethy, Jeannine McCune, Peter Tarczy-Hornoch
2012 J jnl
Technical desiderata for the integration of genomic data into Electronic Health Records.
J. Biomed. Informatics
Daniel R. Masys, Gail P. Jarvik, Neil F. Abernethy, Nicholas R. Anderson, George J. Papanicolaou, Dina N. Paltoo, Mark A. Hoffman, Isaac S. Kohane, Howard P. Levy
2012 Misc conf
Timeliness and data element completeness of immunization data in Washington State in 2010: a comparison of data transfer methods.
AMIA
Rebecca A. Hills, Debra Revere, Rita Altamore, Neil F. Abernethy, William B. Lober
2010 — conf
Immunization information and population data sources: the information needs of public health practitioners.
IHI
Rebecca A. Hills, Blaine Reeder, Debra Revere, William B. Lober, Neil F. Abernethy
2010 — conf
Linking information systems for HIV care and research in Kenya.
IHI
Alicia F. Guidry, Judd L. Walson, Neil F. Abernethy
2000 A conf
An Evaluation of Ontology Exchange Languages for Bioinformatics.
ISMB
Robin McEntire, Peter D. Karp, Neil F. Abernethy, David Benton, Gregg Helt, Matt DeJongh, Robert Kent, Anthony Kosky, Suzanna Lewis, Dan Hodnett, Eric P. Neumann, Frank Olken, Dhiraj K. Pathak, Peter Tarczy-Hornoch, Luca Toldo, Thodoros Topaloglou
1999 J jnl
RiboWeb: An Ontology-Based System for Collaborative Molecular Biology.
IEEE Intell. Syst.
Russ B. Altman, Michael Bada, Xiaoqian J. Chai, Michelle Whirl Carrillo, Richard O. Chen, Neil F. Abernethy
1999 J jnl
Sophia: a flexible, Web-based knowledge server.
IEEE Intell. Syst.
Neil F. Abernethy, Julie J. Wu, Micheal Hewett, Russ B. Altman
1998 Misc conf
MHCWeb: converting a WWW database into a knowledge-based collaborative environment.
AMIA
Lawrence S. Hon, Neil F. Abernethy, Vladimir Brusic, Jenny Chai, Russ B. Altman
1998 — conf
Sophia: Providing Basic Knowledge Services with a Common DBMS.
KRDB
Neil F. Abernethy, Russ B. Altman
1997 A conf
Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data.
ISMB
Russ B. Altman, Neil F. Abernethy, Richard O. Chen